The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	27282	70036	4110990	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023997043.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_054604407.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	77634	136108	4110990	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	164893	219510	4110990	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	225502	287973	4110990	transposase,protease,tRNA	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	391906	449415	4110990	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	590420	651611	4110990	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	656935	703126	4110990	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	709292	763222	4110990	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	885811	953787	4110990	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	997316	1069834	4110990	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1008400_1009783_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009852_1010104_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010249_1010864_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011050_1013111_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013240_1014092_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014088_1014715_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014711_1016466_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016758_1019464_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019476_1021138_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021150_1022941_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023162_1024338_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024380_1025331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025429_1026170_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026364_1028401_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028418_1029429_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029546_1030740_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030769_1031543_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031539_1032730_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032755_1033694_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033690_1036039_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036193_1036835_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038164_1038317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038348_1038897_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038915_1039401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039578_1040517_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040519_1040837_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040882_1041827_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043507_1044158_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044211_1044547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044543_1045404_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045420_1045702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045775_1046039_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046282_1047233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047531_1048269_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048704_1049028_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049062_1049623_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049743_1050619_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050631_1051579_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051680_1051974_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052000_1054058_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054072_1054573_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054646_1056353_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057216_1058269_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058321_1058711_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058719_1059352_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059451_1060468_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061298_1062306_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062302_1063946_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063942_1064830_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064970_1065444_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065433_1066456_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066452_1067880_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068817_1069834_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1073587	1135663	4110990	transposase,holin,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1073587_1074724_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074720_1075794_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075951_1077388_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077478_1078120_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078455_1079472_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081514_1082465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083667_1085089_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085352_1086069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086153_1086471_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086511_1086925_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086926_1087286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087328_1088873_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088956_1089787_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089821_1090976_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091018_1091891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092007_1094296_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095502_1095967_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095993_1096944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097311_1098088_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098132_1098990_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099011_1100028_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100162_1101203_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101397_1103479_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103714_1105208_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105438_1106233_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106453_1107812_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107808_1108651_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108669_1110556_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110497_1110749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110793_1111426_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111444_1112047_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112198_1113149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113729_1114437_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114795_1115782_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115921_1116935_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116931_1117882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117994_1118453_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118489_1119803_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119820_1120192_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120188_1121652_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121792_1122521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122502_1125352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125564_1126515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126682_1127507_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127506_1128385_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129289_1130405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130433_1131228_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131224_1133090_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133168_1133801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133797_1134100_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134142_1135663_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1289008	1354316	4110990	transposase,tRNA	Bacillus_virus(18.18%)	57	NA	NA
WP_003810552.1|1289008_1289743_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1289759_1291580_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1291650_1292376_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1292372_1292777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930272.1|1292928_1293558_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	27.1	6.6e-08
WP_010930273.1|1293610_1296325_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1296435_1297272_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1297326_1298115_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
WP_010930276.1|1298148_1299810_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_010930277.1|1299977_1301369_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1301506_1302166_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_023852880.1|1302201_1305027_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1308800_1310057_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1310169_1310496_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_010930279.1|1310788_1312750_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.5	4.2e-93
WP_010930280.1|1312749_1313358_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1313375_1315691_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1315693_1316908_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1316904_1317855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318623_1319262_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320151_1320598_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320679_1321381_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321381_1322149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322145_1323384_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323383_1324310_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324412_1325528_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325543_1326494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326847_1327429_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327425_1328259_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328469_1329783_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329959_1330841_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330860_1331712_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331764_1332853_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332963_1334091_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334325_1334937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335035_1335986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336207_1336585_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336732_1337230_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337226_1337754_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337887_1338703_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338715_1339897_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339944_1340838_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340964_1341435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341560_1342388_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342416_1343193_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343189_1343465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343479_1343944_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343955_1344657_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_076879566.1|1344868_1345819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811310.1|1345815_1346316_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346398_1347577_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349204_1349540_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349727_1351176_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351233_1351578_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351684_1352224_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352316_1353267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1353365_1354316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1382431	1448931	4110990	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1382431_1383382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383447_1383627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383743_1384499_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384485_1385631_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386538_1387489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1387676_1388879_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1388875_1389634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1390027_1390660_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1391615_1394216_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1394203_1397623_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1397630_1398536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1398674_1399253_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1399249_1400161_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1400174_1400855_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1401056_1403096_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1403114_1404101_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1404126_1404924_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1404920_1406114_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1406110_1407073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1407090_1408131_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1408118_1408727_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1410315_1411311_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1411330_1412509_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1412519_1413437_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1413492_1414443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1414541_1415312_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1415308_1415989_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1416055_1416844_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1417090_1418107_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1418412_1419567_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1424072_1424555_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1424572_1424863_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1424989_1425700_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1425883_1426291_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1426303_1426723_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1426770_1427475_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1427540_1428962_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1429000_1429765_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1429808_1430594_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1430593_1431283_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1431285_1432419_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1432436_1433459_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1433528_1435175_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1435208_1436741_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1436819_1438640_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1438760_1440380_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1440558_1442001_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1442217_1443234_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1443280_1444069_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1444091_1444361_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1444377_1445112_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1445180_1445522_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1445532_1446033_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1446025_1447036_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1447038_1447611_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1447980_1448931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1477102	1515692	4110990	transposase,protease	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1477102_1478437_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478489_1480826_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480951_1481515_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481523_1482615_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482686_1483142_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483142_1483937_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483933_1485115_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485101_1485707_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485703_1486477_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486488_1487316_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487477_1489841_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489908_1490628_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490751_1491177_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491211_1492162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492279_1493206_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493271_1494429_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494409_1494877_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_054604408.1|1495024_1495975_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495991_1496426_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496415_1496766_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496962_1498117_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498113_1499286_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499333_1500227_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500272_1500710_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500769_1501459_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502517_1503468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1503566_1504529_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1504755_1505910_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1505920_1509163_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1510184_1510829_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1510839_1511739_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1511786_1512872_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1512868_1514563_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1514741_1515692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1548504	1601922	4110990	transposase,tRNA	Planktothrix_phage(15.38%)	56	NA	NA
WP_005012067.1|1548504_1549455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1549481_1550255_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1550266_1551508_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1553289_1554240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1554271_1555369_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1555365_1556316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812612.1|1556737_1557130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248759.1|1557135_1557912_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812608.1|1558299_1560249_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_033446215.1|1560269_1560815_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_010930391.1|1560951_1561908_+	glutathione synthase	NA	NA	NA	NA	NA
WP_003812601.1|1561918_1562317_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003812598.1|1562432_1562702_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_010930392.1|1562823_1564518_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_010930393.1|1564682_1564907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930394.1|1565505_1566456_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930395.1|1566497_1567658_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930396.1|1567818_1568739_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_003812581.1|1568751_1569393_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930397.1|1569389_1570061_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812577.1|1570057_1570828_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_005012067.1|1570926_1571877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819820.1|1572093_1572498_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930398.1|1572571_1573762_-	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
WP_010930399.1|1573795_1574122_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_003809503.1|1574144_1574660_-	transporter	NA	NA	NA	NA	NA
WP_010930400.1|1574718_1575945_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
WP_010930401.1|1576122_1577253_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247931.1|1577487_1578069_+	molybdenum cofactor biosysynthesis protein	NA	NA	NA	NA	NA
WP_003809510.1|1578205_1579270_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_003819827.1|1579354_1579801_-	GFA family protein	NA	NA	NA	NA	NA
WP_003809513.1|1580025_1580907_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
WP_047122780.1|1580961_1581213_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_003809516.1|1581215_1581617_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_010930404.1|1581636_1581873_+	membrane protein	NA	NA	NA	NA	NA
WP_010930405.1|1581880_1582360_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_019247930.1|1582509_1583025_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.6	7.0e-16
WP_010930406.1|1583027_1584218_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_023853543.1|1584237_1585275_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	3.6e-35
WP_003809532.1|1585411_1586434_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
WP_003819839.1|1586525_1587362_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809536.1|1587554_1588460_+	arginase	NA	NA	NA	NA	NA
WP_010930408.1|1588486_1589278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930409.1|1589300_1589993_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930410.1|1590014_1590767_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
WP_010930411.1|1590895_1592455_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
WP_010930412.1|1592588_1593032_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930413.1|1593169_1594363_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003819848.1|1594442_1596137_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
WP_019247927.1|1596294_1597182_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
WP_010930415.1|1597219_1598152_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
WP_010930416.1|1598165_1598654_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598771_1599350_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599455_1599824_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930048.1|1599922_1600873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1600971_1601922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1615234	1668349	4110990	transposase	Rhodococcus_phage(12.5%)	47	NA	NA
WP_005013747.1|1615234_1616185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616254_1617019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617015_1617552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617718_1618570_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618629_1619256_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619252_1620203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620301_1621414_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621403_1622405_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622510_1624022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624018_1625323_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625434_1625995_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626262_1626817_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627272_1627488_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627742_1630340_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630336_1631524_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632182_1632797_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632885_1634007_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634024_1634930_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635822_1636773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636954_1637707_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637775_1638435_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638431_1639160_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639172_1641452_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641476_1641680_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641721_1642354_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642489_1643407_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643403_1644117_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644354_1645125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645129_1645729_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645973_1647464_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647522_1647807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648372_1649299_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649435_1650176_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650342_1651719_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651900_1652806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654457_1656260_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656377_1657028_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657126_1658077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1658175_1659126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1659147_1660368_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1660553_1661966_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1662029_1663097_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1663096_1664584_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1664593_1665538_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1665697_1666396_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1666473_1667379_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1667398_1668349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	1704298	1759889	4110990	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1704298_1705249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1705307_1706081_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1706073_1707630_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1707626_1708577_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1709903_1710506_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710745_1711447_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1711440_1712223_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1712407_1713358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1713456_1714194_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1714383_1715142_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1715188_1716178_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1716355_1717324_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718863_1719832_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719840_1720782_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1721255_1722266_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1722256_1723771_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723767_1725114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1725116_1726151_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1726200_1727826_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1728378_1729329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1729433_1730381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1730434_1732249_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1732241_1732916_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1733045_1736120_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1736133_1736433_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1736747_1737371_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1737614_1738484_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1738461_1739406_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1739491_1740418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1740530_1741310_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1741300_1742497_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1742527_1743478_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1743699_1744389_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1744453_1745209_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1745260_1746253_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1746262_1747216_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1747331_1748294_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749695_1750124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1750120_1751071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1751364_1752087_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752525_1753713_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1753716_1754067_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755816_1756788_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756801_1757515_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757519_1758437_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758543_1758840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1758938_1759889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2157491	2215154	4110990	transposase	Bacillus_virus(25.0%)	52	NA	NA
WP_005012067.1|2157491_2158442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|2158544_2159207_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|2159301_2159472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|2159824_2160826_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|2160828_2162025_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|2162045_2162849_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|2162929_2163226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|2163256_2163820_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|2163860_2164718_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|2164725_2165475_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|2165496_2166369_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|2166397_2167177_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|2167210_2168008_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|2170662_2171055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|2171048_2171909_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|2171912_2172875_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|2173651_2174341_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|2175201_2176152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|2176501_2177371_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|2177441_2178137_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|2178126_2178636_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|2178632_2179853_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|2179800_2180703_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931176.1|2182913_2184287_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|2184325_2185027_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|2185325_2186315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|2186415_2186877_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|2186892_2187441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|2187582_2189058_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|2189163_2190255_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|2190258_2191041_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|2191050_2191839_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|2192964_2193399_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|2193395_2194406_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|2194449_2195376_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|2195662_2196031_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|2196247_2197198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|2197242_2199669_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|2199717_2200410_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|2200482_2201682_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|2201699_2202605_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|2202720_2203650_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|2203675_2205022_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|2205034_2205799_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|2205812_2206595_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|2206787_2207738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|2207799_2208909_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|2209421_2210258_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|2210384_2211293_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2211289_2212240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2212625_2213168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2214203_2215154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2219636	2281815	4110990	transposase	Bacillus_virus(16.67%)	56	NA	NA
WP_023852714.1|2219636_2220587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|2220583_2222692_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|2222836_2223496_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|2223527_2223992_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|2224267_2224453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|2224504_2225257_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|2225263_2226526_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|2226567_2227806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|2228883_2230011_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|2230021_2230849_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|2230835_2231702_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|2233068_2233473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|2233835_2234747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|2234761_2235472_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|2235468_2236713_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|2236714_2237149_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|2237177_2237483_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|2237581_2238532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2238588_2239737_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|2239817_2240768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|2241299_2242097_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|2242144_2242798_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|2242754_2243843_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|2244007_2246233_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|2248510_2249407_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|2249527_2250478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931141.1|2250474_2252166_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_010931140.1|2252227_2253424_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003814552.1|2253437_2254316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929220.1|2254422_2255469_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814554.1|2255532_2255943_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814555.1|2255953_2257426_+	magnesium transporter	NA	NA	NA	NA	NA
WP_010931139.1|2258568_2259720_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003813114.1|2259867_2260878_-	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931138.1|2261048_2262014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_033446289.1|2262188_2263019_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813109.1|2263105_2263372_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_003820295.1|2263376_2264288_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_010931136.1|2264337_2266200_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003813103.1|2266356_2267154_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010926331.1|2267373_2267754_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813095.1|2267801_2268125_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_003813094.1|2268217_2268490_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_010931135.1|2268505_2268961_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813091.1|2269077_2269914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813089.1|2269910_2271284_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_010931134.1|2271304_2272273_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813085.1|2272352_2273330_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_023853657.1|2273434_2275114_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813079.1|2275193_2275658_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813077.1|2275660_2276113_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931132.1|2276329_2277517_+	alanine transaminase	NA	NA	NA	NA	NA
WP_003813074.1|2277513_2278818_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931131.1|2278814_2280221_+	threonine synthase	NA	NA	NA	NA	NA
WP_003813070.1|2280434_2280656_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_005012808.1|2280864_2281815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2285367	2351835	4110990	transposase,protease	uncultured_Mediterranean_phage(25.0%)	50	NA	NA
WP_005012067.1|2285367_2286318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|2286908_2287685_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|2287802_2288066_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|2288166_2289171_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|2289371_2290973_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|2290998_2291757_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|2291848_2292505_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|2292595_2293360_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|2293369_2293558_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|2293613_2294657_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|2294653_2295067_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|2295063_2295684_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|2295964_2296915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|2297082_2298474_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|2298546_2299125_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|2299241_2300639_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|2300754_2301960_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|2302059_2302578_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|2302672_2302918_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|2303145_2303460_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|2303558_2308739_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|2308735_2310904_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|2310959_2313275_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|2313279_2314599_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|2314617_2316291_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|2316295_2316964_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|2317120_2320942_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|2321272_2322223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|2322244_2323390_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2323538_2324468_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|2324464_2325553_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|2325549_2326353_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|2326349_2327081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|2327138_2328428_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|2328524_2329127_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|2333680_2334019_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|2334726_2334993_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|2336699_2337650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|2337646_2338978_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|2340238_2342239_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|2342231_2342873_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|2342869_2343277_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|2343273_2344074_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|2344148_2344853_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|2344884_2345679_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|2345675_2346626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2346724_2347675_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|2347773_2348208_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|2348290_2350627_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010929632.1|2350818_2351835_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2399229	2480104	4110990	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|2399229_2400180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2400176_2401127_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|2401387_2402416_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|2402495_2403794_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|2403790_2404372_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|2404684_2408731_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|2408971_2416633_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|2416629_2417580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|2418719_2419193_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|2419332_2419953_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|2420088_2420889_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|2420943_2422035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|2422056_2422500_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|2422528_2423161_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|2423271_2423688_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|2423680_2424373_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|2424479_2424854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|2424930_2425740_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|2425835_2426780_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|2426818_2427790_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|2427880_2428318_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|2428376_2429258_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|2430261_2431122_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|2431154_2432537_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|2432533_2433553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|2433925_2434420_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|2434427_2435168_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|2435248_2436853_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|2436892_2437681_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|2437806_2439972_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|2440852_2441665_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|2441677_2441986_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|2442103_2443834_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|2443835_2445038_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|2445110_2445779_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|2445900_2446368_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|2446503_2447886_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|2447882_2449007_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|2449003_2451640_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|2452055_2453006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|2456752_2457364_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|2457586_2459047_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|2459143_2460736_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|2461089_2461347_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2461348_2462689_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|2462784_2463474_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2463486_2464917_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|2466641_2467463_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|2467473_2469045_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|2469073_2470051_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|2470077_2470881_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|2470877_2471672_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|2471679_2472915_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|2472928_2473342_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|2473697_2473970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2474091_2475042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|2475663_2477391_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|2477502_2478861_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|2479153_2480104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2564760	2621166	4110990	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010930208.1|2564760_2565711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|2565713_2566667_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|2566694_2567546_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|2567551_2568580_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|2568576_2569620_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|2569687_2570713_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|2570994_2572248_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|2572258_2572531_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|2572527_2575467_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|2575474_2576074_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|2576074_2576923_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|2576960_2577947_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|2577962_2579399_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|2579411_2580203_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|2580521_2581577_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|2581613_2582423_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|2582423_2582972_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|2583122_2583542_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|2583616_2585278_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|2585293_2586193_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|2586307_2587312_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|2587369_2588458_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|2588539_2588782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|2588923_2589478_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|2589485_2589866_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|2589956_2591882_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|2591982_2593116_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|2593284_2596035_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|2596367_2596742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|2596779_2597322_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|2597325_2598498_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|2598519_2599407_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|2599499_2600450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2600548_2601499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|2601665_2602019_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|2602031_2602394_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|2602435_2602861_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|2603063_2604320_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|2604518_2605499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|2605648_2606890_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2606988_2607939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|2607947_2608643_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|2611464_2612064_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|2612074_2614240_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|2614263_2616048_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|2616047_2616137_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|2616831_2617104_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|2617103_2619170_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|2619166_2620117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2620215_2621166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2889830	2930160	4110990	transposase,tRNA	Moraxella_phage(18.18%)	36	NA	NA
WP_005012067.1|2889830_2890781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820087.1|2890899_2891250_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|2891246_2892704_-	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_010930805.1|2893358_2896070_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|2896328_2896601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|2896597_2897548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2897646_2900247_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2900353_2901358_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2901466_2902807_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2902847_2903876_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2904071_2904617_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2904613_2905174_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2905272_2906223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2906260_2906848_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2906865_2907249_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2908608_2909901_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2910035_2911076_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010931363.1|2911173_2912190_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|2912457_2913093_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2913230_2913989_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2913973_2914753_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2914770_2915655_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2915651_2916431_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2916457_2917135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2917423_2918176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2918294_2919695_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2919718_2920117_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2920292_2920493_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2920631_2921360_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2921493_2922909_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2922912_2923776_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2923788_2924538_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|2924780_2926736_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|2926717_2927386_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2928160_2929111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2929209_2930160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	2943661	3009209	4110990	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_005012808.1|2943661_2944612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2944608_2945082_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2945243_2946182_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2946183_2947392_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2947496_2948003_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2948005_2950867_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2950856_2951822_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2951881_2953876_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2953974_2954925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|2954921_2955296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|2955557_2956766_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|2956762_2959063_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|2959115_2961728_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033446179.1|2962087_2963995_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|2964009_2964906_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2964912_2966052_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|2966051_2966873_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|2968442_2968772_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|2969154_2970411_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|2970485_2970767_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|2970808_2971129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|2971435_2971639_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|2971722_2972289_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|2972634_2972835_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|2972946_2973525_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|2973703_2975014_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|2975016_2975670_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|2975774_2977079_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|2977267_2979721_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|2979844_2980795_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|2981022_2982246_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|2982311_2983283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|2983349_2983751_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|2983770_2984568_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|2984564_2984996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|2984992_2986150_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|2986171_2986948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|2989160_2989829_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|2989821_2990463_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|2990497_2991229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|2991246_2991459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992029_2992980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|2994537_2995188_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|2995316_2996519_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|2996596_2998633_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|2998885_2999377_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|2999592_3000105_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|3000122_3001334_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|3001371_3001782_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|3001783_3002107_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|3002109_3002622_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|3002751_3004614_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|3004623_3004965_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|3004964_3005159_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|3005283_3006177_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|3006173_3007124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|3007248_3008058_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|3008258_3009209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3036992	3077683	4110990	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|3036992_3039617_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|3039603_3039858_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|3039924_3040506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|3040809_3041070_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|3041235_3041859_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|3041858_3042632_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|3042628_3043837_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|3043862_3044336_-	RidA family protein	NA	NA	NA	NA	NA
WP_041337087.1|3044409_3045360_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|3045458_3046409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|3046507_3047857_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|3048622_3049378_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|3049470_3052353_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|3052675_3053101_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|3053128_3054277_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|3054273_3054780_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|3054795_3056082_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|3056131_3057427_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|3057428_3058067_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|3058072_3059230_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|3059256_3060612_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|3060615_3061686_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|3061824_3062061_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|3062148_3063255_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|3063220_3064525_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|3064543_3065443_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|3065626_3066784_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|3066860_3068156_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|3068269_3068809_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|3069086_3069299_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|3069318_3071349_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|3071374_3071569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|3072034_3074317_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|3074726_3075026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|3075310_3075724_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|3075683_3076634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3076732_3077683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3088887	3219431	4110990	transposase,tRNA	uncultured_Caudovirales_phage(16.67%)	113	NA	NA
WP_005012067.1|3088887_3089838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|3089834_3091109_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|3091212_3092406_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|3092402_3093056_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|3093052_3094489_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|3094476_3094836_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|3095650_3095791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|3096755_3098621_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|3098878_3100399_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|3100486_3101137_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|3102085_3103381_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|3103402_3104287_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|3104385_3105261_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|3105250_3105607_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|3105737_3106712_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|3106841_3107021_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|3107118_3107643_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|3107653_3108490_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|3108602_3108974_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|3108970_3109522_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|3109537_3111229_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|3111277_3111958_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|3112205_3112670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|3112839_3113769_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|3113781_3114429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|3114502_3116320_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|3116403_3117354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|3118006_3118957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|3118975_3119323_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|3119351_3120791_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|3120809_3121205_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|3121379_3121988_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|3122000_3122819_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|3122770_3123745_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|3123773_3124835_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|3124831_3127048_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|3127061_3127520_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|3127677_3128022_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|3128178_3129084_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|3129170_3130184_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|3132163_3133180_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|3133322_3134675_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|3134849_3135146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3136283_3137234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|3137719_3137896_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|3138580_3139552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|3139555_3140410_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|3140428_3141250_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|3141281_3142076_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|3142124_3142730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|3142687_3143521_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|3143806_3145312_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|3145353_3146136_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|3146205_3146652_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|3146648_3147875_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|3147867_3148272_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|3148431_3148734_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|3148730_3149681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|3149902_3150853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3150951_3151902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|3152000_3152966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|3153103_3154003_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|3156597_3158085_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|3158095_3159292_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|3159364_3160684_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|3160680_3161556_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|3161586_3162735_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|3162752_3163067_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|3163088_3163811_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|3163810_3164629_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|3164633_3165161_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|3165166_3166423_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|3166781_3167921_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|3167998_3168871_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|3169741_3170692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|3170651_3171287_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|3171646_3172969_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|3173287_3174109_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|3175533_3176106_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|3176145_3177975_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|3177937_3178996_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|3179033_3179495_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|3179579_3180326_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|3181816_3185047_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|3185113_3186445_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|3186697_3187072_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|3187174_3188353_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|3188363_3188954_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|3189064_3189871_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|3189896_3190691_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|3191691_3192666_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|3192824_3193337_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|3193493_3194465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|3196209_3197016_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|3197012_3198314_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|3198264_3199029_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|3199142_3199913_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|3199997_3201185_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|3201257_3201632_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|3201732_3202995_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|3202991_3203849_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|3204021_3205023_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3205474_3206425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|3207988_3209140_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|3209508_3209745_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|3209808_3209976_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|3210089_3211985_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|3212148_3213099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|3213197_3214148_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247822.1|3214424_3214862_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_003810260.1|3214984_3215497_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930709.1|3215493_3216696_+	MFS transporter	NA	NA	NA	NA	NA
WP_003818515.1|3216773_3219431_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
>prophage 28
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3238156	3286823	4110990	transposase,holin,protease,tRNA	Erwinia_phage(10.0%)	47	NA	NA
WP_005012808.1|3238156_3239107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3239551_3239863_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3239862_3240393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3240555_3241506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3241604_3242555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3242844_3243309_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3243323_3244829_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3245082_3246690_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3246745_3247651_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3248091_3249042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3249140_3250091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3250172_3250754_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3251178_3251484_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3251497_3252832_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3252853_3253393_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807164.1|3253540_3254005_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931290.1|3254147_3255263_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807166.1|3255539_3256043_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_019248127.1|3256216_3256381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931288.1|3256371_3257094_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_010931287.1|3257090_3257987_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931286.1|3257983_3258919_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247300.1|3258879_3259548_+	DUF1007 family protein	NA	NA	NA	NA	NA
WP_003818434.1|3259538_3260507_+	putative membrane protein	NA	NA	NA	NA	NA
WP_010931283.1|3260555_3262697_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931282.1|3262709_3263690_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931281.1|3263704_3264397_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_003807183.1|3264423_3265335_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931280.1|3265377_3266268_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931279.1|3266264_3267119_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010925730.1|3267402_3268566_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_003818441.1|3268676_3268928_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_003807194.1|3269007_3270048_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_010931278.1|3270327_3271746_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_010931277.1|3271816_3272152_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3272151_3272994_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3273092_3274043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3274107_3275079_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3275142_3276162_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3276163_3277537_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3277814_3278495_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3278570_3280634_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3280630_3281725_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3281739_3282999_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3283018_3284707_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3284981_3285734_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3285872_3286823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3296750	3336700	4110990	transposase,integrase,protease,tRNA	Mycobacterium_phage(50.0%)	26	3319547:3319565	3339435:3339453
WP_005012067.1|3296750_3297701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3298228_3299002_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3299134_3300145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3300296_3301952_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3302006_3302348_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3302361_3303801_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3303933_3304749_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3304942_3305893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3307280_3308228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3308454_3309195_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3309280_3310231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3311672_3313244_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3313576_3315430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3315474_3318039_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318457_3319408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3319547:3319565	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3322273_3322768_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3322784_3323735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3323721_3323922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3323918_3325130_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3325145_3328097_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3328098_3330855_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3331365_3332412_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3332753_3333881_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3334160_3335252_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3335324_3336107_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3336103_3336700_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3339435:3339453	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 30
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3385638	3439379	4110990	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385638_3386589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386993_3387638_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387662_3388247_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3388347_3388965_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388967_3390683_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390679_3390988_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3391004_3391622_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391666_3391969_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3392069_3392924_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3393111_3393336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393505_3393778_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3394195_3394603_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394972_3395767_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395867_3397103_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3397171_3398188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3398199_3399576_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399572_3400769_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400765_3402304_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3402300_3403560_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405500_3406451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3407217_3408312_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3408304_3409639_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409592_3410276_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3410301_3411465_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3411461_3412463_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412462_3413335_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3413331_3414081_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3414077_3414869_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414865_3416005_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3416280_3417066_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3417099_3417882_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417885_3418275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419414_3420278_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3420313_3421402_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3421398_3422349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422702_3425681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426607_3427486_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010931070.1|3429434_3430385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3430381_3430849_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430891_3431662_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431682_3432483_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432493_3433903_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433997_3434783_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435022_3436039_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436146_3436539_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436676_3437357_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3437361_3438333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438428_3439379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3445534	3504834	4110990	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3445534_3447298_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447409_3448288_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448400_3449216_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449219_3449471_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449555_3450572_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450902_3451124_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453484_3454402_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454899_3456108_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456187_3457759_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457876_3458812_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459000_3459945_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460512_3466230_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466235_3467363_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467418_3468045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3468316_3469333_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469428_3470139_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470135_3471125_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471220_3472852_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472854_3473592_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473747_3474620_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474969_3476109_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476105_3476765_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476836_3477469_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477498_3478017_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478027_3479137_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479183_3480038_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480039_3480942_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482164_3483115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484871_3485861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3486036_3486825_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486821_3487853_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487871_3488435_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488490_3490011_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490274_3490979_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490986_3491715_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491829_3492204_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492246_3493536_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493532_3494702_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494698_3495538_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495597_3496533_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496545_3497496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497594_3498557_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498588_3498948_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499072_3499975_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499976_3501749_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501783_3502560_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503883_3504834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	3519772	3591642	4110990	transposase,tRNA	Planktothrix_phage(10.0%)	60	NA	NA
WP_005012808.1|3519772_3520723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520851_3521985_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522028_3522934_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522936_3524637_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524633_3525554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525561_3526539_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526597_3527632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529606_3529843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529969_3530833_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530921_3531743_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531822_3532560_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532556_3533549_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533701_3534325_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3534369_3535518_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537841_3538792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539132_3540083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540181_3541132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541428_3541926_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541968_3543744_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543751_3544618_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544624_3545359_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546528_3547323_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547612_3548203_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548236_3549565_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549639_3550785_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550896_3551895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551857_3552292_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553808_3554693_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554689_3555895_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555891_3556752_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556864_3558655_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558695_3559340_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3559361_3559670_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559835_3561122_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562555_3563506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565457_3566672_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566777_3567767_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567763_3568372_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3568384_3569014_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569010_3569631_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569662_3570454_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571305_3571761_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571779_3572706_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572759_3574046_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574976_3575849_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575845_3576796_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576894_3577845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3577949_3578180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3578306_3578696_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3578712_3581094_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3581086_3582463_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3582478_3583474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3583492_3584485_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3584725_3585286_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3585290_3585617_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3585653_3586466_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3586476_3587559_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3587645_3588920_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3589642_3590593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3590691_3591642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP011445	Bordetella pertussis strain B3640 chromosome, complete genome	4110990	4010058	4074970	4110990	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4010058_4010544_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010632_4010770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010762_4011743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4012009_4012819_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012858_4013539_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013532_4013991_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4014002_4014365_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014447_4015131_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4015186_4015495_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015513_4015828_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015824_4018299_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4018306_4019698_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019694_4019880_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019858_4020560_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020556_4021378_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4021358_4022483_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022475_4023495_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023700_4024591_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024835_4025627_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025709_4026084_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4026061_4027471_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027463_4028846_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4029180_4030785_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030862_4031834_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031844_4032771_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4033161_4034112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034281_4035508_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035707_4036574_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036566_4037529_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037629_4038580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038678_4039629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039727_4040678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040674_4042168_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042164_4045272_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045268_4048337_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048333_4049584_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049764_4050517_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050558_4051203_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4051211_4052192_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052291_4053035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4053117_4053465_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053562_4054405_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054449_4055337_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4055363_4055552_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055649_4057107_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057093_4058620_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058638_4059106_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4059105_4060128_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4060248_4060989_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4061043_4062144_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062145_4063336_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063455_4064472_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064790_4065462_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065458_4066367_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066578_4067226_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4071086_4072154_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072164_4072974_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073063_4073837_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4074019_4074970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
