The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	0	39520	4802101	integrase,plate,capsid,protease,transposase,tail	Burkholderia_virus(48.48%)	56	5414:5430	38428:38444
WP_094521484.1|0_487_-|tail	phage tail protein	tail	F1BUP1	Erwinia_phage	70.1	7.1e-34
WP_000852584.1|489_1068_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|1060_2164_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2154_2502_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2558_3086_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|3082_4237_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|4224_4437_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|4436_5321_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|5320_7786_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
5414:5430	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|7879_8017_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|7961_8297_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|8394_8676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|8678_9203_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|9199_10627_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|10616_10868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|10867_11332_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|11331_11778_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|11779_12118_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|12127_13081_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|13095_14211_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|14425_14884_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|14886_15708_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|15688_17185_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|17184_18726_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|18776_19322_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|19321_19633_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|19632_19959_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|19955_20606_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|20589_21318_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|21320_21671_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|21914_22511_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_144079282.1|22554_22938_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	58.9	1.7e-27
WP_000567456.1|22947_23112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|23115_24885_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|24895_26062_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|26064_26334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|26361_26892_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|27180_27453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|27462_27765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|27761_28145_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|28152_28353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|28349_29033_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|29029_29260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|29249_29465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|29457_29907_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|29878_30268_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|30449_31394_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|31920_33450_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|33460_34849_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|35023_36058_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|36474_36837_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|36823_37153_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|37187_38009_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|38277_38529_-	acid shock protein	NA	NA	NA	NA	NA
38428:38444	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|38922_39105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|39061_39520_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	483161	605212	4802101	integrase,head,terminase,plate,holin,protease,transposase,tail	Salmonella_phage(51.58%)	147	483941:484000	531003:531715
WP_000938184.1|483161_483842_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
483941:484000	attL	AATAAATATCCTCCGGCATAGCCGGAGGTTTTTCTGATGCGCCTGTAAGGCTCTCTTACC	NA	NA	NA	NA
WP_000502118.1|484049_484508_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_024138909.1|485220_485412_-	DUF2767 family protein	NA	A0A0M4R5C3	Salmonella_phage	97.7	5.8e-16
WP_001530989.1|485520_485955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046595041.1|486310_486904_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	87.4	8.2e-93
WP_010835745.1|486893_487718_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	94.9	9.8e-153
WP_046595042.1|487714_489424_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	65.6	7.6e-91
WP_000729406.1|489420_490047_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
WP_001643834.1|490030_491257_-|plate	baseplate J/gp47 family protein	plate	A0A0U2RJZ0	Escherichia_phage	63.9	3.7e-148
WP_001261467.1|491253_491586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000026342.1|491582_492299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010835743.1|492295_493339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000061271.1|493338_493614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000011138.1|493610_494327_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	36.5	1.3e-28
WP_046595047.1|494326_496381_-	hypothetical protein	NA	A0A2R3UAN6	Myoviridae_environmental_samples	35.8	2.9e-20
WP_046595050.1|496504_497092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001133547.1|497091_497529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001018953.1|497532_498927_-	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	37.0	9.3e-71
WP_010835739.1|498932_499871_-	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	39.5	1.9e-51
WP_046595124.1|499854_500265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046595054.1|500282_500708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001643824.1|500720_501206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001110972.1|501270_502302_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	45.5	1.5e-73
WP_046595057.1|502319_503192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050194917.1|503212_504787_-	NUDIX domain-containing protein	NA	Q6UJ14	Burkholderia_virus	48.6	1.7e-20
WP_050194918.1|504787_505663_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	1.5e-55
WP_050194919.1|505634_507065_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.9	2.0e-92
WP_050194920.1|507064_508336_-	hypothetical protein	NA	A0A0U2JTW9	Escherichia_phage	38.3	5.1e-84
WP_050194921.1|508325_509300_-|terminase	terminase small subunit	terminase	C5IHM0	Burkholderia_virus	37.9	3.3e-30
WP_000877751.1|509387_509945_+	YfbU family protein	NA	NA	NA	NA	NA
WP_050194922.1|509971_510520_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_046597900.1|510516_511143_-	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	81.2	4.2e-95
WP_085429533.1|511145_511487_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	1.3e-45
WP_047590233.1|511773_512100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047590230.1|512190_512769_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	49.7	8.4e-42
WP_050194923.1|512765_513059_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	63.2	3.4e-31
WP_047602461.1|513055_513652_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	73.2	2.5e-81
WP_000474096.1|513720_513912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001129735.1|514095_514434_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
WP_050194924.1|514433_516470_-	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	53.1	8.8e-203
WP_001037052.1|517219_517822_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
WP_050194925.1|517814_518063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050194926.1|518066_518747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_055386682.1|518784_520173_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	46.8	8.3e-104
WP_050194928.1|520169_521150_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	79.6	4.0e-44
WP_001195066.1|521152_521377_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
WP_000429172.1|521399_521846_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	51.1	1.9e-25
WP_000364674.1|521910_522144_-	helix-turn-helix transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	44.4	2.9e-09
WP_024136813.1|522252_522708_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	51.7	1.7e-34
WP_046595087.1|523394_523718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042827223.1|523725_523971_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	4.5e-13
WP_042827221.1|524000_526241_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.8	1.8e-108
WP_046595089.1|526237_526792_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	58.2	4.9e-47
WP_000916251.1|526794_526977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000196401.1|527189_527414_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_046595090.1|527414_528434_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	53.2	2.0e-91
WP_000374046.1|529021_529681_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|529767_530097_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|530093_530375_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|531111_531570_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|532701_533913_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
531003:531715	attR	AATAAATATCCTCCGGCATAGCCGGAGGTTTTTCTGATGCGCCTGTAAGGCTCTCTTACCAGCCGCGCCCTAACAGGCGCATACGATCTGACATTTGCATCAAACTTCGTTACTTACGGCCCGTAAACAGGCTGCCCGGATACGGGATCGATAATTGCTCACCCATTTTATCCTCTTCAAGCTGGTGCTTTATGTAGTCCTGTATCTTCGCCGTATTCTTACCCACCGTATCGACATAGTACCCTCTGCACCAGAACTCCCTGTTCCTGTATTTGAATTTTAGATCCCCAAACTGCTCGTAAAGCATCAGACTACTTTTACCCTTCAGATATCCCATGAAACTCGACACACTCATCTTCGGCGGGATCTCCAGAAGCATGTGAATATGATCTGCACAACATTCCGCTTCCAGAATTCGTACGTTTTTCCATTCACACAATTTTCTTAATATGCTGCCTACTGCCCTACGCTTCTCTCCATAGAACGCTTGTCTTCGGTATTTGGGCGCGAAAACTATGTGATATTTACAGTTCCATCGGGTGTGCGCTAAGCTCTTTTCGTCCCCCATTGGGACCCCCTTTTGATTTCTTGTTGAACTTTTGCAGTTGCCAGACCGCAAGATGTTTTAACAAATCAAAAGGGGTTTTAATAACTGGCTTAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTCCATAGACAA	NA	NA	NA	NA
WP_000561983.1|533970_534288_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|534332_534746_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|534919_535582_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|535676_536135_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|536170_538225_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|538348_538795_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|538813_540967_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|540953_541559_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|541775_542285_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|542639_543692_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|543763_544216_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|544401_546162_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|546230_546749_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|546848_547016_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|547269_547833_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|547829_549470_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|549474_550728_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|550742_552650_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|552662_554771_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|554869_555979_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|555975_556518_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|556683_557694_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|557901_560514_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|561530_562232_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|563153_563672_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|563686_565198_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|565197_565878_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|565874_567074_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|567074_567428_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|567668_568424_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|568482_568911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|568910_569642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|569836_570172_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|570168_571200_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|571202_571505_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|571508_572159_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|572158_574111_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|574288_574741_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|574744_575185_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|575196_576342_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|576345_576909_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|576883_577273_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|577259_577814_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|577810_578218_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|578183_578552_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|578593_579535_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|579546_580044_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|580048_581281_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|581295_582033_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|581917_583387_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|583386_584790_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|584755_585508_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|585597_585825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|585921_586299_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|586341_586881_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|586877_587492_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|587491_587773_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|587759_588149_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|588365_588815_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|588950_589076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|589474_590272_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|590261_590408_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|590404_591016_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|591224_591827_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001804676.1|591866_592106_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	5.9e-42
WP_001217670.1|592161_592401_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|592585_593083_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|593093_593273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|594118_594691_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|594694_595168_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|595167_595692_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|595688_596036_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|596046_596796_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|596798_597782_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|597866_598241_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|598206_598443_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|598572_598977_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|599265_599466_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|599556_599853_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|599858_600644_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|600640_601321_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|601398_602463_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|602459_603341_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|603346_603586_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|603626_603875_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|603919_605212_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 3
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	676150	683462	4802101	integrase,protease	Ralstonia_phage(16.67%)	7	671206:671220	682198:682212
671206:671220	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|676150_676528_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|676689_676887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|677098_679375_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|679405_679726_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|680049_680271_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|680400_682347_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
682198:682212	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|682343_683462_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 4
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	1296109	1382961	4802101	tail,tRNA,plate	Salmonella_phage(40.0%)	67	NA	NA
WP_000118732.1|1296109_1297453_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|1297456_1297993_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|1298059_1298545_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|1298781_1299207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|1299178_1299580_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|1301164_1301707_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|1301770_1302061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|1302146_1304810_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|1305177_1306080_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|1306066_1306891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|1306887_1307382_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|1307397_1309281_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|1309277_1310273_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|1311867_1312599_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|1312662_1313130_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|1313126_1313849_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|1313883_1314639_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|1314710_1316078_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|1316133_1316904_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|1316981_1317782_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|1317913_1319089_-	MFS transporter	NA	NA	NA	NA	NA
WP_055386657.1|1319193_1320108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|1320128_1320932_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|1326963_1329537_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|1329666_1330398_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|1330394_1331375_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|1331506_1332244_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|1332515_1332854_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|1332957_1333005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|1333104_1334265_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|1334225_1335134_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|1335191_1336313_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_050186229.1|1336322_1337393_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.5	9.0e-90
WP_001212373.1|1337832_1338351_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|1338343_1339564_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|1339720_1340068_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|1340108_1340876_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|1340920_1341469_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|1341487_1341736_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|1342079_1343441_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|1343606_1344398_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|1344417_1345704_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|1345824_1346382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|1346463_1347054_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|1347177_1348056_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|1348141_1349803_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|1349951_1350290_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|1350455_1350746_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|1350735_1351212_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|1351361_1351844_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_055386683.1|1352463_1363029_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_000533850.1|1363092_1364502_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|1364498_1366679_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|1366686_1367850_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|1368392_1369166_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|1369134_1369308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|1369569_1369788_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|1369878_1370979_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|1370975_1371461_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|1371457_1374535_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|1374527_1374647_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|1374661_1374964_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|1375018_1375534_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|1375543_1376716_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905027.1|1376858_1377425_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|1378108_1379224_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|1379304_1382961_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 5
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	1700375	1743557	4802101	integrase,bacteriocin,tRNA,protease,transposase	Bacillus_virus(25.0%)	47	1721871:1721884	1749819:1749832
WP_001204111.1|1700375_1700834_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|1701023_1702103_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|1702204_1703368_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|1703389_1704436_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|1704809_1705235_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|1705260_1705839_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|1705839_1706547_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|1706534_1707212_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|1707205_1707862_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|1707966_1708425_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|1708613_1710605_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|1710880_1711639_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|1711739_1712660_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|1712887_1714864_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|1714872_1715004_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|1715137_1715302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|1715298_1715598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|1715653_1716808_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|1717300_1718695_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|1718773_1719271_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|1719366_1720074_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|1720150_1720882_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|1720901_1721849_+	glutathione synthase	NA	NA	NA	NA	NA
1721871:1721884	attL	GCGCTTACCGGGCC	NA	NA	NA	NA
WP_001053167.1|1722064_1722628_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|1722627_1723044_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|1723090_1723777_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|1723906_1724887_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|1724904_1725609_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|1725627_1726194_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|1726190_1726481_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|1726488_1727082_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|1727074_1728211_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|1728301_1729309_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|1729441_1730488_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|1730806_1731265_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|1731387_1732107_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|1732156_1732483_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|1732482_1733202_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|1733356_1734409_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|1734436_1734712_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_055386659.1|1734824_1735910_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.8	2.0e-12
WP_001049802.1|1736126_1737383_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|1739993_1740701_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|1741042_1741327_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_014341481.1|1741511_1741856_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_001141622.1|1742976_1743294_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|1743290_1743557_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
1749819:1749832	attR	GGCCCGGTAAGCGC	NA	NA	NA	NA
>prophage 6
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	2683573	2775177	4802101	lysis,head,plate,terminase,integrase,capsid,tRNA,portal,transposase,tail	Salmonella_phage(66.0%)	86	2673073:2673087	2775977:2775991
2673073:2673087	attL	GCGCGCCGCCACGGC	NA	NA	NA	NA
WP_000186987.1|2683573_2684674_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000591414.1|2685047_2686892_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000201804.1|2686836_2687688_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000149790.1|2693601_2694630_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_000655746.1|2694626_2695589_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA	NA
WP_000023068.1|2695623_2696574_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	7.9e-29
WP_001775645.1|2696782_2696956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031748.1|2697532_2698717_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
WP_001275691.1|2698946_2699330_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001287521.1|2699331_2699877_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_001085926.1|2700034_2700463_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_001096676.1|2700466_2701171_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_001207203.1|2701586_2702084_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_000028882.1|2702150_2702516_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_000263105.1|2702833_2706862_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
WP_000653965.1|2706938_2711162_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.1	5.0e-67
WP_001576436.1|2711203_2711527_+	membrane protein	NA	NA	NA	NA	NA
WP_031624270.1|2711532_2711877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000359982.1|2712330_2712546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000643282.1|2712626_2713760_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA	NA
WP_000944065.1|2713756_2714527_-	thiazole synthase	NA	NA	NA	NA	NA
WP_001166848.1|2714528_2714729_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_000999774.1|2714709_2715468_-	HesA/MoeB/ThiF family protein	NA	A0A1V0SAV8	Catovirus	28.5	7.0e-12
WP_000284626.1|2715460_2716096_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_000108425.1|2716095_2717991_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_000934311.1|2718354_2718843_-	sigma D regulator	NA	NA	NA	NA	NA
WP_000373954.1|2718935_2719709_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_000137619.1|2719749_2720814_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000362359.1|2720823_2721495_+	deoxyribonuclease V	NA	A0A1V0SJW5	Klosneuvirus	28.7	2.1e-20
WP_000940092.1|2721536_2722127_+	YjaG family protein	NA	NA	NA	NA	NA
WP_001044509.1|2722313_2722586_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	5.5e-20
WP_001083923.1|2722597_2723290_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
WP_000828129.1|2723331_2723787_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA	NA
WP_001772857.1|2724040_2725438_+	two-component system sensor histidine kinase ZraS	NA	NA	NA	NA	NA
WP_000617932.1|2725443_2726769_+	sigma-54-dependent response regulator transcription factor ZraR	NA	NA	NA	NA	NA
WP_000866776.1|2726765_2728055_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_001187501.1|2728070_2729660_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.4	8.4e-68
WP_001541181.1|2735721_2736570_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000840996.1|2736676_2737015_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_000502114.1|2737122_2737581_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000972391.1|2739162_2739381_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001011760.1|2739471_2740572_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|2740568_2741054_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|2741050_2744128_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|2744120_2744240_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|2744254_2744557_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|2744611_2745127_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|2745136_2746309_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|2746451_2747018_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001174915.1|2748113_2748554_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_048667453.1|2748556_2749963_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	75.3	5.2e-154
WP_001086816.1|2749959_2750565_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|2750557_2751466_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|2751452_2751812_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|2751808_2752387_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|2752455_2752902_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_055386680.1|2752894_2753326_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.7	7.6e-72
WP_001080928.1|2753421_2753850_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|2753846_2754224_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001069905.1|2754225_2754738_-	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000171568.1|2754718_2754934_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|2754937_2755141_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|2755140_2755605_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|2755700_2756351_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|2756354_2757413_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216244.1|2757429_2758263_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|2758405_2760172_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|2760171_2761209_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|2761243_2761984_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|2761980_2762895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|2763508_2764387_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|2764495_2764795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|2764862_2765051_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|2765204_2767619_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|2767615_2768473_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|2768469_2768697_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|2768696_2768930_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|2768997_2769339_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|2769456_2769753_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|2769760_2770270_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|2770302_2770524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|2770649_2771219_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|2771234_2771426_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|2771614_2772667_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|2773292_2773391_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|2773530_2775177_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
2775977:2775991	attR	GCGCGCCGCCACGGC	NA	NA	NA	NA
>prophage 7
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	3042690	3136363	4802101	lysis,integrase,head,plate,terminase,capsid,portal,tail	Salmonella_phage(81.63%)	105	3043863:3043879	3141593:3141609
WP_050186166.1|3042690_3043842_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.4	3.1e-48
3043863:3043879	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|3043938_3044406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|3044617_3045493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|3045680_3046043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|3045999_3046914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|3046932_3047673_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|3047651_3048338_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|3048373_3048874_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|3048883_3049453_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|3049472_3051563_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|3051559_3052318_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|3052554_3052809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|3052808_3053048_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|3053077_3053440_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|3053449_3053824_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|3053820_3054474_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|3054473_3055373_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|3055362_3056841_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|3056827_3057277_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|3060267_3060654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|3060808_3061201_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|3061197_3062166_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|3062180_3063611_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|3063943_3065449_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000993574.1|3065484_3065874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|3066097_3066340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|3066744_3067992_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|3067976_3068618_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|3068828_3069371_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|3070636_3071557_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|3072280_3072583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|3072678_3073059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|3073429_3073639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|3073656_3074109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|3074105_3074402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|3074479_3074938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|3075026_3076976_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|3077047_3077956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|3078029_3078929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|3079003_3079330_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|3079429_3079699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|3079830_3081105_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|3081324_3081702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|3081788_3082007_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|3082074_3083175_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|3083171_3083657_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|3083656_3086203_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|3086429_3086549_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|3086563_3086866_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|3086920_3087436_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|3087445_3088618_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|3088720_3088939_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|3089152_3089875_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|3090072_3090480_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|3090486_3092106_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|3092102_3092708_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|3092700_3093609_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|3093595_3093955_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|3093951_3094530_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|3094598_3095045_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039961.1|3095037_3095469_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_024131238.1|3095564_3095993_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|3095989_3096367_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|3096371_3096881_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|3096861_3097077_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|3097080_3097284_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|3097283_3097748_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|3097841_3098492_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|3098495_3099560_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|3099576_3100410_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|3100552_3102319_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|3102318_3103362_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|3103410_3104106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|3104125_3105190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|3105186_3106251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|3106260_3106479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|3106574_3106808_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|3106819_3107008_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|3107175_3109584_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|3109574_3110435_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|3110431_3111016_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|3111012_3111240_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|3111239_3111473_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|3111540_3111882_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|3111845_3112046_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|3112053_3112563_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|3112595_3112838_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|3112954_3113587_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|3113590_3114616_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|3115722_3115980_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|3115990_3116881_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|3116880_3117627_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|3117928_3119899_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|3119918_3121223_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|3121245_3121941_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|3121966_3122761_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|3122770_3123838_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|3123882_3125619_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|3125618_3128114_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|3128137_3129184_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|3129186_3130464_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|3130708_3131248_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|3132101_3133613_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|3133596_3135186_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|3135349_3136363_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3141593:3141609	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 8
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	3288546	3301207	4802101	integrase	Enterobacteria_phage(55.56%)	13	3279081:3279094	3292212:3292225
3279081:3279094	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|3288546_3290037_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|3290507_3291773_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|3291835_3292912_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
3292212:3292225	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_000700163.1|3292908_3293967_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000493739.1|3293956_3295120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|3295395_3295962_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|3295977_3296217_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_001779443.1|3296220_3296964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000556588.1|3297503_3297770_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	5.8e-30
WP_015701354.1|3297766_3298318_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_001216603.1|3298314_3298542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000795388.1|3298538_3298859_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783716.1|3298873_3301207_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	86.5	0.0e+00
>prophage 9
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	3954658	3960689	4802101		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|3954658_3954805_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|3954820_3954964_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|3955953_3957876_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|3957892_3958147_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|3958115_3958505_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|3959747_3960689_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 10
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	4195198	4204369	4802101	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|4195198_4196146_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|4196129_4196861_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|4196841_4196949_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|4197008_4197740_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272853.1|4197962_4199648_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_050186121.1|4199644_4200364_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|4200410_4200878_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|4200934_4201465_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|4201636_4202095_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|4202335_4204369_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 11
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	4280261	4290768	4802101		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|4280261_4281665_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|4281842_4282736_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|4283112_4284198_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|4284197_4285097_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|4285144_4286023_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|4286023_4286575_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|4286580_4287555_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|4287570_4288344_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|4288348_4289428_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|4289454_4290768_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 12
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	4374510	4381744	4802101		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|4374510_4374930_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|4374932_4376201_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|4376646_4376859_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|4376869_4377058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|4377318_4378503_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|4379153_4379465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|4379544_4380240_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|4380313_4381744_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 13
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	4802101	4585639	4590051	4802101		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|4585639_4586053_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|4586069_4586798_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|4586989_4587532_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|4587679_4588057_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|4588129_4588939_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|4589435_4589600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|4589811_4590051_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 1
NZ_LT904892	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 plasmid 2	192619	81295	97634	192619	transposase,integrase	Escherichia_phage(40.0%)	12	81156:81215	93488:93626
81156:81215	attL	CTAACTTTGTTTTAGGGCGACTGCCCTGCTGCGTAACATCGTTGCTGCTCCATAACATCA	NA	NA	NA	NA
WP_000845054.1|81295_82309_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	6.1e-72
WP_000454193.1|82511_82862_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000427614.1|83701_84706_+|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_000412211.1|86032_86692_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
WP_000656305.1|86892_87270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000427623.1|87580_88585_-|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
WP_001138064.1|88663_91630_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
WP_001067855.1|91852_92557_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001206356.1|93552_94344_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
93488:93626	attR	TGATGTTATGGAGCAGCAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAGACATCATGAGGGAAGCGGTGACCATCGAAATTTCGAACCAACTATCAGAGGTGCTAAGCGTCATTGAGCGCCATCTGGA	NA	NA	NA	NA
WP_000679427.1|94507_94855_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|94848_95688_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000050481.1|96092_97634_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT904892	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 plasmid 2	192619	100813	136497	192619	integrase,transposase	Escherichia_phage(78.95%)	38	100748:100807	114130:114952
100748:100807	attL	CACGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAG	NA	NA	NA	NA
WP_001067855.1|100813_101518_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000015696.1|101875_102154_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_071533317.1|102179_102365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002310911.1|102361_102700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001297013.1|102603_103794_-	tetracycline efflux MFS transporter Tet(C)	NA	NA	NA	NA	NA
WP_001038045.1|103886_104546_+	tetracycline resistance transcriptional repressor TetR(C)	NA	NA	NA	NA	NA
WP_001067855.1|105378_106083_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002210516.1|106794_107415_-	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
WP_002210515.1|107407_108673_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	100.0	2.7e-234
WP_002210514.1|108684_109587_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	100.0	5.3e-160
WP_002210513.1|109847_110609_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_001620095.1|110629_111490_-	class A broad-spectrum beta-lactamase SHV-1	NA	A0A077SL40	Escherichia_phage	99.7	4.4e-156
WP_001620096.1|111787_112048_+	hypothetical protein	NA	A0A077SK33	Escherichia_phage	100.0	1.9e-41
WP_001620097.1|112134_113223_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
WP_001067855.1|114195_114900_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|115510_116215_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
114130:114952	attR	CACGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCC	NA	NA	NA	NA
WP_055386686.1|116226_117327_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.1	2.2e-27
WP_001039466.1|117421_118606_-	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA	NA
WP_000113282.1|118701_119358_+	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA	NA
WP_001067855.1|119369_120074_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000057569.1|121016_121358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004248792.1|121372_122164_-	SprT-like domain-containing protein	NA	NA	NA	NA	NA
WP_000480968.1|122344_123181_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001082319.1|123180_123984_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000904895.1|124049_124664_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	48.1	4.3e-36
WP_001067855.1|124838_125543_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000018326.1|125661_126477_+	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	98.5	4.3e-161
WP_001067855.1|126659_127364_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002210551.1|128411_128540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792636.1|128713_129247_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.9	5.8e-21
WP_000128596.1|129246_130242_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_000101710.1|130283_131444_-	type IV secretion system protein VirB10	NA	NA	NA	NA	NA
WP_000735066.1|131443_132328_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_001067855.1|132498_133203_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001044210.1|133208_133349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001366550.1|133834_134572_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000743213.1|134568_134793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001120888.1|135003_136497_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
