assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001314305.1_ASM131430v1	NZ_CP012900	Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2 chromosome, complete genome	1	63616-63916	1	CRISPRCasFinder	no		WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	Orphan	GATGCCGCCGTTGACGGTTTCCACG	25	0	0	NA	NA	NA	5	5	Orphan	WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	NA,NA	NA|126aa|up_9|NZ_CP012900.1_43589_43967_+	pfam01124, MAPEG, MAPEG family	NA|972aa|up_8|NZ_CP012900.1_44285_47201_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|248aa|up_7|NZ_CP012900.1_47357_48101_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|259aa|up_6|NZ_CP012900.1_48200_48977_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|132aa|up_5|NZ_CP012900.1_49057_49453_+	PRK04233, PRK04233, hypothetical protein; Provisional	NA|434aa|up_4|NZ_CP012900.1_49508_50810_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|325aa|up_3|NZ_CP012900.1_50809_51784_+	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|720aa|up_2|NZ_CP012900.1_51857_54017_+	pfam13406, SLT_2, Transglycosylase SLT domain	NA|393aa|up_1|NZ_CP012900.1_54059_55238_-	pfam03594, BenE, Benzoate membrane transport protein	NA|572aa|up_0|NZ_CP012900.1_61603_63319_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|442aa|down_0|NZ_CP012900.1_64081_65407_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|468aa|down_1|NZ_CP012900.1_65521_66925_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|108aa|down_2|NZ_CP012900.1_67075_67399_-	COG4517, COG4517, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|down_3|NZ_CP012900.1_67436_68129_-	pfam01694, Rhomboid, Rhomboid family	NA|460aa|down_4|NZ_CP012900.1_68344_69724_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|202aa|down_5|NZ_CP012900.1_69848_70454_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|1069aa|down_6|NZ_CP012900.1_70526_73733_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|158aa|down_7|NZ_CP012900.1_74036_74510_+	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|311aa|down_8|NZ_CP012900.1_74527_75460_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|537aa|down_9|NZ_CP012900.1_75524_77135_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I
GCF_001314305.1_ASM131430v1	NZ_CP012900	Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2 chromosome, complete genome	2	131627-131706	2	CRISPRCasFinder	no		WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	Orphan	AAGGCCGATTTTTCGGATGTGAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	NA|127aa|up_8|NZ_CP012900.1_117075_117456_+,NA|175aa|up_6|NZ_CP012900.1_118918_119443_+,NA	NA|235aa|up_9|NZ_CP012900.1_116244_116949_+	cd14817, D-Ala-D-Ala_dipeptidase_VanX, D-Ala-D-Ala dipeptidase VanX	NA|127aa|up_8|NZ_CP012900.1_117075_117456_+	NA	NA|250aa|up_7|NZ_CP012900.1_118103_118853_+	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|175aa|up_6|NZ_CP012900.1_118918_119443_+	NA	NA|455aa|up_5|NZ_CP012900.1_119569_120934_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|1040aa|up_4|NZ_CP012900.1_121182_124302_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1079aa|up_3|NZ_CP012900.1_124298_127535_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|421aa|up_2|NZ_CP012900.1_127699_128962_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|439aa|up_1|NZ_CP012900.1_129171_130488_+	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|271aa|up_0|NZ_CP012900.1_130694_131507_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|163aa|down_0|NZ_CP012900.1_131954_132443_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|742aa|down_1|NZ_CP012900.1_132770_134996_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|573aa|down_2|NZ_CP012900.1_135147_136866_+	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK)	NA|281aa|down_3|NZ_CP012900.1_136952_137795_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|573aa|down_4|NZ_CP012900.1_137870_139589_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|110aa|down_5|NZ_CP012900.1_139810_140140_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|562aa|down_6|NZ_CP012900.1_140337_142023_+	PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional	NA|229aa|down_7|NZ_CP012900.1_142123_142810_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|326aa|down_8|NZ_CP012900.1_142806_143784_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|281aa|down_9|NZ_CP012900.1_143791_144634_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)
GCF_001314305.1_ASM131430v1	NZ_CP012900	Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2 chromosome, complete genome	3	2137565-2137722	1	PILER-CR	no		WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	Orphan	CACCGATGCCAACGGCAAGC	20	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	NA|113aa|up_5|NZ_CP012900.1_2133702_2134041_-,NA	NA|928aa|up_9|NZ_CP012900.1_2126691_2129475_-	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|354aa|up_8|NZ_CP012900.1_2129536_2130598_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|582aa|up_7|NZ_CP012900.1_2130600_2132346_+	cd01948, EAL, EAL domain	NA|384aa|up_6|NZ_CP012900.1_2132401_2133553_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|113aa|up_5|NZ_CP012900.1_2133702_2134041_-	NA	NA|101aa|up_4|NZ_CP012900.1_2134037_2134340_-	pfam04316, FlgM, Anti-sigma-28 factor, FlgM	NA|215aa|up_3|NZ_CP012900.1_2134405_2135050_-	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|315aa|up_2|NZ_CP012900.1_2135214_2136159_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|133aa|up_1|NZ_CP012900.1_2136332_2136731_+	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|136aa|up_0|NZ_CP012900.1_2136741_2137149_+	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|426aa|down_0|NZ_CP012900.1_2137881_2139159_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|250aa|down_1|NZ_CP012900.1_2139262_2140012_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|down_2|NZ_CP012900.1_2140112_2140898_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|231aa|down_3|NZ_CP012900.1_2140921_2141614_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|377aa|down_4|NZ_CP012900.1_2141659_2142790_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|396aa|down_5|NZ_CP012900.1_2142792_2143980_+	PRK12711, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|628aa|down_6|NZ_CP012900.1_2143991_2145875_+	PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional	NA|401aa|down_7|NZ_CP012900.1_2145874_2147077_+	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|413aa|down_8|NZ_CP012900.1_2147139_2148378_+	PRK08869, PRK08869, polar flagellin E	NA|416aa|down_9|NZ_CP012900.1_2148691_2149939_+	PRK08869, PRK08869, polar flagellin E
GCF_001314305.1_ASM131430v1	NZ_CP012900	Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2 chromosome, complete genome	4	2550252-2550614	3	CRISPRCasFinder	no	csa3	WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	Type I-A	ATCGGCAGCATCGGCTCGGGCGAC	24	0	0	NA	NA	NA	6	6	Orphan	WYL,DEDDh,DinG,Cas9_archaeal,cas3,csa3	NA|81aa|up_3|NZ_CP012900.1_2547295_2547538_+,NA|338aa|up_0|NZ_CP012900.1_2548768_2549782_+,NA|145aa|down_1|NZ_CP012900.1_2551344_2551779_+,NA|96aa|down_5|NZ_CP012900.1_2557282_2557570_+	NA|390aa|up_9|NZ_CP012900.1_2541973_2543143_+	pfam12832, MFS_1_like, MFS_1 like family	NA|219aa|up_8|NZ_CP012900.1_2543252_2543909_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|81aa|up_7|NZ_CP012900.1_2543926_2544169_-	PRK00846, PRK00846, hypothetical protein; Provisional	NA|450aa|up_6|NZ_CP012900.1_2544161_2545511_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|320aa|up_5|NZ_CP012900.1_2545533_2546493_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|190aa|up_4|NZ_CP012900.1_2546593_2547163_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|81aa|up_3|NZ_CP012900.1_2547295_2547538_+	NA	NA|121aa|up_2|NZ_CP012900.1_2547540_2547903_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|291aa|up_1|NZ_CP012900.1_2547899_2548772_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|338aa|up_0|NZ_CP012900.1_2548768_2549782_+	NA	NA|196aa|down_0|NZ_CP012900.1_2550696_2551284_+	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|145aa|down_1|NZ_CP012900.1_2551344_2551779_+	NA	NA|466aa|down_2|NZ_CP012900.1_2551863_2553261_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|461aa|down_3|NZ_CP012900.1_2553414_2554797_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|665aa|down_4|NZ_CP012900.1_2555117_2557112_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|96aa|down_5|NZ_CP012900.1_2557282_2557570_+	NA	NA|751aa|down_6|NZ_CP012900.1_2557711_2559964_+	cd01948, EAL, EAL domain	NA|487aa|down_7|NZ_CP012900.1_2560006_2561467_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_8|NZ_CP012900.1_2561463_2562369_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|944aa|down_9|NZ_CP012900.1_2562547_2565379_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed
