The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP006947	Vibrio cholerae O1 str. KW3 chromosome I, complete sequence	3041360	655821	662438	3041360		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|655821_656955_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|656966_658217_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|658316_658766_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|658791_659895_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|659899_660553_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|660593_661703_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|661967_662438_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP006947	Vibrio cholerae O1 str. KW3 chromosome I, complete sequence	3041360	1508236	1521266	3041360	coat	Vibrio_phage(50.0%)	19	NA	NA
WP_001921130.1|1508236_1509085_+	DNA replication protein	NA	A7BJY2	Enterobacteria_phage	32.8	2.8e-33
WP_080033329.1|1509056_1509800_+	DNA replication protein	NA	NA	NA	NA	NA
WP_000512956.1|1509819_1510089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052673.1|1510218_1510911_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1510988_1511156_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1511148_1511733_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1512222_1512561_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1512686_1513766_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911551.1|1513767_1514118_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000053920.1|1514211_1514436_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000693566.1|1514947_1515286_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1515411_1516491_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000842207.1|1516492_1516849_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|1516984_1517233_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268534.1|1517339_1518527_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000979342.1|1518523_1518817_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1518813_1520013_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1520118_1520895_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000593523.1|1520891_1521266_+	cholera enterotoxin binding subunit CtxB	NA	B9V4E7	Vibrio_virus	100.0	1.0e-64
>prophage 3
NZ_CP006947	Vibrio cholerae O1 str. KW3 chromosome I, complete sequence	3041360	2277119	2284312	3041360		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2277119_2277548_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2277751_2279041_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2279260_2279455_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2279503_2279842_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2279855_2281706_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2281729_2282245_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2282293_2282617_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2282677_2283061_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2283097_2284312_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_CP006947	Vibrio cholerae O1 str. KW3 chromosome I, complete sequence	3041360	2411473	2472196	3041360	transposase,protease	uncultured_virus(42.86%)	46	NA	NA
WP_001920874.1|2411473_2412973_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_000546748.1|2412962_2413718_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.9	5.5e-33
WP_001918292.1|2413848_2415414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000805082.1|2415504_2419197_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_000735886.1|2419199_2420228_-	TraU family protein	NA	NA	NA	NA	NA
WP_001189235.1|2420211_2421336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001166558.1|2421346_2421859_-	S26 family signal peptidase	NA	NA	NA	NA	NA
WP_001044650.1|2421842_2422190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000648042.1|2422182_2424582_-	type IV secretion system protein TraC	NA	NA	NA	NA	NA
WP_001228926.1|2424581_2425274_-	DsbC family protein	NA	NA	NA	NA	NA
WP_000356587.1|2425405_2426344_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_000095578.1|2426336_2427128_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_000180223.1|2427348_2427735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001944091.1|2427731_2428304_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA	NA
WP_000647305.1|2428378_2429668_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_001911237.1|2429670_2430567_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA	NA
WP_000667170.1|2430550_2431177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000433891.1|2431173_2431455_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
WP_001167482.1|2431743_2432331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000033757.1|2432357_2432993_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
WP_000546514.1|2432979_2433540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000661888.1|2433549_2435370_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_000475916.1|2435418_2437569_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001125250.1|2437690_2438506_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_000158025.1|2438540_2439311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000279702.1|2439337_2441389_-|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_000567536.1|2441427_2443731_-	PglZ domain-containing protein	NA	NA	NA	NA	NA
WP_000779609.1|2443743_2447484_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_000152592.1|2447488_2451178_-	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_001115853.1|2451190_2451739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000653856.1|2451722_2452523_-	DUF1819 family protein	NA	NA	NA	NA	NA
WP_000180270.1|2452540_2453461_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_000284114.1|2453778_2454078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196209.1|2454165_2455071_-	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.4	3.1e-06
WP_000182836.1|2455454_2455712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000116661.1|2455710_2456160_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	4.1e-36
WP_001122813.1|2457150_2458362_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_001122813.1|2458462_2459674_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_001043260.1|2461489_2462305_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_001082316.1|2462365_2463169_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
WP_000480968.1|2463168_2464005_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001255015.1|2464627_2464933_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000214119.1|2464960_2466175_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
WP_001447541.1|2466391_2467276_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001120888.1|2467306_2468800_-|transposase	IS91-like element ISVsa3 family transposase	transposase	NA	NA	NA	NA
WP_000985631.1|2469217_2472196_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP006947	Vibrio cholerae O1 str. KW3 chromosome I, complete sequence	3041360	2615084	2622308	3041360		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2615084_2615972_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2616239_2618828_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2618920_2619928_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2620001_2620937_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2620936_2621563_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2621555_2622308_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
