The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	27282	70036	4111557	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	77634	123122	4111557	transposase,tRNA	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	165941	226447	4111557	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165941_166892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168335_169238_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170127_171558_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171591_172221_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175349_176300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177415_177943_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178034_178850_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182384_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183473_185378_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185374_189049_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189680_190103_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190130_190550_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190578_191025_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191803_194074_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194144_195350_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195448_196399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196501_197137_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197133_198027_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198421_199522_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199603_199978_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200037_202902_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203046_203787_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203856_205068_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205096_206065_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206678_207629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207785_208109_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208213_209254_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209259_210039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210084_210381_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210406_210682_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210738_211383_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211382_212069_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212267_213050_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213100_213826_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213857_215207_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215318_216251_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216708_219504_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220097_222941_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223111_223831_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223869_224418_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224572_225472_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225496_226447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	234379	287967	4111557	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234379_235330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235416_236367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236363_237314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237412_238210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239159_239570_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240591_241335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241378_242422_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242592_244695_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246105_247062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247080_247572_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247568_248924_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248924_249623_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249619_250321_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250573_251623_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251728_252670_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252666_254556_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254642_255281_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255423_256809_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256739_257276_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257427_258819_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258835_259816_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259951_260935_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260999_261899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262005_263760_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263767_264892_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264905_265886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266616_267567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268126_268672_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268797_270375_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270390_271545_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271558_271684_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271680_273432_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273428_275108_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275170_275719_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276861_277140_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278183_279134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279120_279336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279411_279573_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280239_280689_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280698_281310_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281468_282317_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282342_283725_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283789_284431_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284570_285029_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285053_285830_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285883_287020_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287016_287967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	391900	449409	4111557	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391900_392851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392987_393905_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393901_394150_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394146_395352_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395424_396420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396442_397663_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397659_398304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400034_400844_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401148_402102_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402200_403184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403110_403812_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403860_404631_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404627_405806_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405973_407680_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407676_408573_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408613_410203_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410252_411245_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411313_411913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412373_413354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413429_414380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414468_415383_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415379_416039_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416128_417052_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417057_417513_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417509_418613_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418571_418841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418800_420420_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420416_421475_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421604_422099_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422191_423169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423364_424570_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424566_426078_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426093_427407_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427597_427777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428186_428921_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431365_432316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432447_432846_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433256_433727_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433815_434160_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434259_435660_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437448_437967_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438077_438833_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439028_440261_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440253_441039_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441105_442077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442087_443065_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443190_444363_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444389_445418_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445483_446677_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448458_449409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	591463	652655	4111557	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591463_592414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592889_593780_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593776_594598_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594798_595290_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595308_596382_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596428_597532_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597607_598228_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598248_598758_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598812_599064_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599127_600261_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600268_600655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600651_603171_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603599_603938_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603934_604441_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604502_605303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605413_606355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606448_607984_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609663_611514_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611517_612351_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612350_613292_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613543_614515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614656_616945_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617251_618160_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618214_619180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619254_620916_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620987_621698_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621664_621829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621846_622797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623495_623879_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623936_624539_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624556_624958_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625073_625985_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625981_626563_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627357_628092_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628132_629182_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629329_629908_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630294_631272_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631365_635760_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635960_636809_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636967_637780_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637835_638786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638884_639685_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639746_640130_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640141_641494_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641781_642111_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642113_642863_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643045_643966_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644012_644225_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644247_644670_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644686_645787_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645883_647401_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647476_648316_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648337_649210_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649300_650395_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650688_651639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651713_652655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	657979	704170	4111557	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657979_659005_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659045_659285_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659354_660944_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660943_661492_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661572_662145_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662163_663075_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663148_664117_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664239_665313_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665317_667138_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667214_668165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668253_668589_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668722_669373_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669394_670813_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670882_671638_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671606_672365_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672375_673257_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673273_673981_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673983_674742_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674951_676694_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676686_677211_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677250_678045_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678212_679286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679384_680335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680586_680793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680864_681476_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682030_682282_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682274_682964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682981_683203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683220_684171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684810_685296_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685282_686560_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686562_687981_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688009_689065_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689070_689313_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689435_690038_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690466_691417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692091_692343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692405_692888_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692901_693090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693089_693485_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693481_693880_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693876_694299_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694306_694807_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695061_695580_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695589_695919_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695936_696227_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696252_698865_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698874_699234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699301_699835_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699831_700221_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700213_704170_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	710336	764266	4111557	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710336_712067_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712119_712548_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712550_713231_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713230_713689_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713725_714700_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714716_716033_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716064_716562_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716648_717338_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717337_718387_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718383_719178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719346_719697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719672_720230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721359_722310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724447_725677_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725679_727122_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727226_728372_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728403_729201_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729225_730785_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730781_733154_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733263_734367_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734366_735059_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735202_735904_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735888_736266_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736997_737948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738107_738980_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739320_739539_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739578_740958_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740999_742397_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742436_744089_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744092_744977_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744976_745918_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745996_747616_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747782_748598_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748665_749235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749235_750186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750840_751938_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751971_753237_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753394_754345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754588_755179_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755194_757639_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757758_758730_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758861_759386_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759345_760296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760517_762713_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762785_763193_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763315_764266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	887904	955880	4111557	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887904_888921_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889117_890101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891699_893088_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893118_894108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894218_895451_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895732_896533_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896555_898787_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899574_900021_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900042_900789_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900932_901910_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902543_903155_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903148_904366_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904506_905457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905453_906173_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906293_908453_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908543_908813_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908901_909108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909106_909634_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909652_910432_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910599_911616_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911688_912180_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912190_913906_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915069_916020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916016_917849_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918247_918907_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919434_920115_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920396_921113_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921127_922429_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924573_927462_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927685_929038_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929066_929588_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929584_931039_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931073_931322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931427_932303_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932328_933384_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933396_934188_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934220_935591_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936767_937718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937770_937992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938151_938364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938483_939602_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939698_939914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940107_940359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940471_941422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941418_941802_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941856_943671_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943820_944648_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944693_945674_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945670_945883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945879_947061_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947224_947959_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947960_950573_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950708_952622_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953237_953648_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953745_954831_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954929_955880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	999409	1071926	4111557	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999409_1000360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000464_1001514_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001651_1002668_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004176_1004749_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004808_1005540_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_054604398.1|1005591_1006509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007316_1010496_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010492_1011875_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011944_1012196_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012341_1012956_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013142_1015203_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015332_1016184_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016180_1016807_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016803_1018558_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018850_1021556_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021568_1023230_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023242_1025033_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025254_1026430_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026472_1027423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027521_1028262_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028456_1030493_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030510_1031521_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031638_1032832_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032861_1033635_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033631_1034822_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034847_1035786_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035782_1038131_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038285_1038927_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040256_1040409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040440_1040989_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041007_1041493_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041670_1042609_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042611_1042929_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042974_1043919_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045599_1046250_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046303_1046639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046635_1047496_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047512_1047794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047867_1048131_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048374_1049325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049623_1050361_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050796_1051120_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051154_1051715_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051835_1052711_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052723_1053671_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053772_1054066_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054092_1056150_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056164_1056665_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056738_1058445_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059308_1060361_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060413_1060803_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060811_1061444_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061543_1062560_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063390_1064398_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064394_1066038_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066034_1066922_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067062_1067536_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067525_1068548_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068544_1069972_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1070909_1071926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1075679	1136706	4111557	transposase,tRNA,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1075679_1076816_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076812_1077886_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078043_1079480_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079570_1080212_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_054604399.1|1080547_1081564_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081896_1084644_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084710_1086132_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086395_1087112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087196_1087514_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087554_1087968_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087969_1088329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088371_1089916_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089999_1090830_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090864_1092019_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092061_1092934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093050_1095339_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096545_1097010_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097036_1097987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098004_1098142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098354_1099131_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099175_1100033_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100054_1101071_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101205_1102246_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102440_1104522_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104757_1106251_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106481_1107276_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107496_1108855_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108851_1109694_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109712_1111599_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111540_1111792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111836_1112469_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112487_1113090_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113241_1114192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114772_1115480_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115838_1116825_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116964_1117978_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117974_1118925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118942_1119083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119037_1119496_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119532_1120846_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120863_1121235_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121231_1122695_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122835_1123564_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123545_1126395_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126607_1127558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127725_1128550_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128549_1129428_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130332_1131448_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131476_1132271_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132267_1134133_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134211_1134844_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134840_1135143_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135185_1136706_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1319002	1387489	4111557	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319002_1319953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320721_1321360_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322249_1322696_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322777_1323479_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323479_1324247_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324243_1325482_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325481_1326408_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326510_1327626_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327641_1328592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328945_1329527_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329523_1330357_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330567_1331881_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332057_1332939_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332958_1333810_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333862_1334951_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335061_1336189_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336423_1337035_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337133_1338084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338305_1338683_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338830_1339328_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339324_1339852_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339985_1340801_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340813_1341995_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342042_1342936_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343062_1343533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343658_1344486_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344514_1345291_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345287_1345563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345577_1346042_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346053_1346755_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346864_1347365_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347447_1348626_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350253_1350589_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350776_1352225_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352282_1352627_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352733_1353273_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353365_1354316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1354333_1354573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355054_1355486_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355667_1356072_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357308_1357632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357634_1358522_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358554_1358980_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359051_1359405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359644_1360151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360189_1361521_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361580_1362396_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362392_1363247_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366309_1368853_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370219_1371974_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371970_1374091_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374095_1376291_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376287_1379629_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382431_1383382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383447_1383627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383743_1384499_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384485_1385631_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386538_1387489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1447980	1503468	4111557	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447980_1448931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450132_1450579_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450571_1452047_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452043_1452799_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452791_1453802_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453791_1455468_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455780_1456113_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456126_1456522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456531_1456858_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456854_1457181_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457107_1458130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458126_1458477_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458524_1458953_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458960_1460334_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460474_1460852_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461114_1462422_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462482_1463313_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463309_1463798_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463839_1465360_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465403_1465880_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466683_1469281_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469310_1470132_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470858_1471608_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471791_1472670_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472767_1473484_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473498_1474059_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474225_1474990_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475009_1475867_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475863_1477063_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477102_1478437_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478489_1480826_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480951_1481515_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481523_1482615_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482686_1483142_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483142_1483937_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483933_1485115_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485101_1485707_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485703_1486477_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486488_1487316_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487477_1489841_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489908_1490628_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490751_1491177_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491211_1492162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492279_1493206_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493271_1494429_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494409_1494877_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495024_1495975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495991_1496426_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496415_1496766_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496962_1498117_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498113_1499286_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499333_1500227_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500272_1500710_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500769_1501459_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502517_1503468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1598164	1658072	4111557	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598164_1598653_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598770_1599349_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599454_1599823_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599921_1600872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600878_1601991_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602677_1603880_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604083_1606744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606756_1610161_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610828_1613054_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613100_1613427_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613477_1614086_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614184_1615135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615204_1615969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615965_1616502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616668_1617520_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617579_1618206_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618202_1619153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619251_1620364_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620353_1621355_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621460_1622972_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622968_1624273_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624384_1624945_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625212_1625767_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626222_1626438_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626692_1629290_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629286_1630474_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631128_1631743_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631831_1632953_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632970_1633876_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634768_1635719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635900_1636653_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636721_1637381_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637377_1638106_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638118_1640398_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640422_1640626_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640667_1641300_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641435_1642353_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642349_1643063_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643300_1644071_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644075_1644675_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644919_1646410_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646468_1646753_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647318_1648245_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648381_1649122_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649288_1650665_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650846_1651752_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653403_1655206_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655323_1655974_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656072_1657023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1657121_1658072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1666344	1744383	4111557	transposase	Planktothrix_phage(11.11%)	60	NA	NA
WP_005012067.1|1666344_1667295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1667393_1668188_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1668192_1669863_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1669986_1671036_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1671357_1672134_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1672198_1673101_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1674394_1675198_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1677891_1678278_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1678293_1680384_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1680435_1681389_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1681403_1682291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1682428_1683955_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1684053_1684554_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1684877_1686833_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1687000_1689085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1689111_1689897_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930466.1|1690752_1691523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1691522_1692263_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1692304_1693474_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1693505_1695590_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1695586_1696477_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1696473_1697571_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1697593_1698883_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1698894_1699920_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1699916_1701974_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1701987_1703163_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1703244_1704195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704253_1705027_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705019_1706576_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706572_1707523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708849_1709452_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709691_1710393_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710386_1711169_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711353_1712304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712402_1713140_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713329_1714088_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714134_1715124_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715301_1716270_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717809_1718778_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718786_1719728_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720201_1721212_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721202_1722717_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722713_1724060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724062_1725097_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725146_1726772_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727324_1728275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728379_1729327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729380_1731195_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731187_1731862_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731991_1735066_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735079_1735379_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735693_1736317_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736560_1737430_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737407_1738352_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738437_1739364_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739476_1740256_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740246_1741443_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741473_1742424_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742645_1743335_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1743432_1744383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1750114	1811462	4111557	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
WP_005013747.1|1750114_1751065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1751358_1752081_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752519_1753707_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1753710_1754061_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755810_1756782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756795_1757509_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757513_1758431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758537_1758834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1758932_1759883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1761041_1763975_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1763974_1764319_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1764315_1765944_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1765940_1766420_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1766419_1766701_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1766697_1767024_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1767179_1768130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1768173_1768716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1768813_1769662_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1769711_1770161_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1770157_1771159_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1771171_1771966_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1772014_1773916_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1773912_1774536_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1774662_1775787_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1776167_1777772_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1777927_1778704_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1778788_1779787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1779783_1780557_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1781541_1782492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1782515_1782980_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1783126_1784335_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1784378_1784816_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1784934_1786224_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1788964_1789915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1790013_1791030_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1791208_1792243_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1792239_1792866_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1792862_1793915_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1793964_1794735_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1794785_1795622_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1795817_1796558_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1796632_1797376_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1798037_1798811_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1799948_1801238_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1802848_1804096_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1804105_1805815_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1805811_1806750_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1806746_1808030_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1808033_1808516_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1808516_1809503_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1809675_1810395_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1810511_1811462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	1992645	2062296	4111557	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992645_1995303_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995380_1996583_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996579_1997092_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997214_1997652_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997928_1998879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998977_1999928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000091_2001987_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002100_2002268_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002331_2002568_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2002936_2004088_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005651_2006602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007053_2008055_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008227_2009085_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009081_2010344_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010444_2010819_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2010891_2012079_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012163_2012934_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013047_2013812_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013762_2015064_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015060_2015867_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017611_2018583_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018739_2019252_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019410_2020385_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021385_2022180_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022205_2023012_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023122_2023713_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023723_2024902_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025004_2025379_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025631_2026963_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027029_2030260_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031750_2032497_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032581_2033043_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033080_2034139_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034101_2035931_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035970_2036543_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037967_2038789_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039107_2040430_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040788_2041424_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041383_2042334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043204_2044077_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044154_2045294_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045652_2046909_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046914_2047442_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047446_2048265_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048264_2048987_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049008_2049323_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049340_2050489_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050519_2051395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051391_2052711_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052783_2053980_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053990_2055478_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058072_2058972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059109_2060075_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060173_2061124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061345_2062296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2073792	2124237	4111557	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2073792_2074743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075880_2076177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076351_2077704_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077846_2078863_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080842_2081856_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081942_2082848_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083004_2083349_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083506_2083965_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083978_2086195_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086191_2087253_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087281_2088256_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088207_2089026_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089038_2089647_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089821_2090217_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090235_2091675_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091703_2092051_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092069_2093020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093672_2094623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094706_2096524_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096597_2097245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097257_2098187_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098356_2098821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099068_2099749_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099797_2101489_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101504_2102056_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102052_2102424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102536_2103373_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103383_2103908_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104005_2104185_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104314_2105289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105419_2105776_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105765_2106641_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106739_2107624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107645_2108941_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109889_2110540_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110627_2112148_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112405_2114271_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115316_2116267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2116365_2117316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2117333_2117474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2118288_2118648_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2118635_2120072_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2120068_2120722_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2120718_2121912_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2122015_2123290_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2123286_2124237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2135441	2176132	4111557	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2135441_2136392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2136490_2137441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2137400_2137814_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2138098_2138398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2138807_2141090_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2141555_2141750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2141775_2143806_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2143825_2144038_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2144315_2144855_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2144968_2146264_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2146340_2147498_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2147681_2148581_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2148599_2149904_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2149869_2150976_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2151063_2151300_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2151438_2152509_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2152512_2153868_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2153894_2155052_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2155057_2155696_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2155697_2156993_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2157042_2158329_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2158344_2158851_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2158847_2159996_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2160023_2160449_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2160771_2163654_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2163746_2164502_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2165267_2166617_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2166715_2167666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2167764_2168715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2168788_2169262_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2169287_2170496_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2170492_2171266_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2171265_2171889_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2172054_2172315_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2172618_2173200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2173266_2173521_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2173507_2176132_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2203915	2269464	4111557	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2203915_2204866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2205066_2205876_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2206000_2206951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2206947_2207841_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2207965_2208160_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2208159_2208501_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2208510_2210373_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2210502_2211015_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2211017_2211341_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2211342_2211753_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2211790_2213002_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2213019_2213532_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2213747_2214239_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2214491_2216528_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2216605_2217808_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2217936_2218587_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2220144_2221095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2221665_2221878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2221895_2222627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2222661_2223303_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2223295_2223964_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2226176_2226953_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2226974_2228132_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2228128_2228560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2228556_2229354_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2229373_2229775_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2229841_2230813_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2230878_2232102_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2232329_2233280_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2233403_2235857_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2236045_2237350_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2237454_2238108_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2238110_2239421_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2239599_2240178_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2240289_2240490_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2240835_2241402_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2241485_2241689_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2241995_2242316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2242357_2242639_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2242713_2243970_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2244352_2244682_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2246252_2247074_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2247073_2248213_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2248219_2249116_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2249130_2251038_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2251397_2254010_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2254062_2256363_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2256359_2257568_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2257829_2258204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2258200_2259151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2259249_2261244_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2261303_2262269_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2262258_2265120_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2265122_2265629_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2265733_2266942_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2266943_2267882_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2268043_2268517_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2268513_2269464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2354592	2428779	4111557	transposase,protease	uncultured_Caudovirales_phage(10.0%)	59	NA	NA
WP_010931070.1|2354592_2355543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355844_2356321_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356944_2358582_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358612_2359926_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360059_2360377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360477_2361800_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361796_2362747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2363276_2364299_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2364327_2365158_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2365174_2366872_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2366936_2368013_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2368172_2369036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2369066_2369636_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2369652_2370504_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2371561_2372443_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2372517_2373507_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2373569_2374520_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2374582_2375440_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2375499_2375988_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2377560_2378751_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2378747_2380334_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2380352_2381420_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2381524_2383069_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2383488_2385063_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2385179_2386187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2386183_2387023_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2387027_2388665_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2388661_2389612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2389629_2389773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2389754_2391029_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2391058_2391349_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2391421_2392435_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2392454_2393717_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2393719_2394643_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2394639_2396133_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2396143_2397076_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2397257_2398583_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2398617_2399973_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2400033_2401554_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2401708_2402440_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2402537_2403848_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2403863_2404775_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2404765_2405359_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2405420_2405807_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2405818_2406289_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2406300_2406924_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2406944_2409692_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2416169_2417120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930867.1|2417163_2418627_+	ribonuclease G	NA	NA	NA	NA	NA
WP_010930868.1|2418660_2419563_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_003813206.1|2419559_2420105_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930869.1|2420188_2421688_+	MFS transporter	NA	NA	NA	NA	NA
WP_003813209.1|2421660_2423436_-	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
WP_010926806.1|2423547_2424513_+	heptosyltransferase II	NA	NA	NA	NA	NA
WP_010930871.1|2424525_2425290_+	YdcF family protein	NA	NA	NA	NA	NA
WP_003813217.1|2425294_2425567_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_019247284.1|2425691_2426846_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_033446280.1|2426820_2427528_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010929956.1|2427828_2428779_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2538316	2604037	4111557	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_005012067.1|2538316_2539267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540256_2541177_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541196_2541784_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541776_2542667_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542663_2543425_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543430_2544315_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544337_2546131_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546261_2547749_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547786_2548845_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548844_2549345_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549357_2549957_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549953_2550454_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550455_2551685_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551874_2552114_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552296_2553049_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553050_2553986_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554067_2555054_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555053_2556112_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556168_2556351_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556402_2556996_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557104_2557704_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557700_2558411_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558412_2559240_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561056_2562298_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562309_2563083_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563109_2564060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564158_2564941_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565029_2566256_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566981_2568367_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568385_2568991_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568987_2570844_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570840_2571641_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571655_2572849_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572916_2573891_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574013_2575237_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575347_2577552_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577846_2578506_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578513_2578720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579058_2579814_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580084_2580600_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580872_2581190_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581377_2581614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581904_2583260_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583306_2584647_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584748_2585381_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585380_2587750_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587782_2588742_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588728_2589415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589411_2589744_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589859_2590810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590908_2591859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591855_2593922_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593921_2594194_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594888_2594978_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594977_2596762_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596785_2598951_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598961_2599561_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602382_2603078_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603086_2604037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2690154	2730824	4111557	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690154_2691105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691215_2691398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691497_2692094_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692277_2693369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693868_2694279_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694337_2694667_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694684_2697102_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697114_2698137_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698211_2698571_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698586_2698784_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699119_2700070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700264_2700714_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700710_2701661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701771_2703220_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703334_2703580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703719_2704670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704914_2705628_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705750_2705978_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706272_2706911_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707019_2708054_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708050_2709001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709416_2709941_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709944_2710214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710412_2711474_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711557_2713192_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713193_2713997_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714025_2714985_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2714988_2716503_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2716539_2717802_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2717976_2718447_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718482_2719094_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719124_2719748_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719828_2721361_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721395_2722613_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722680_2723712_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723708_2724878_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724871_2725552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725713_2726556_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726718_2727690_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727861_2728740_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728762_2729833_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729873_2730824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2734935	2811785	4111557	transposase,tRNA	Bacillus_virus(25.0%)	57	NA	NA
WP_005013747.1|2734935_2735886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247980.1|2736007_2736325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247978.1|2736635_2737049_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2737062_2738298_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2738305_2739100_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2739096_2739900_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2739926_2740904_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2740932_2742504_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2742514_2743336_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2745060_2746491_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2746503_2747193_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2747288_2748629_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2748630_2748888_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2749241_2750834_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2750930_2752391_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2752613_2753225_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2756971_2757922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2758337_2760974_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2760970_2762095_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2762091_2763474_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2763609_2764077_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2764198_2764867_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_010931045.1|2764939_2766142_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2766143_2767874_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2767991_2768300_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2768312_2769125_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2770005_2772171_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2772296_2773085_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2773124_2774729_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2774809_2775550_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2775557_2776052_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2776424_2777444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2777440_2778823_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2778855_2779716_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2780719_2781601_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2781659_2782097_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2782187_2783159_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2783197_2784142_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2784237_2785047_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2785123_2785498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2785604_2786297_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2786289_2786706_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786816_2787449_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787477_2787921_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787942_2789034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789088_2789889_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790024_2790645_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790784_2791258_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792397_2793348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793344_2801006_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801246_2805293_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805605_2806187_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806183_2807482_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807561_2808590_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808850_2809801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809797_2810748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2810834_2811785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2817169	2874327	4111557	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2817169_2818120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819281_2819788_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819784_2820549_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820564_2820849_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820913_2821903_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822074_2823004_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822975_2823662_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823695_2824241_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824285_2825551_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825547_2826450_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827631_2828576_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828670_2830188_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830229_2831858_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831965_2832847_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835959_2836334_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836358_2836697_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836740_2838375_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_054604397.1|2838413_2839760_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2839867_2841289_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841358_2841943_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842045_2842996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843130_2844237_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844247_2845345_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845489_2846695_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846701_2847223_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2847219_2847702_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847707_2847959_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847939_2848425_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848560_2852022_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852039_2852924_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852933_2853365_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853611_2854115_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854192_2855593_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855667_2856543_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856539_2857547_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858014_2858320_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858410_2859001_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859191_2860208_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860399_2862736_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862818_2863253_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863351_2864302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864400_2865351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865347_2866142_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866173_2866878_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866952_2867753_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867749_2868157_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868153_2868795_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868787_2870788_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872048_2873380_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873376_2874327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2888802	2930161	4111557	transposase,protease	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2888802_2889753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2889770_2889929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890083_2893905_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894061_2894730_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894734_2896408_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896426_2897746_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897750_2900066_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900121_2902290_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2902286_2907467_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907565_2907880_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908107_2908353_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908447_2908966_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909065_2910271_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910386_2911784_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911900_2912479_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912551_2913943_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914110_2915061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915341_2915962_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915958_2916372_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916368_2917412_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917467_2917656_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917665_2918430_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918520_2919177_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919268_2920027_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920052_2921654_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921854_2922859_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922959_2923223_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923340_2924117_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924707_2925658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928041_2929154_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929210_2930161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	2960547	3014778	4111557	transposase	Planktothrix_phage(16.67%)	50	NA	NA
WP_005012067.1|2960547_2961498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961515_2961665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961618_2962515_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964792_2967018_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967182_2968271_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968227_2968881_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968928_2969726_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970257_2971208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971288_2972437_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972493_2973444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973542_2973848_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973876_2974311_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974312_2975557_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975553_2976264_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976278_2977190_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977552_2977957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977953_2978412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978418_2979327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979323_2980190_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980176_2981004_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981014_2982142_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983219_2984458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984499_2985762_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985768_2986521_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986572_2986758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987033_2987498_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987529_2988189_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988333_2990442_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990438_2991389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991492_2992113_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992216_2992957_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994091_2995216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995261_2995630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995871_2996822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997857_2998400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998597_2998768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998785_2999736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999732_3000641_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000767_3001604_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002116_3003226_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003287_3004238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3004430_3005213_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3005226_3005991_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3006003_3007350_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3007375_3008305_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3008420_3009326_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3009343_3010543_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3010615_3011308_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3011356_3013783_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3013827_3014778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	3385158	3438899	4111557	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385158_3386109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386513_3387158_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387182_3387767_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387867_3388485_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388487_3390203_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390199_3390508_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390524_3391142_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391186_3391489_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391589_3392444_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392631_3392856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393025_3393298_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393715_3394123_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394492_3395287_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395387_3396623_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396691_3397708_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397719_3399096_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399092_3400289_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400285_3401824_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401820_3403080_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405020_3405971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406737_3407832_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407824_3409159_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409112_3409796_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409821_3410985_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410981_3411983_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411982_3412855_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412851_3413601_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413597_3414389_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414385_3415525_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415800_3416586_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416619_3417402_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417405_3417795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3418934_3419798_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419833_3420922_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420918_3421869_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422222_3425201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426127_3427006_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428954_3429905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429901_3430369_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430411_3431182_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431202_3432003_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432013_3433423_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433517_3434303_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434542_3435559_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435666_3436059_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436196_3436877_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436881_3437853_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3437948_3438899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	3445054	3504354	4111557	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3445054_3446818_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446929_3447808_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447920_3448736_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448739_3448991_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449075_3450092_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450422_3450644_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453004_3453922_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454419_3455628_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455707_3457279_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457396_3458332_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458520_3459465_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460032_3465750_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465755_3466883_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466938_3467565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467836_3468853_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468948_3469659_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469655_3470645_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470740_3472372_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472374_3473112_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473267_3474140_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474489_3475629_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475625_3476285_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476356_3476989_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477018_3477537_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477547_3478657_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478703_3479558_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479559_3480462_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481684_3482635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484391_3485381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485556_3486345_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486341_3487373_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487391_3487955_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488010_3489531_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489794_3490499_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490506_3491235_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491349_3491724_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491766_3493056_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493052_3494222_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494218_3495058_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495117_3496053_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496065_3497016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497114_3498077_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498108_3498468_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498592_3499495_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499496_3501269_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501303_3502080_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503403_3504354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	3519292	3577365	4111557	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519292_3520243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520371_3521505_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521548_3522454_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522456_3524157_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524153_3525074_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525081_3526059_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526117_3527152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529126_3529363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529489_3530353_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530441_3531263_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531342_3532080_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532076_3533069_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533221_3533845_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533889_3535038_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537361_3538312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538652_3539603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539701_3540652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540948_3541446_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541488_3543264_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543271_3544138_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544144_3544879_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546048_3546843_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547132_3547723_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547756_3549085_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549159_3550305_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550416_3551415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551377_3551812_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553328_3554213_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554209_3555415_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555411_3556272_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556384_3558175_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558215_3558860_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558881_3559190_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559355_3560642_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562075_3563026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564977_3566192_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566297_3567287_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567283_3567892_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567904_3568534_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568530_3569151_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569182_3569974_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570825_3571281_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571299_3572226_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572279_3573566_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574496_3575369_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575365_3576316_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576414_3577365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011448	Bordetella pertussis strain B3921 chromosome, complete genome	4111557	4009576	4074488	4111557	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009576_4010062_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010150_4010288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010280_4011261_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011527_4012337_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012376_4013057_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013050_4013509_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013520_4013883_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013965_4014649_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014704_4015013_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015031_4015346_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015342_4017817_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017824_4019216_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019212_4019398_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019376_4020078_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020074_4020896_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020876_4022001_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021993_4023013_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023218_4024109_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024353_4025145_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025227_4025602_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025579_4026989_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026981_4028364_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028698_4030303_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030380_4031352_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031362_4032289_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032679_4033630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033799_4035026_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035225_4036092_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036084_4037047_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037147_4038098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038196_4039147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039245_4040196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040192_4041686_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041682_4044790_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044786_4047855_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047851_4049102_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049282_4050035_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050076_4050721_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050729_4051710_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051809_4052553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052635_4052983_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053080_4053923_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053967_4054855_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054881_4055070_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055167_4056625_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056611_4058138_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058156_4058624_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058623_4059646_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059766_4060507_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060561_4061662_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061663_4062854_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062973_4063990_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064308_4064980_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064976_4065885_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066096_4066744_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070604_4071672_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071682_4072492_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072581_4073355_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023998031.1|4073355_4073520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|4073537_4074488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
