The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	27282	70036	4109548	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	77634	123122	4109548	transposase,tRNA	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	165951	226457	4109548	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165951_166902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168345_169248_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169225_169855_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170137_171568_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171601_172231_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172279_173887_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173911_174595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174676_175153_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175359_176310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177425_177953_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178044_178860_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178920_179655_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179692_181771_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182020_182293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182394_183480_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183483_185388_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185384_189059_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189119_189683_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189690_190113_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190140_190560_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190588_191035_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191161_191659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191813_194084_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194154_195360_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195458_196409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196511_197147_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197143_198037_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198431_199532_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199613_199988_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200047_202912_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203056_203797_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203866_205078_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205106_206075_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206688_207639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207795_208119_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208223_209264_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209269_210049_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210094_210391_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210416_210692_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210748_211393_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211392_212079_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212277_213060_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213110_213836_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213867_215217_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215328_216261_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216718_219514_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220107_222951_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223121_223841_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223879_224428_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224582_225482_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225506_226457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	234389	287977	4109548	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234389_235340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235426_236377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236373_237324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237422_238220_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239169_239580_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240601_241345_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241388_242432_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242602_244705_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246115_247072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247090_247582_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247578_248934_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248934_249633_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249629_250331_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250583_251633_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251738_252680_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252676_254566_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254652_255291_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255433_256819_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256749_257286_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257437_258829_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258845_259826_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259961_260945_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261009_261909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262015_263770_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263777_264902_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264915_265896_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266626_267577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268136_268682_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268807_270385_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270400_271555_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271568_271694_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271690_273442_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273438_275118_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275180_275729_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276871_277150_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278193_279144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279130_279346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279421_279583_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280249_280699_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280708_281320_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281478_282327_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282352_283735_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283799_284441_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284580_285039_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285063_285840_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285893_287030_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287026_287977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	391910	449419	4109548	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391910_392861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392997_393915_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393911_394160_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394156_395362_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395434_396430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396452_397673_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397669_398314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400044_400854_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401158_402112_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402210_403194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403120_403822_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403870_404641_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404637_405816_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405983_407690_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407686_408583_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408623_410213_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410262_411255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411323_411923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412383_413364_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413439_414390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414478_415393_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415389_416049_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416138_417062_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417067_417523_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417519_418623_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418581_418851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418810_420430_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420426_421485_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421614_422109_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422201_423179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423374_424580_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424576_426088_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426103_427417_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427607_427787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428196_428931_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431375_432326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432457_432856_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433266_433737_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433825_434170_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434269_435670_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437458_437977_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438087_438843_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439038_440271_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440263_441049_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441115_442087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442097_443075_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443200_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444399_445428_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445493_446687_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448468_449419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	591473	652664	4109548	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591473_592424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592899_593790_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593786_594608_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594807_595299_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595317_596391_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596437_597541_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597616_598237_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598257_598767_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598821_599073_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599136_600270_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600277_600664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600660_603180_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603608_603947_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603943_604450_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604511_605312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605422_606364_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606457_607993_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609672_611523_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611526_612360_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612359_613301_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613552_614524_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614665_616954_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617260_618169_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618223_619189_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619263_620925_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620996_621707_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621855_622806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623504_623888_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623945_624548_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624565_624967_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625082_625994_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625990_626572_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627366_628101_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628141_629191_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629338_629917_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630303_631281_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631374_635769_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635969_636818_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636976_637789_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637844_638795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638893_639694_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639755_640139_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640150_641503_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641790_642120_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642122_642872_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643054_643975_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644021_644234_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644256_644679_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644695_645796_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645892_647410_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647485_648325_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648346_649219_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649309_650404_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650697_651648_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651722_652664_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	657988	704179	4109548	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657988_659014_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659054_659294_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659363_660953_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660952_661501_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661581_662154_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662172_663084_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663157_664126_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664248_665322_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665326_667147_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667223_668174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668262_668598_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668731_669382_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669403_670822_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670891_671647_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671615_672374_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672384_673266_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673282_673990_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673992_674751_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674960_676703_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676695_677220_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677259_678054_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678221_679295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679393_680344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680595_680802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680873_681485_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682039_682291_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682283_682973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683229_684180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684819_685305_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685291_686569_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686571_687990_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688018_689074_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689079_689322_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689444_690047_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690475_691426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692100_692352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692414_692897_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692910_693099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693098_693494_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693490_693889_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693885_694308_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694315_694816_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695070_695589_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695598_695928_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695945_696236_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696261_698874_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698883_699243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699310_699844_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699840_700230_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700222_704179_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	710345	764275	4109548	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710345_712076_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712128_712557_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712559_713240_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713239_713698_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713734_714709_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714725_716042_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716073_716571_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716657_717347_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717346_718396_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718392_719187_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719355_719706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719681_720239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721368_722319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724456_725686_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725688_727131_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727235_728381_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728412_729210_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729234_730794_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730790_733163_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733272_734376_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734375_735068_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735211_735913_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735897_736275_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737006_737957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738116_738989_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739329_739548_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739587_740967_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741008_742406_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742445_744098_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744101_744986_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744985_745927_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746005_747625_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747791_748607_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748674_749244_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749244_750195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750849_751947_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751980_753246_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753403_754354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754597_755188_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755203_757648_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757767_758739_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758870_759395_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759354_760305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760526_762722_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762794_763202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763324_764275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	887913	955889	4109548	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887913_888930_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889126_890110_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891708_893097_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893127_894117_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894227_895460_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895741_896542_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896564_898796_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899583_900030_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900051_900798_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900941_901919_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902552_903164_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903157_904375_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904515_905466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905462_906182_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906302_908462_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908552_908822_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908910_909117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909115_909643_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909661_910441_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910608_911625_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911697_912189_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912199_913915_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915078_916029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916025_917858_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918256_918916_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919443_920124_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920405_921122_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921136_922438_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924582_927471_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927694_929047_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929075_929597_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929593_931048_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931082_931331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931436_932312_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932337_933393_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933405_934197_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934229_935600_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936776_937727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937779_938001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938160_938373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938492_939611_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939707_939923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940116_940368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940480_941431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941427_941811_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941865_943680_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943829_944657_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944702_945683_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945679_945892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945888_947070_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947233_947968_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947969_950582_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950717_952631_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953246_953657_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953754_954840_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954938_955889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	999418	1071935	4109548	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999418_1000369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000473_1001523_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001660_1002677_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004185_1004758_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004817_1005549_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005600_1006518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007325_1010505_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010501_1011884_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011953_1012205_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012350_1012965_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013151_1015212_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015341_1016193_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016189_1016816_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016812_1018567_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018859_1021565_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021577_1023239_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023251_1025042_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025263_1026439_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026481_1027432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027530_1028271_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028465_1030502_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030519_1031530_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031647_1032841_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032870_1033644_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033640_1034831_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034856_1035795_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035791_1038140_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038294_1038936_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040265_1040418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040449_1040998_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041016_1041502_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041679_1042618_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042620_1042938_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042983_1043928_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045608_1046259_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046312_1046648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046644_1047505_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047521_1047803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047876_1048140_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010929969.1|1048383_1049334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049632_1050370_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050805_1051129_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051163_1051724_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051844_1052720_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052732_1053680_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053781_1054075_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054101_1056159_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056173_1056674_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056747_1058454_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059317_1060370_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060422_1060812_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060820_1061453_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061552_1062569_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063399_1064407_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064403_1066047_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066043_1066931_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067071_1067545_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067534_1068557_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068553_1069981_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1070918_1071935_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1075688	1136715	4109548	tRNA,holin,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1075688_1076825_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076821_1077895_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078052_1079489_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079579_1080221_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080556_1081573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081905_1084653_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084719_1086141_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086404_1087121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087205_1087523_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087563_1087977_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087978_1088338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088380_1089925_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090008_1090839_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090873_1092028_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092070_1092943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093059_1095348_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096554_1097019_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097045_1097996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098363_1099140_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099184_1100042_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100063_1101080_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101214_1102255_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102449_1104531_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104766_1106260_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106490_1107285_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107505_1108864_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108860_1109703_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109721_1111608_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111549_1111801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111845_1112478_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112496_1113099_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113250_1114201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114781_1115489_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115847_1116834_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116973_1117987_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117983_1118934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119046_1119505_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119541_1120855_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120872_1121244_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121240_1122704_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122844_1123573_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123554_1126404_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126616_1127567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127734_1128559_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128558_1129437_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130341_1131457_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131485_1132280_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132276_1134142_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134220_1134853_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134849_1135152_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135194_1136715_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1154285	1219876	4109548	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1154285_1156082_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156081_1157050_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157119_1157965_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158032_1158587_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158633_1159584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159682_1160315_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160486_1162769_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162923_1165620_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165745_1166234_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168644_1171515_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171560_1172775_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173004_1174432_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174529_1175621_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175633_1176392_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176479_1177382_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177378_1178329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178458_1179442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179496_1180219_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181697_1183053_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183133_1185509_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185673_1187749_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187810_1188605_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188712_1189675_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189662_1190418_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190525_1192163_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192230_1192968_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193070_1193646_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193818_1194355_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194387_1194702_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194717_1195563_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195601_1196981_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197058_1197940_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198038_1198989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198985_1199396_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199503_1200358_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200350_1201313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201358_1202483_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202588_1203467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203591_1204371_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204524_1205946_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206380_1208078_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208304_1209246_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209572_1210319_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210326_1211253_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211374_1212292_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212331_1213285_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213309_1213888_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215561_1216170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216247_1216601_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216684_1217674_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217876_1218827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218925_1219876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1319012	1384441	4109548	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1319012_1319963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320731_1321370_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322259_1322706_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322787_1323489_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323489_1324257_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324253_1325492_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325491_1326418_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326520_1327636_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327651_1328602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328955_1329537_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329533_1330367_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330577_1331891_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332067_1332949_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332968_1333820_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333872_1334961_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335071_1336199_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336433_1337045_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337143_1338094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338315_1338693_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338840_1339338_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339334_1339862_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339995_1340811_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340823_1342005_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342052_1342946_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343072_1343543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343668_1344496_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344524_1345301_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345297_1345573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345587_1346052_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346063_1346765_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346874_1347375_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347457_1348636_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350263_1350599_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350786_1352235_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352292_1352637_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352743_1353283_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353375_1354326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354424_1355375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355473_1355881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356113_1356545_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356726_1357131_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358367_1358691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358693_1359581_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359613_1360039_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360110_1360464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360703_1361210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361248_1362580_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362639_1363455_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363451_1364306_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367368_1369912_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371278_1373033_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373029_1375150_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375154_1377350_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377346_1380688_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383490_1384441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1449039	1504527	4109548	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449039_1449990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451191_1451638_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451630_1453106_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453102_1453858_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453850_1454861_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454850_1456527_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456839_1457172_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457185_1457581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457590_1457917_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457913_1458240_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458166_1459189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459185_1459536_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459583_1460012_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460019_1461393_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461533_1461911_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462173_1463481_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463541_1464372_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464368_1464857_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464898_1466419_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466462_1466939_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467742_1470340_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470369_1471191_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471917_1472667_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472850_1473729_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473826_1474543_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474557_1475118_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475284_1476049_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476068_1476926_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476922_1478122_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478161_1479496_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479548_1481885_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482010_1482574_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482582_1483674_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483745_1484201_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484201_1484996_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484992_1486174_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486160_1486766_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486762_1487536_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487547_1488375_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488536_1490900_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490967_1491687_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491810_1492236_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492270_1493221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493338_1494265_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494330_1495488_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495468_1495936_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496083_1497034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497050_1497485_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497474_1497825_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498021_1499176_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499172_1500345_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500392_1501286_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501331_1501769_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501828_1502518_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502527_1503478_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503576_1504527_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1599223	1667308	4109548	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1599223_1599712_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599829_1600408_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600513_1600882_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600980_1601931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601937_1603050_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603736_1604939_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605142_1607803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607815_1611220_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611887_1614113_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614159_1614486_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614536_1615145_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615243_1616194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616263_1617028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617024_1617561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617727_1618579_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618638_1619265_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619261_1620212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620310_1621423_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621412_1622414_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622519_1624031_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624027_1625332_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625443_1626004_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626271_1626826_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627281_1627497_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627751_1630349_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630345_1631533_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632190_1632805_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632893_1634015_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634032_1634938_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635830_1636781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636962_1637715_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637783_1638443_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638439_1639168_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639180_1641460_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641484_1641688_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641729_1642362_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642497_1643415_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643411_1644125_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644362_1645133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645137_1645737_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645981_1647472_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647530_1647815_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648380_1649307_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649443_1650184_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650350_1651727_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651908_1652814_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654465_1656268_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656385_1657036_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657134_1658085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658106_1659327_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659512_1660925_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660988_1662056_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662055_1663543_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663552_1664497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664656_1665355_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665432_1666338_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666357_1667308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1703257	1758848	4109548	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703257_1704208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704266_1705040_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705032_1706589_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706585_1707536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708862_1709465_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709704_1710406_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710399_1711182_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711366_1712317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712415_1713153_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713342_1714101_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714147_1715137_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715314_1716283_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717822_1718791_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718799_1719741_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720214_1721225_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721215_1722730_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722726_1724073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724075_1725110_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725159_1726785_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727337_1728288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728392_1729340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729393_1731208_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731200_1731875_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732004_1735079_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735092_1735392_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735706_1736330_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736573_1737443_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737420_1738365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738450_1739377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739489_1740269_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740259_1741456_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741486_1742437_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742658_1743348_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743412_1744168_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744219_1745212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745221_1746175_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746290_1747253_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748654_1749083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749079_1750030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750323_1751046_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751484_1752672_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752675_1753026_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754775_1755747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755760_1756474_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756478_1757396_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757502_1757799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757897_1758848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	1991612	2061263	4109548	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991612_1994270_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994347_1995550_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995546_1996059_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996181_1996619_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996895_1997846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997944_1998895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999058_2000954_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001067_2001235_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001298_2001535_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001903_2003055_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004618_2005569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006020_2007022_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007194_2008052_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008048_2009311_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009411_2009786_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009858_2011046_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011130_2011901_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012014_2012779_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012729_2014031_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014027_2014834_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016578_2017550_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017706_2018219_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018377_2019352_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020352_2021147_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021172_2021979_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022089_2022680_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022690_2023869_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023971_2024346_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024598_2025930_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025996_2029227_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030717_2031464_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031548_2032010_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032047_2033106_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033068_2034898_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034937_2035510_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036934_2037756_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038074_2039397_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039755_2040391_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040350_2041301_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042171_2043044_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043121_2044261_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044619_2045876_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045881_2046409_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046413_2047232_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047231_2047954_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047975_2048290_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048307_2049456_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049486_2050362_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050358_2051678_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051750_2052947_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052957_2054445_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057039_2057939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058076_2059042_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059140_2060091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060312_2061263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2072759	2122155	4109548	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072759_2073710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074847_2075144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075318_2076671_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076813_2077830_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079809_2080823_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080909_2081815_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081971_2082316_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082473_2082932_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082945_2085162_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085158_2086220_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086248_2087223_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087174_2087993_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2088005_2088614_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088788_2089184_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089202_2090642_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090670_2091018_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091036_2091987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092639_2093590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093673_2095491_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095564_2096212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096224_2097154_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097323_2097788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098035_2098716_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098764_2100456_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100471_2101023_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101019_2101391_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101503_2102340_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102350_2102875_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102972_2103152_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103281_2104256_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104386_2104743_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104732_2105608_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105706_2106591_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106612_2107908_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108856_2109507_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109594_2111115_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111372_2113238_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114283_2115234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115251_2115392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116206_2116566_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116553_2117990_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117986_2118640_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118636_2119830_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119933_2121208_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121204_2122155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2133359	2174050	4109548	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133359_2134310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134408_2135359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135318_2135732_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136016_2136316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136725_2139008_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139473_2139668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139693_2141724_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141743_2141956_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142233_2142773_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142886_2144182_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144258_2145416_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145599_2146499_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146517_2147822_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147787_2148894_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148981_2149218_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149356_2150427_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150430_2151786_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151812_2152970_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152975_2153614_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153615_2154911_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154960_2156247_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156262_2156769_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156765_2157914_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157941_2158367_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158689_2161572_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161664_2162420_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163185_2164535_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164633_2165584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165682_2166633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166706_2167180_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167205_2168414_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168410_2169184_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169183_2169807_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169972_2170233_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170536_2171118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171184_2171439_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171425_2174050_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2201833	2267381	4109548	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201833_2202784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202984_2203794_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203918_2204869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204865_2205759_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205883_2206078_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206077_2206419_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206428_2208291_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208420_2208933_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208935_2209259_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209260_2209671_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209708_2210920_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210937_2211450_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211665_2212157_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212409_2214446_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214523_2215726_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215854_2216505_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218062_2219013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219583_2219796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219813_2220545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220579_2221221_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221213_2221882_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224094_2224871_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224892_2226050_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226046_2226478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226474_2227272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227291_2227693_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227759_2228731_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228796_2230020_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230247_2231198_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231321_2233775_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233963_2235268_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235372_2236026_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236028_2237339_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237517_2238096_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238207_2238408_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238753_2239320_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239403_2239607_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239913_2240234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240275_2240557_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240631_2241888_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242270_2242600_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244169_2244991_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244990_2246130_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246136_2247033_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247047_2248955_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249314_2251927_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251979_2254280_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254276_2255485_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255746_2256121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256117_2257068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257166_2259161_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259220_2260186_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260175_2263037_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263039_2263546_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263650_2264859_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264860_2265799_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265960_2266434_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266430_2267381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2353558	2427746	4109548	transposase,protease	uncultured_Caudovirales_phage(10.0%)	58	NA	NA
WP_010931070.1|2353558_2354509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354810_2355287_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355910_2357548_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2357578_2358892_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2359025_2359343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2359443_2360766_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360762_2361713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362242_2363265_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363293_2364124_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364140_2365838_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365902_2366979_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367138_2368002_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368032_2368602_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2368618_2369470_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370527_2371409_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371483_2372473_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372535_2373486_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373548_2374406_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374465_2374954_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376526_2377717_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377713_2379300_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379318_2380386_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380490_2382035_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382454_2384029_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2384145_2385153_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385149_2385989_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385993_2387631_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387627_2388578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2388720_2389995_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390024_2390315_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390387_2391401_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391420_2392683_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392685_2393609_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393605_2395099_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395109_2396042_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396223_2397549_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2397583_2398939_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398999_2400520_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400674_2401406_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2401503_2402814_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402829_2403741_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403731_2404325_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404386_2404773_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404784_2405255_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405266_2405890_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405910_2408658_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_014905499.1|2415136_2416087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930867.1|2416130_2417594_+	ribonuclease G	NA	NA	NA	NA	NA
WP_010930868.1|2417627_2418530_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_003813206.1|2418526_2419072_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930869.1|2419155_2420655_+	MFS transporter	NA	NA	NA	NA	NA
WP_003813209.1|2420627_2422403_-	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
WP_010926806.1|2422514_2423480_+	heptosyltransferase II	NA	NA	NA	NA	NA
WP_010930871.1|2423492_2424257_+	YdcF family protein	NA	NA	NA	NA	NA
WP_003813217.1|2424261_2424534_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_019247284.1|2424658_2425813_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_033446280.1|2425787_2426495_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010929956.1|2426795_2427746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2537284	2603005	4109548	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_005012067.1|2537284_2538235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2539224_2540145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2540164_2540752_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2540744_2541635_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2541631_2542393_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2542398_2543283_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2543305_2545099_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2545229_2546717_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546754_2547813_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2547812_2548313_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2548325_2548925_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548921_2549422_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2549423_2550653_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550842_2551082_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2551264_2552017_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2552018_2552954_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2553035_2554022_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2554021_2555080_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2555136_2555319_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2555370_2555964_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2556072_2556672_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556668_2557379_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2557380_2558208_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2560024_2561266_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561277_2562051_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562077_2563028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563126_2563909_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563997_2565224_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565949_2567335_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567353_2567959_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567955_2569812_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569808_2570609_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570623_2571817_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571884_2572859_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572981_2574205_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574315_2576520_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576814_2577474_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577481_2577688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578026_2578782_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579052_2579568_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579840_2580158_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580345_2580582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580872_2582228_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582274_2583615_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583716_2584349_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584348_2586718_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586750_2587710_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587696_2588383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588379_2588712_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588827_2589778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589876_2590827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590823_2592890_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592889_2593162_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593856_2593946_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593945_2595730_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595753_2597919_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597929_2598529_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2601350_2602046_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2602054_2603005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2689122	2729791	4109548	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689122_2690073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690183_2690366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690465_2691062_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691245_2692337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692836_2693247_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693305_2693635_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693652_2696070_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696082_2697105_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697179_2697539_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697554_2697752_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698087_2699038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699232_2699682_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699678_2700629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700739_2702188_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702302_2702548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702687_2703638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703882_2704596_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704718_2704946_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705240_2705879_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705987_2707022_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707018_2707969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708384_2708909_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708912_2709182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709380_2710442_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710525_2712160_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712161_2712965_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712993_2713953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713956_2715471_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715507_2716512_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716943_2717414_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717449_2718061_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718091_2718715_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718795_2720328_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720362_2721580_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721647_2722679_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722675_2723845_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723838_2724519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724680_2725523_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725685_2726657_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726828_2727707_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727729_2728800_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728840_2729791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2785256	2858126	4109548	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785256_2785673_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785783_2786416_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786444_2786888_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786909_2788001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788055_2788856_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788991_2789612_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789751_2790225_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791364_2792315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792311_2799973_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800213_2804260_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804572_2805154_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805150_2806449_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806528_2807557_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807817_2808768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808764_2809715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810031_2810637_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810690_2812004_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812078_2812549_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812548_2813337_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813347_2815000_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815087_2816038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817199_2817706_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817702_2818467_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818482_2818767_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818831_2819821_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819992_2820922_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820893_2821580_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821613_2822159_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822203_2823469_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823465_2824368_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825549_2826494_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826588_2828106_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828147_2829776_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829883_2830765_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833877_2834252_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834276_2834615_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834658_2836293_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836331_2837678_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837785_2839207_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839276_2839861_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839963_2840914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841048_2842155_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842165_2843263_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843407_2844613_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844619_2845141_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845137_2845620_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845625_2845877_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845857_2846343_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846478_2849940_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849957_2850842_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850851_2851283_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851529_2852033_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852110_2853511_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853585_2854461_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854457_2855465_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855932_2856238_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856328_2856919_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857109_2858126_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2861269	2928080	4109548	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2861269_2862220_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862318_2863269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863265_2864060_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864091_2864796_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864870_2865671_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865667_2866075_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866071_2866713_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866705_2868706_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869966_2871298_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871294_2872245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873951_2874218_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874925_2875264_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879817_2880420_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880516_2881806_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881863_2882595_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882591_2883395_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883391_2884480_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884476_2885406_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885554_2886700_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886721_2887672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2888002_2891824_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891980_2892649_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892653_2894327_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894345_2895665_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895669_2897985_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898040_2900209_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900205_2905386_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905484_2905799_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906026_2906272_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906366_2906885_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906984_2908190_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908305_2909703_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909819_2910398_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910470_2911862_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912029_2912980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913260_2913881_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913877_2914291_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914287_2915331_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915386_2915575_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915584_2916349_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916439_2917096_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917187_2917946_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917971_2919573_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919773_2920778_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920878_2921142_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921259_2922036_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922626_2923577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925960_2927073_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927129_2928080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	2958466	3002157	4109548	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2958466_2959417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959537_2960434_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962711_2964937_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965101_2966190_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966146_2966800_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966847_2967645_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968176_2969127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969207_2970356_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970412_2971363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971461_2971767_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971795_2972230_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972231_2973476_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973472_2974183_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974197_2975109_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975471_2975876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975872_2976331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976337_2977246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977242_2978109_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978095_2978923_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978933_2980061_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981138_2982377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982418_2983681_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983687_2984440_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984491_2984677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984952_2985417_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985448_2986108_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986252_2988361_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988357_2989308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989411_2990032_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990135_2990876_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992010_2993135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993180_2993549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993790_2994741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995776_2996319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996704_2997655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997651_2998560_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998686_2999523_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000035_3001145_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001206_3002157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	3384200	3437941	4109548	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384200_3385151_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385555_3386200_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386224_3386809_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386909_3387527_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387529_3389245_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389241_3389550_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389566_3390184_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390228_3390531_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390631_3391486_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391673_3391898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392067_3392340_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392757_3393165_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393534_3394329_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394429_3395665_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395733_3396750_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396761_3398138_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398134_3399331_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399327_3400866_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400862_3402122_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404062_3405013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405779_3406874_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406866_3408201_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408154_3408838_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408863_3410027_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410023_3411025_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411024_3411897_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411893_3412643_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412639_3413431_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413427_3414567_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414842_3415628_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415661_3416444_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416447_3416837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417976_3418840_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418875_3419964_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419960_3420911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421264_3424243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425169_3426048_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427996_3428947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428943_3429411_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429453_3430224_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430244_3431045_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431055_3432465_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432559_3433345_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433584_3434601_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434708_3435101_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435238_3435919_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435923_3436895_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436990_3437941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	3444096	3519284	4109548	tRNA,transposase	Acinetobacter_phage(25.0%)	60	NA	NA
WP_003820957.1|3444096_3445860_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445971_3446850_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446962_3447778_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447781_3448033_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448117_3449134_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449464_3449686_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452046_3452964_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453461_3454670_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454749_3456321_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456438_3457374_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457562_3458507_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459074_3464792_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464797_3465925_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465980_3466607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466878_3467895_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467990_3468701_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468697_3469687_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469782_3471414_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471416_3472154_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472309_3473182_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473531_3474671_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474667_3475327_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475398_3476031_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476060_3476579_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476589_3477699_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477745_3478600_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478601_3479504_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905441.1|3483432_3484422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484597_3485386_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485382_3486414_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486432_3486996_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487051_3488572_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488835_3489540_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489547_3490276_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490390_3490765_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490807_3492097_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492093_3493263_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493259_3494099_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494158_3495094_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495106_3496057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496155_3497118_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497149_3497509_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497633_3498536_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498537_3500310_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500344_3501121_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502444_3503395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3504246_3504567_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3504639_3505521_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3505637_3505880_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3506017_3506488_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3506500_3507040_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3507074_3508616_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3508714_3509620_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3509662_3511063_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3511072_3511495_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3511677_3512562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3512637_3513714_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3514020_3516123_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3516165_3518235_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3518333_3519284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011447	Bordetella pertussis strain B3913 chromosome, complete genome	4109548	3536402	3590203	4109548	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3536402_3537353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537693_3538644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538742_3539693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539989_3540487_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540529_3542305_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542312_3543179_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543185_3543920_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545089_3545884_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546173_3546764_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546797_3548126_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548200_3549346_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549457_3550456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550418_3550853_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552369_3553254_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553250_3554456_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554452_3555313_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555425_3557216_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557256_3557901_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557922_3558231_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558396_3559683_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561116_3562067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564018_3565233_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565338_3566328_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566324_3566933_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566945_3567575_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567571_3568192_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568223_3569015_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569866_3570322_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570340_3571267_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571320_3572607_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573537_3574410_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574406_3575357_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575455_3576406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3576510_3576741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3576867_3577257_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3577273_3579655_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3579647_3581024_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581039_3582035_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582053_3583046_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3583286_3583847_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3583851_3584178_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3584214_3585027_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585037_3586120_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586206_3587481_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3588203_3589154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3589252_3590203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
