assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001314245.2_ASM131424v2	NZ_CP012890	Lactobacillus gallinarum strain HFD4 chromosome, complete genome	1	1911878-1914704	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas14k	csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCACTCACAAGGAGTGCGAC,TATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC	32,33,32	6	6	1914307-1914340|1914439-1914472|1914571-1914606|1912641-1912674|1914307-1914339|1914571-1914605	NZ_CP012890.1_1893584-1893551|NZ_CP012890.1_1893625-1893592|NZ_CP012890.1_1892397-1892362|NZ_CP012890.1_1867224-1867191|NZ_CP012890.1_1893584-1893552|NZ_CP012890.1_1892397-1892363	I-C:I-C:I-C	42,41,41	42	TypeV,TypeI-U?,TypeI-U,TypeI-C	csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|76aa|up_5|NZ_CP012890.1_1903974_1904202_+,NA|66aa|up_4|NZ_CP012890.1_1904436_1904634_+,NA|74aa|up_3|NZ_CP012890.1_1904647_1904869_+,NA	NA|250aa|up_9|NZ_CP012890.1_1901943_1902693_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_8|NZ_CP012890.1_1902708_1902897_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|114aa|up_7|NZ_CP012890.1_1903162_1903504_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|134aa|up_6|NZ_CP012890.1_1903496_1903898_+	cd07324, M48C_Oma1-like, Oma1 peptidase-like, integral membrane metallopeptidase	NA|76aa|up_5|NZ_CP012890.1_1903974_1904202_+	NA	NA|66aa|up_4|NZ_CP012890.1_1904436_1904634_+	NA	NA|74aa|up_3|NZ_CP012890.1_1904647_1904869_+	NA	NA|377aa|up_2|NZ_CP012890.1_1905067_1906198_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|293aa|up_1|NZ_CP012890.1_1906289_1907168_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|469aa|up_0|NZ_CP012890.1_1909752_1911159_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	cas2|97aa|down_0|NZ_CP012890.1_1914865_1915156_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP012890.1_1915165_1916197_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NZ_CP012890.1_1916193_1916850_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|286aa|down_3|NZ_CP012890.1_1916852_1917710_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|658aa|down_4|NZ_CP012890.1_1917712_1919686_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|248aa|down_5|NZ_CP012890.1_1919685_1920429_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	NA|350aa|down_6|NZ_CP012890.1_1920841_1921891_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|289aa|down_7|NZ_CP012890.1_1926098_1926965_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|410aa|down_8|NZ_CP012890.1_1926979_1928209_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|497aa|down_9|NZ_CP012890.1_1928323_1929814_+	PRK09225, PRK09225, threonine synthase; Validated
GCF_001314245.2_ASM131424v2	NZ_CP012890	Lactobacillus gallinarum strain HFD4 chromosome, complete genome	2	2122687-2122847	2	CRISPRCasFinder	no	cas14j	csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	TCCTTTTCTTGGTTAAATTGCGTTATACTTTTCATTGCGTAGGATCTCCTTT	52	0	0	NA	NA	NA	1	1	TypeV	csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|78aa|up_9|NZ_CP012890.1_2113510_2113744_+,NA|178aa|up_6|NZ_CP012890.1_2117891_2118425_-,NA|59aa|up_3|NZ_CP012890.1_2119093_2119270_-,NA|99aa|up_1|NZ_CP012890.1_2120731_2121028_-,NA|98aa|up_0|NZ_CP012890.1_2121141_2121435_-,NA|78aa|down_4|NZ_CP012890.1_2127434_2127668_+,NA|71aa|down_7|NZ_CP012890.1_2130341_2130554_+	NA|78aa|up_9|NZ_CP012890.1_2113510_2113744_+	NA	cas14j|410aa|up_8|NZ_CP012890.1_2114051_2115281_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|582aa|up_7|NZ_CP012890.1_2115821_2117567_-	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains	NA|178aa|up_6|NZ_CP012890.1_2117891_2118425_-	NA	NA|116aa|up_5|NZ_CP012890.1_2118464_2118812_-	pfam03217, SLAP, SLAP domain	NA|90aa|up_4|NZ_CP012890.1_2118830_2119100_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|59aa|up_3|NZ_CP012890.1_2119093_2119270_-	NA	NA|390aa|up_2|NZ_CP012890.1_2119348_2120518_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|99aa|up_1|NZ_CP012890.1_2120731_2121028_-	NA	NA|98aa|up_0|NZ_CP012890.1_2121141_2121435_-	NA	NA|221aa|down_0|NZ_CP012890.1_2123017_2123680_+	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|294aa|down_1|NZ_CP012890.1_2123695_2124577_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|109aa|down_2|NZ_CP012890.1_2124581_2124908_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|207aa|down_3|NZ_CP012890.1_2126700_2127321_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|down_4|NZ_CP012890.1_2127434_2127668_+	NA	NA|285aa|down_5|NZ_CP012890.1_2127711_2128566_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|227aa|down_6|NZ_CP012890.1_2128565_2129246_-	PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional	NA|71aa|down_7|NZ_CP012890.1_2130341_2130554_+	NA	NA|704aa|down_8|NZ_CP012890.1_2131108_2133220_-	pfam03217, SLAP, SLAP domain	NA|76aa|down_9|NZ_CP012890.1_2133774_2134002_-	TIGR04499, abortive_AbiA, abortive infection protein, AbiA family
GCF_001314245.2_ASM131424v2	NZ_CP012890	Lactobacillus gallinarum strain HFD4 chromosome, complete genome	3	2157227-2157315	3	CRISPRCasFinder	no		csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TAGTTGTGGTTATCACCGTCGTTGCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas14j,RT,cas14k,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5	NA|350aa|up_6|NZ_CP012890.1_2149468_2150518_+,NA|82aa|up_2|NZ_CP012890.1_2154488_2154734_-,NA|349aa|up_0|NZ_CP012890.1_2155709_2156756_-,NA|169aa|down_0|NZ_CP012890.1_2160962_2161469_+,NA|133aa|down_1|NZ_CP012890.1_2161515_2161914_-,NA|262aa|down_4|NZ_CP012890.1_2169026_2169812_-	NA|299aa|up_9|NZ_CP012890.1_2146182_2147079_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|555aa|up_8|NZ_CP012890.1_2147066_2148731_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|237aa|up_7|NZ_CP012890.1_2148738_2149449_+	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|350aa|up_6|NZ_CP012890.1_2149468_2150518_+	NA	NA|159aa|up_5|NZ_CP012890.1_2151105_2151582_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|261aa|up_4|NZ_CP012890.1_2151753_2152536_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|107aa|up_3|NZ_CP012890.1_2152670_2152991_-	cd07046, BMC_PduU-EutS, 1,2-propanediol utilization protein U (PduU)/ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain	NA|82aa|up_2|NZ_CP012890.1_2154488_2154734_-	NA	NA|250aa|up_1|NZ_CP012890.1_2154925_2155675_-	pfam14478, DUF4430, Domain of unknown function (DUF4430)	NA|349aa|up_0|NZ_CP012890.1_2155709_2156756_-	NA	NA|169aa|down_0|NZ_CP012890.1_2160962_2161469_+	NA	NA|133aa|down_1|NZ_CP012890.1_2161515_2161914_-	NA	NA|366aa|down_2|NZ_CP012890.1_2162471_2163569_+	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|159aa|down_3|NZ_CP012890.1_2164633_2165110_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|262aa|down_4|NZ_CP012890.1_2169026_2169812_-	NA	NA|235aa|down_5|NZ_CP012890.1_2169875_2170580_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|136aa|down_6|NZ_CP012890.1_2170599_2171007_-	pfam02566, OsmC, OsmC-like protein	NA|391aa|down_7|NZ_CP012890.1_2171025_2172198_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|350aa|down_8|NZ_CP012890.1_2172387_2173437_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|446aa|down_9|NZ_CP012890.1_2173494_2174832_-	pfam03217, SLAP, SLAP domain
