The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	27282	70036	4103254	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	77634	136108	4103254	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	164893	225404	4103254	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	233336	286924	4103254	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	390857	448366	4103254	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	590420	651611	4103254	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	656935	703126	4103254	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	709292	763222	4103254	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	886860	954836	4103254	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907857_908064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938654_938870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	998370	1070887	4103254	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998370_999321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999425_1000475_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000612_1001629_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003137_1003710_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003769_1004501_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004552_1005470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006277_1009457_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009453_1010836_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010905_1011157_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011302_1011917_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012103_1014164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014293_1015145_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015141_1015768_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015764_1017519_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017811_1020517_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020529_1022191_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022203_1023994_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024215_1025391_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025433_1026384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026482_1027223_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027417_1029454_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029471_1030482_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030599_1031793_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031822_1032596_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032592_1033783_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033808_1034747_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034743_1037092_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037246_1037888_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039217_1039370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039401_1039950_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039968_1040454_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040631_1041570_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041572_1041890_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041935_1042880_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044560_1045211_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045264_1045600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045596_1046457_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046473_1046755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046828_1047092_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047335_1048286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048584_1049322_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049757_1050081_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050115_1050676_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050796_1051672_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051684_1052632_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052733_1053027_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053053_1055111_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055125_1055626_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055699_1057406_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058269_1059322_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059374_1059764_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059772_1060405_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060504_1061521_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062351_1063359_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063355_1064999_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064995_1065883_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066023_1066497_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066486_1067509_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067505_1068933_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069870_1070887_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1074640	1135667	4103254	tRNA,holin,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1074640_1075777_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075773_1076847_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077004_1078441_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078531_1079173_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079508_1080525_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083671_1085093_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085356_1086073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086157_1086475_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086515_1086929_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086930_1087290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087332_1088877_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088960_1089791_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089825_1090980_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091022_1091895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092011_1094300_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095506_1095971_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095997_1096948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096965_1097103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097315_1098092_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098136_1098994_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099015_1100032_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100166_1101207_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101401_1103483_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103718_1105212_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105442_1106237_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106457_1107816_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107812_1108655_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108673_1110560_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110501_1110753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110797_1111430_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111448_1112051_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112202_1113153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113733_1114441_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114799_1115786_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115925_1116939_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116935_1117886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117903_1118044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117998_1118457_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118493_1119807_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119824_1120196_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120192_1121656_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121796_1122525_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122506_1125356_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125568_1126519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126686_1127511_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127510_1128389_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129293_1130409_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130437_1131232_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131228_1133094_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133172_1133805_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133801_1134104_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134146_1135667_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1153237	1218820	4103254	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153237_1155034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155033_1156002_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156071_1156917_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156984_1157539_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157585_1158536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158634_1159267_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159430_1161713_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161867_1164564_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164689_1165178_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167588_1170459_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170504_1171719_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171948_1173376_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173473_1174565_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174577_1175336_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175423_1176326_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176322_1177273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177402_1178386_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178440_1179163_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180641_1181997_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182077_1184453_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184617_1186693_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186754_1187549_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187656_1188619_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188606_1189362_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189469_1191107_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191174_1191912_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192014_1192590_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192762_1193299_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193331_1193646_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193661_1194507_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194545_1195925_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196002_1196884_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196982_1197933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197929_1198340_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198447_1199302_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199294_1200257_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200302_1201427_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201532_1202411_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202535_1203315_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203468_1204890_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205324_1207022_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207248_1208190_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208516_1209263_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209270_1210197_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210318_1211236_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211275_1212229_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212253_1212832_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214505_1215114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215191_1215545_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215628_1216618_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216614_1216803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216820_1217771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217869_1218820_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1317956	1386443	4103254	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317956_1318907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319675_1320314_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321203_1321650_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321731_1322433_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322433_1323201_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323197_1324436_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324435_1325362_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325464_1326580_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326595_1327546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327899_1328481_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328477_1329311_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329521_1330835_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331011_1331893_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331912_1332764_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332816_1333905_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334015_1335143_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335377_1335989_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1336087_1337038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337259_1337637_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337784_1338282_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338278_1338806_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338939_1339755_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339767_1340949_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340996_1341890_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342016_1342487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342612_1343440_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343468_1344245_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344241_1344517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344531_1344996_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345007_1345709_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345818_1346319_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346401_1347580_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349207_1349543_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349730_1351179_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351236_1351581_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351687_1352227_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352319_1353270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353287_1353527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354008_1354440_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354621_1355026_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356262_1356586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356588_1357476_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357508_1357934_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358005_1358359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358598_1359105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359143_1360475_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360534_1361350_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361346_1362201_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365263_1367807_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369173_1370928_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370924_1373045_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373049_1375245_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375241_1378583_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381385_1382336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382401_1382581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382697_1383453_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383439_1384585_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385492_1386443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1446934	1502422	4103254	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446934_1447885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449086_1449533_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449525_1451001_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450997_1451753_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451745_1452756_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452745_1454422_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454734_1455067_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455080_1455476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455485_1455812_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455808_1456135_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456061_1457084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457080_1457431_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457478_1457907_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457914_1459288_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459428_1459806_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460068_1461376_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461436_1462267_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462263_1462752_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462793_1464314_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464357_1464834_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465637_1468235_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468264_1469086_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469812_1470562_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470745_1471624_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471721_1472438_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472452_1473013_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473179_1473944_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473963_1474821_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474817_1476017_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476056_1477391_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477443_1479780_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479905_1480469_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480477_1481569_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481640_1482096_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482096_1482891_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482887_1484069_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484055_1484661_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484657_1485431_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485442_1486270_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486431_1488795_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488862_1489582_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489705_1490131_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490165_1491116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491233_1492160_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492225_1493383_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493363_1493831_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493978_1494929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494945_1495380_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495369_1495720_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495916_1497071_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497067_1498240_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498287_1499181_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499226_1499664_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499723_1500413_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500422_1501373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501471_1502422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1597119	1665205	4103254	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1597119_1597608_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597725_1598304_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598409_1598778_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598876_1599827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599833_1600946_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601632_1602835_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1603038_1605699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1605711_1609116_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609783_1612009_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612055_1612382_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612432_1613041_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613139_1614090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614159_1614924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1614920_1615457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615623_1616475_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616534_1617161_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617157_1618108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618206_1619319_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619308_1620310_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620415_1621927_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621923_1623228_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623339_1623900_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624167_1624722_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625177_1625393_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625647_1628245_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628241_1629429_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1630087_1630702_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1630790_1631912_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631929_1632835_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633727_1634678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634859_1635612_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635680_1636340_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636336_1637065_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637077_1639357_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639381_1639585_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639626_1640259_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640394_1641312_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641308_1642022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642259_1643030_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643034_1643634_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643878_1645369_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645427_1645712_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1646277_1647204_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647340_1648081_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648247_1649624_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649805_1650711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652362_1654165_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1654282_1654933_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655031_1655982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1656003_1657224_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657409_1658822_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658885_1659953_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659952_1661440_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661449_1662394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662553_1663252_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663329_1664235_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664254_1665205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1701154	1756745	4103254	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701154_1702105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702163_1702937_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702929_1704486_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704482_1705433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706759_1707362_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707601_1708303_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708296_1709079_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709263_1710214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710312_1711050_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711239_1711998_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712044_1713034_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713211_1714180_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715719_1716688_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716696_1717638_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718111_1719122_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719112_1720627_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720623_1721970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1721972_1723007_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723056_1724682_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725234_1726185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726289_1727237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727290_1729105_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729097_1729772_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729901_1732976_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732989_1733289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733603_1734227_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1734470_1735340_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735317_1736262_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736347_1737274_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737386_1738166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738156_1739353_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739383_1740334_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740555_1741245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741309_1742065_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742116_1743109_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743118_1744072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744187_1745150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746551_1746980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746976_1747927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1748220_1748943_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749381_1750569_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1750572_1750923_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752672_1753644_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753657_1754371_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754375_1755293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755399_1755696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755794_1756745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	1989508	2059160	4103254	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1989508_1992166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992243_1993446_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993442_1993955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994077_1994515_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994791_1995742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995840_1996791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1996954_1998850_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1998963_1999131_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999194_1999431_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1999799_2000951_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002514_2003465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003916_2004918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005090_2005948_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005944_2007207_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007307_2007682_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2007754_2008942_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009026_2009797_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009910_2010675_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010625_2011927_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2011923_2012730_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2014474_2015446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015602_2016115_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016273_2017248_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018248_2019043_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019068_2019875_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019985_2020576_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020586_2021765_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021867_2022242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022494_2023826_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023892_2027123_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028613_2029360_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029444_2029906_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029943_2031002_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030964_2032794_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032833_2033406_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034830_2035652_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035970_2037293_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2037652_2038288_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2038247_2039198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2040068_2040941_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2041018_2042158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2042516_2043773_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043778_2044306_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2044310_2045129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2045128_2045851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045872_2046187_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2046204_2047353_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2047383_2048259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2048255_2049575_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2049647_2050844_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050854_2052342_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2054936_2055836_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055973_2056939_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2057037_2057988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2058209_2059160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2070656	2120052	4103254	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2070656_2071607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2072744_2073041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2073215_2074568_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2074710_2075727_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2077706_2078720_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2078806_2079712_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079868_2080213_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2080370_2080829_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080842_2083059_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2083055_2084117_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2084145_2085120_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2085071_2085890_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085902_2086511_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2086685_2087081_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2087099_2088539_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2088567_2088915_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088933_2089884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2090536_2091487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2091570_2093388_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2093461_2094109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2094121_2095051_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2095220_2095685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095932_2096613_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2096661_2098353_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2098368_2098920_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098916_2099288_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2099400_2100237_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2100247_2100772_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100869_2101049_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2101178_2102153_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2102283_2102640_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2102629_2103505_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2103603_2104488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2104509_2105805_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2106753_2107404_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2107491_2109012_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2109269_2111135_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2112180_2113131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2113148_2113289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2114103_2114463_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2114450_2115887_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115883_2116537_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2116533_2117727_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117830_2119105_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2119101_2120052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2131256	2199632	4103254	tRNA,protease,transposase	Klosneuvirus(22.22%)	58	NA	NA
WP_005013747.1|2131256_2132207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2132166_2132580_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2132864_2133164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2133573_2135856_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2136541_2138572_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2138591_2138804_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2139081_2139621_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2139734_2141030_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2141106_2142264_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2142447_2143347_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2143365_2144670_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2144635_2145742_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2145829_2146066_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2146204_2147275_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2147278_2148634_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2148660_2149818_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2149823_2150462_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2150463_2151759_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2151808_2153095_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2153110_2153617_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2153613_2154762_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2154789_2155215_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2155537_2158420_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2158512_2159268_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2160033_2161383_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2161481_2162432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2162530_2163481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2163554_2164028_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2164053_2165262_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2165258_2166032_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2166031_2166655_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2166820_2167081_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2167384_2167966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2168032_2168287_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2168273_2170898_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2170969_2171788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2171784_2172390_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2172427_2173561_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2175276_2175651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2175748_2177023_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2177026_2178604_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2179510_2180866_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2180862_2182497_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2182489_2183320_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2183337_2184282_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2184334_2185909_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2185956_2186316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2186308_2186629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2186744_2187677_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2187779_2188736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2188885_2190223_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2190227_2191484_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2191679_2192726_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2192783_2193152_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2193282_2194155_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2194231_2195134_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2196190_2197408_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2198681_2199632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2214910	2279731	4103254	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2214910_2215861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2216431_2216644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2216661_2217393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2217427_2218069_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2218061_2218730_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2220942_2221719_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2221740_2222898_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2222894_2223326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2223322_2224120_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2224139_2224541_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2224607_2225579_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2225644_2226868_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2227095_2228046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2228169_2230623_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2230811_2232116_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2232220_2232874_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2232876_2234187_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2234365_2234944_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2235055_2235256_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2235601_2236168_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2236251_2236455_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2236761_2237082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2237123_2237405_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2237479_2238736_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2239118_2239448_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2241018_2241840_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2241839_2242979_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2242985_2243882_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2243896_2245804_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2246163_2248776_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2248828_2251129_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2251125_2252334_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2252595_2252970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2252966_2253917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2254015_2256010_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2256069_2257035_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2257024_2259886_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2259888_2260395_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2260499_2261708_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2261709_2262648_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2262809_2263283_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2263279_2264230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2264340_2264781_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2264909_2266139_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2266177_2266999_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2267052_2268204_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2268295_2268784_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2271334_2273884_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2273954_2276528_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2276793_2276994_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2277025_2277187_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2277244_2277583_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2277731_2278682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2278780_2279731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2684922	2725591	4103254	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684922_2685873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685983_2686166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686265_2686862_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687045_2688137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688636_2689047_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689105_2689435_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689452_2691870_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691882_2692905_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692979_2693339_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693354_2693552_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693887_2694838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695032_2695482_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695478_2696429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696539_2697988_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698102_2698348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698487_2699438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699682_2700396_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700518_2700746_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701040_2701679_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701787_2702822_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702818_2703769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704184_2704709_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704712_2704982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705180_2706242_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706325_2707960_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707961_2708765_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708793_2709753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709756_2711271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711307_2712312_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712743_2713214_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713249_2713861_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713891_2714515_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714595_2716128_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716162_2717380_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717447_2718479_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718475_2719645_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719638_2720319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720480_2721323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721485_2722457_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722628_2723507_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723529_2724600_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724640_2725591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2781056	2853926	4103254	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781056_2781473_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781583_2782216_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782244_2782688_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782709_2783801_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783855_2784656_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784791_2785412_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785551_2786025_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787164_2788115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788111_2795773_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796013_2800060_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800372_2800954_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800950_2802249_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802328_2803357_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803617_2804568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804564_2805515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805831_2806437_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806490_2807804_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807878_2808349_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808348_2809137_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809147_2810800_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810887_2811838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812999_2813506_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813502_2814267_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814282_2814567_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814631_2815621_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815792_2816722_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816693_2817380_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817413_2817959_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818003_2819269_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819265_2820168_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821349_2822294_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822388_2823906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823947_2825576_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825683_2826565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829677_2830052_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830076_2830415_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830458_2832093_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832131_2833478_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833585_2835007_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835076_2835661_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835763_2836714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836848_2837955_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837965_2839063_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839207_2840413_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840419_2840941_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840937_2841420_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841425_2841677_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841657_2842143_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842278_2845740_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845757_2846642_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846651_2847083_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847329_2847833_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847910_2849311_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849385_2850261_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850257_2851265_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851732_2852038_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852128_2852719_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852909_2853926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2857069	2923881	4103254	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2857069_2858020_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858118_2859069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859065_2859860_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859891_2860596_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860670_2861471_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861467_2861875_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861871_2862513_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862505_2864506_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865766_2867098_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867094_2868045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869751_2870018_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870725_2871064_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875618_2876221_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876317_2877607_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877664_2878396_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878392_2879196_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879192_2880281_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880277_2881207_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881355_2882501_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882522_2883473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883490_2883649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2883803_2887625_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887781_2888450_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888454_2890128_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890146_2891466_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891470_2893786_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893841_2896010_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896006_2901187_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901285_2901600_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901827_2902073_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902167_2902686_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902785_2903991_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904106_2905504_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905620_2906199_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906271_2907663_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907830_2908781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909061_2909682_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909678_2910092_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910088_2911132_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911187_2911376_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911385_2912150_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912240_2912897_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912988_2913747_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913772_2915374_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915574_2916579_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916679_2916943_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917060_2917837_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918427_2919378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921761_2922874_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2922930_2923881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	2954267	2993456	4103254	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2954267_2955218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955235_2955385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955338_2956235_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958512_2960738_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960902_2961991_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961947_2962601_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962648_2963446_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963977_2964928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965008_2966157_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966213_2967164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967262_2967568_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967596_2968031_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968032_2969277_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969273_2969984_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969998_2970910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971272_2971677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971673_2972132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972138_2973047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973043_2973910_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973896_2974724_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974734_2975862_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976939_2978178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978219_2979482_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979488_2980241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980292_2980478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980753_2981218_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981249_2981909_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982053_2984162_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984158_2985109_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985212_2985833_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985936_2986677_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987811_2988936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988981_2989350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989591_2990542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991577_2992120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992317_2992488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2992505_2993456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	3377903	3431644	4103254	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3377903_3378854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379258_3379903_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379927_3380512_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380612_3381230_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381232_3382948_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382944_3383253_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383269_3383887_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383931_3384234_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384334_3385189_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385376_3385601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385770_3386043_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386460_3386868_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387237_3388032_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388132_3389368_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389436_3390453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390464_3391841_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391837_3393034_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393030_3394569_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394565_3395825_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397765_3398716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399482_3400577_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400569_3401904_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401857_3402541_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402566_3403730_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403726_3404728_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404727_3405600_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405596_3406346_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406342_3407134_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407130_3408270_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408545_3409331_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409364_3410147_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410150_3410540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411679_3412543_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412578_3413667_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413663_3414614_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414967_3417946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418872_3419751_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421699_3422650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422646_3423114_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423156_3423927_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423947_3424748_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424758_3426168_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426262_3427048_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427287_3428304_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428411_3428804_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428941_3429622_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429626_3430598_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430693_3431644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	3437799	3497099	4103254	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437799_3439563_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439674_3440553_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440665_3441481_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441484_3441736_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441820_3442837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443167_3443389_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445749_3446667_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447164_3448373_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448452_3450024_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450141_3451077_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451265_3452210_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452777_3458495_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458500_3459628_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459683_3460310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460581_3461598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461693_3462404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462400_3463390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463485_3465117_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465119_3465857_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466012_3466885_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467234_3468374_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468370_3469030_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469101_3469734_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469763_3470282_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470292_3471402_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471448_3472303_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472304_3473207_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474429_3475380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477136_3478126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478301_3479090_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479086_3480118_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480136_3480700_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480755_3482276_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482539_3483244_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483251_3483980_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484094_3484469_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484511_3485801_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485797_3486967_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486963_3487803_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487862_3488798_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488810_3489761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489859_3490822_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490853_3491213_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491337_3492240_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492241_3494014_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494048_3494825_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496148_3497099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011446	Bordetella pertussis strain B3658 chromosome, complete genome	4103254	3512037	3570110	4103254	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512037_3512988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513116_3514250_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514293_3515199_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515201_3516902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516898_3517819_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517826_3518804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518862_3519897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521871_3522108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522234_3523098_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523186_3524008_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524087_3524825_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524821_3525814_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525966_3526590_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526634_3527783_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530106_3531057_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531397_3532348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532446_3533397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533693_3534191_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534233_3536009_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536016_3536883_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536889_3537624_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538793_3539588_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539877_3540468_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540501_3541830_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541904_3543050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543161_3544160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544122_3544557_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546073_3546958_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546954_3548160_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548156_3549017_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549129_3550920_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550960_3551605_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551626_3551935_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552100_3553387_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554820_3555771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557722_3558937_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559042_3560032_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560028_3560637_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560649_3561279_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561275_3561896_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561927_3562719_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563570_3564026_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564044_3564971_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565024_3566311_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567241_3568114_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568110_3569061_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569159_3570110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
