The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	27282	70036	4106388	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	77634	136108	4106388	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	164894	225405	4106388	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	233337	286925	4106388	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_010929591.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	390858	448367	4106388	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	590421	651613	4106388	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591847_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593756_594248_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594266_595340_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595386_596490_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596565_597186_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597206_597716_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597770_598022_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598085_599219_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599226_599613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599609_602129_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602557_602896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602892_603399_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603460_604261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604371_605313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605406_606942_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608621_610472_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610475_611309_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611308_612250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612501_613473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613614_615903_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616209_617118_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617172_618138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618212_619874_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619945_620656_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620622_620787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620804_621755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622453_622837_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622894_623497_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623514_623916_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624031_624943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624939_625521_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626315_627050_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627090_628140_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628287_628866_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629252_630230_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630323_634718_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634918_635767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635925_636738_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636793_637744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637842_638643_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638704_639088_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639099_640452_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640739_641069_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641071_641821_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642003_642924_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642970_643183_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643205_643628_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643644_644745_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644841_646359_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646434_647274_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647295_648168_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648258_649353_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649646_650597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650671_651613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	656937	703128	4106388	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656937_657963_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658003_658243_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658312_659902_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659901_660450_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660530_661103_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661121_662033_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662106_663075_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663197_664271_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664275_666096_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666172_667123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667211_667547_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667680_668331_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668352_669771_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669840_670596_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670564_671323_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671333_672215_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672231_672939_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672941_673700_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673909_675652_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675644_676169_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676208_677003_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677170_678244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678342_679293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679544_679751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679822_680434_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680988_681240_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681232_681922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681939_682161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682178_683129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683768_684254_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684240_685518_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685520_686939_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686967_688023_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688028_688271_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688393_688996_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689424_690375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691049_691301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691363_691846_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691859_692048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692047_692443_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692439_692838_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692834_693257_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693264_693765_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694019_694538_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694547_694877_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694894_695185_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695210_697823_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697832_698192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698259_698793_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698789_699179_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699171_703128_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	709294	763224	4106388	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709294_711025_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711077_711506_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711508_712189_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712188_712647_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712683_713658_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713674_714991_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715022_715520_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715606_716296_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716295_717345_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717341_718136_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718304_718655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718630_719188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720317_721268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723405_724635_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724637_726080_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726184_727330_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727361_728159_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728183_729743_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729739_732112_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732221_733325_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733324_734017_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734160_734862_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734846_735224_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735955_736906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737065_737938_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738278_738497_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738536_739916_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739957_741355_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741394_743047_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743050_743935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743934_744876_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744954_746574_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746740_747556_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747623_748193_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748193_749144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749798_750896_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750929_752195_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752352_753303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753546_754137_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754152_756597_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756716_757688_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757819_758344_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758303_759254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759475_761671_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761743_762151_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762273_763224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	886862	954838	4106388	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886862_887879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888075_889059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890657_892046_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892076_893066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893176_894409_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894690_895491_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895513_897745_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898532_898979_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899000_899747_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899890_900868_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901501_902113_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902106_903324_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903464_904415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904411_905131_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905251_907411_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907501_907771_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907859_908066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908064_908592_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908610_909390_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909557_910574_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910646_911138_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911148_912864_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914027_914978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914974_916807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917205_917865_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918392_919073_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919354_920071_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920085_921387_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923531_926420_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926643_927996_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928024_928546_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928542_929997_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930031_930280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930385_931261_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931286_932342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932354_933146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933178_934549_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935725_936676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936728_936950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937109_937322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937441_938560_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938656_938872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939065_939317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939429_940380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940376_940760_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940814_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942778_943606_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943651_944632_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944628_944841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944837_946019_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946182_946917_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946918_949531_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949666_951580_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952195_952606_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952703_953789_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953887_954838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	998367	1070884	4106388	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009450_1010833_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011299_1011914_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012100_1014161_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015138_1015765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015761_1017516_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024212_1025388_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025430_1026381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026479_1027220_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027414_1029451_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029468_1030479_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030596_1031790_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031819_1032593_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032589_1033780_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033805_1034744_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034740_1037089_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037243_1037885_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039214_1039367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039398_1039947_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039965_1040451_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040628_1041567_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041569_1041887_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041932_1042877_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044557_1045208_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045261_1045597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045593_1046454_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046470_1046752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046825_1047089_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047332_1048283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048581_1049319_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049754_1050078_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050112_1050673_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050793_1051669_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051681_1052629_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052730_1053024_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053050_1055108_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055122_1055623_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055696_1057403_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058266_1059319_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059371_1059761_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059769_1060402_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060501_1061518_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062348_1063356_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063352_1064996_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064992_1065880_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066020_1066494_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066483_1067506_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067502_1068930_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069867_1070884_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1074637	1135649	4106388	transposase,holin,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1074637_1075774_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075770_1076844_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077001_1078438_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078528_1079170_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079505_1080522_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_050837992.1|1080854_1083587_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083653_1085075_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085338_1086055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086139_1086457_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086497_1086911_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086912_1087272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087314_1088859_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088942_1089773_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089807_1090962_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091004_1091877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091993_1094282_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095488_1095953_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095979_1096930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096947_1097085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097297_1098074_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098118_1098976_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098997_1100014_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100148_1101189_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101383_1103465_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103700_1105194_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105424_1106219_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106439_1107798_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107794_1108637_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108655_1110542_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110483_1110735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110779_1111412_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111430_1112033_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112184_1113135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113715_1114423_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114781_1115768_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115907_1116921_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116917_1117868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117885_1118026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117980_1118439_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118475_1119789_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119806_1120178_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120174_1121638_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121778_1122507_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122488_1125338_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125550_1126501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126668_1127493_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127492_1128371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129275_1130391_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130419_1131214_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131210_1133076_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133154_1133787_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133783_1134086_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134128_1135649_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1153219	1218803	4106388	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153219_1155016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155015_1155984_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156053_1156899_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156966_1157521_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157567_1158518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158616_1159249_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159413_1161696_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161850_1164547_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164672_1165161_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167571_1170442_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170487_1171702_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171931_1173359_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173456_1174548_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174560_1175319_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175406_1176309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176305_1177256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177385_1178369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178423_1179146_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180624_1181980_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182060_1184436_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184600_1186676_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186737_1187532_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187639_1188602_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188589_1189345_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189452_1191090_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191157_1191895_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191997_1192573_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192745_1193282_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193314_1193629_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193644_1194490_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194528_1195908_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195985_1196867_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196965_1197916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197912_1198323_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198430_1199285_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199277_1200240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200285_1201410_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201515_1202394_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202518_1203298_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203451_1204873_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205307_1207005_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207231_1208173_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208499_1209246_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209253_1210180_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210301_1211219_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211258_1212212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212236_1212815_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214488_1215097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215174_1215528_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215611_1216601_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216597_1216786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216803_1217754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1317939	1386426	4106388	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317939_1318890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319658_1320297_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321186_1321633_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321714_1322416_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322416_1323184_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323180_1324419_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324418_1325345_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325447_1326563_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326578_1327529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327882_1328464_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328460_1329294_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329504_1330818_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1330994_1331876_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331895_1332747_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332799_1333888_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1333998_1335126_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335360_1335972_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336070_1337021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337242_1337620_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337767_1338265_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338261_1338789_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338922_1339738_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339750_1340932_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340979_1341873_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1341999_1342470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342595_1343423_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343451_1344228_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344224_1344500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344514_1344979_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1344990_1345692_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345801_1346302_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346384_1347563_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349190_1349526_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349713_1351162_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351219_1351564_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351670_1352210_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352302_1353253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1353270_1353510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1353991_1354423_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354604_1355009_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356245_1356569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356571_1357459_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357491_1357917_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1357988_1358342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358581_1359088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359126_1360458_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360517_1361333_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361329_1362184_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365246_1367790_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369156_1370911_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370907_1373028_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373032_1375228_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375224_1378566_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381368_1382319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382384_1382564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382680_1383436_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383422_1384568_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385475_1386426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1446917	1502405	4106388	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_010929591.1|1446917_1447868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449069_1449516_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449508_1450984_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450980_1451736_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451728_1452739_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452728_1454405_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454717_1455050_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455063_1455459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455468_1455795_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455791_1456118_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456044_1457067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457063_1457414_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457461_1457890_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457897_1459271_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459411_1459789_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460051_1461359_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461419_1462250_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462246_1462735_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462776_1464297_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464340_1464817_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465620_1468218_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468247_1469069_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469795_1470545_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470728_1471607_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471704_1472421_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472435_1472996_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473162_1473927_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473946_1474804_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474800_1476000_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476039_1477374_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477426_1479763_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479888_1480452_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480460_1481552_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481623_1482079_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482079_1482874_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482870_1484052_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484038_1484644_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484640_1485414_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485425_1486253_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486414_1488778_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488845_1489565_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489688_1490114_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490148_1491099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491216_1492143_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492208_1493366_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493346_1493814_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493961_1494912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494928_1495363_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495352_1495703_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495899_1497054_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497050_1498223_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498270_1499164_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499209_1499647_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499706_1500396_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500405_1501356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501454_1502405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1872415	1965402	4106388	transposase	Bacillus_virus(30.0%)	86	NA	NA
WP_005012067.1|1872415_1873366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1873468_1874131_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1874225_1874396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1874748_1875750_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1875752_1876949_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1876969_1877773_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1877853_1878150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1878180_1878744_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1878784_1879642_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1879649_1880399_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1880420_1881293_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1881321_1882101_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1882134_1882932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1885586_1885979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1885972_1886833_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1886836_1887799_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1888575_1889265_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1890125_1891076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1891425_1892295_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1892365_1893061_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1893050_1893560_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1893556_1894777_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1894724_1895627_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1896513_1897800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1897838_1899212_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1899250_1899952_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1900250_1901240_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1901340_1901802_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1901817_1902366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1902507_1903983_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1904088_1905180_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1905183_1905966_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1905975_1906764_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1907889_1908324_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1908320_1909331_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1909374_1910301_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1910587_1910956_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1911008_1911155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1911172_1912123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1912167_1914594_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1914642_1915335_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1915407_1916607_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1916624_1917530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1917645_1918575_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1918600_1919947_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1919959_1920724_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1920737_1921520_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1921712_1922663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1922724_1923834_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1924346_1925183_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1925309_1926218_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1926214_1927165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1927182_1927353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1927550_1928093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1929128_1930079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1930320_1930689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1930734_1931859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1932993_1933734_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1933837_1934458_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1934561_1935512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1935508_1937617_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1937761_1938421_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1938452_1938917_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1939192_1939378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1939429_1940182_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1940188_1941451_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1941492_1942731_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1943807_1944935_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1944945_1945773_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1945759_1946626_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1947992_1948397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1948759_1949671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1949685_1950396_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1950392_1951637_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1951638_1952073_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1952101_1952407_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1952505_1953456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1953512_1954661_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1954741_1955692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1956223_1957021_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1957068_1957722_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1957678_1958767_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1958931_1961157_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1963434_1964331_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1964284_1964434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1964451_1965402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	1995788	2067808	4106388	transposase,protease	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_005012808.1|1995788_1996739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1996795_1997908_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|2000291_2001242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|2001832_2002609_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|2002726_2002990_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|2003090_2004095_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|2004295_2005897_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|2005922_2006681_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|2006772_2007429_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|2007519_2008284_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|2008293_2008482_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|2008537_2009581_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|2009577_2009991_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|2009987_2010608_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|2010888_2011839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|2012006_2013398_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|2013470_2014049_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|2014165_2015563_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|2015678_2016884_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|2016983_2017502_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|2017596_2017842_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|2018069_2018384_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|2018482_2023663_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|2023659_2025828_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|2025883_2028199_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|2028203_2029523_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|2029541_2031215_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|2031219_2031888_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|2032044_2035866_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|2036020_2036179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|2036196_2037147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|2037168_2038314_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2038462_2039392_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|2039388_2040477_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|2040473_2041277_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|2041273_2042005_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|2042062_2043352_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|2043448_2044051_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|2048604_2048943_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|2049650_2049917_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|2051623_2052574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2052672_2053623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|2053619_2054951_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|2056211_2058212_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|2058204_2058846_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|2058842_2059250_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|2059246_2060047_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|2060121_2060826_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|2060857_2061652_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|2061648_2062599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2062697_2063648_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|2063746_2064181_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|2064263_2066600_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|2066791_2067808_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2115202	2196077	4106388	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|2115202_2116153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2116149_2117100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|2117360_2118389_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|2118468_2119767_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|2119763_2120345_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|2120657_2124704_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|2124944_2132606_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|2132602_2133553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|2134692_2135166_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|2135305_2135926_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|2136061_2136862_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|2136916_2138008_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|2138029_2138473_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|2138501_2139134_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|2139244_2139661_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|2139653_2140346_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|2140452_2140827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|2140903_2141713_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|2141808_2142753_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|2142791_2143763_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|2143853_2144291_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|2144349_2145231_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|2146234_2147095_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|2147127_2148510_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|2148506_2149526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|2149898_2150393_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|2150400_2151141_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|2151221_2152826_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|2152865_2153654_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|2153779_2155945_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|2156825_2157638_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|2157650_2157959_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|2158076_2159807_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|2159808_2161011_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|2161083_2161752_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|2161873_2162341_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|2162476_2163859_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|2163855_2164980_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|2164976_2167613_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|2168028_2168979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|2172725_2173337_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|2173559_2175020_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|2175116_2176709_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|2177062_2177320_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2177321_2178662_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|2178757_2179447_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2179459_2180890_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|2182614_2183436_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|2183446_2185018_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|2185046_2186024_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|2186050_2186854_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|2186850_2187645_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|2187652_2188888_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|2188901_2189315_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2190064_2191015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|2191636_2193364_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|2193475_2194834_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|2194890_2195109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2195126_2196077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2315472	2367625	4106388	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|2315472_2316423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|2316440_2316593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|2316589_2316943_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|2316955_2317318_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|2317359_2317785_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|2317987_2319244_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|2319442_2320423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|2320572_2321814_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2321912_2322863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|2322871_2323567_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|2326388_2326988_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|2326998_2329164_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|2329187_2330972_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|2330971_2331061_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|2331755_2332028_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|2332027_2334094_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|2334090_2335041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2335139_2336090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|2336205_2336538_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|2336534_2337221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|2337207_2338167_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|2338199_2340569_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|2340568_2341201_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|2341302_2342643_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|2342689_2344045_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|2344335_2344572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|2344759_2345077_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|2345349_2345865_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|2346135_2346891_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|2347229_2347436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|2347443_2348103_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|2348397_2350602_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|2350712_2351936_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|2352058_2353033_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|2353100_2354294_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|2354308_2355109_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|2355105_2356962_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|2356958_2357564_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|2357582_2358968_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|2359693_2360920_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|2361008_2361791_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2361889_2362840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|2362866_2363640_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|2363651_2364893_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|2366674_2367625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2411550	2479638	4106388	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|2411550_2412039_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|2412156_2412735_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|2412840_2413209_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2413307_2414258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|2414264_2415377_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|2416063_2417266_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|2417469_2420130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|2420142_2423547_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|2424214_2426440_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|2426486_2426813_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|2426863_2427472_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|2427570_2428521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|2428590_2429355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|2429351_2429888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|2430054_2430906_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|2430965_2431592_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010929591.1|2431588_2432539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|2432637_2433750_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|2433739_2434741_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|2434846_2436358_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|2436354_2437659_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|2437770_2438331_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|2438598_2439153_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|2439608_2439824_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|2440078_2442676_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|2442672_2443860_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|2444520_2445135_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|2445223_2446345_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|2446362_2447268_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|2448160_2449111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|2449292_2450045_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|2450113_2450773_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|2450769_2451498_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|2451510_2453790_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|2453814_2454018_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|2454059_2454692_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|2454827_2455745_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|2455741_2456455_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|2456692_2457463_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|2457467_2458067_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|2458311_2459802_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|2459860_2460145_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|2460710_2461637_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|2461773_2462514_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|2462680_2464057_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|2464238_2465144_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|2466795_2468598_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|2468715_2469366_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|2469464_2470415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|2470436_2471657_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|2471842_2473255_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|2473318_2474386_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|2474385_2475873_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|2475882_2476827_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|2476986_2477685_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|2477762_2478668_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|2478687_2479638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2515589	2571180	4106388	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|2515589_2516540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|2516598_2517372_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|2517364_2518921_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2518917_2519868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|2521194_2521797_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|2522036_2522738_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|2522731_2523514_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|2523698_2524649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|2524747_2525485_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|2525674_2526433_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|2526479_2527469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|2527646_2528615_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|2530154_2531123_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|2531131_2532073_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2532546_2533557_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|2533547_2535062_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|2535058_2536405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|2536407_2537442_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|2537491_2539117_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|2539669_2540620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|2540724_2541672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|2541725_2543540_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|2543532_2544207_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|2544336_2547411_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|2547424_2547724_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|2548038_2548662_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|2548905_2549775_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|2549752_2550697_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|2550782_2551709_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|2551821_2552601_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|2552591_2553788_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|2553818_2554769_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|2554990_2555680_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|2555744_2556500_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|2556551_2557544_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2557553_2558507_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|2558622_2559585_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|2560986_2561415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2561411_2562362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|2562655_2563378_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|2563816_2565004_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|2565007_2565358_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|2567107_2568079_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|2568092_2568806_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|2568810_2569728_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|2569834_2570131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2570229_2571180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2803944	2873596	4106388	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|2803944_2806602_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2806679_2807882_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2807878_2808391_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2808513_2808951_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2809227_2810178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|2810276_2811227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2811390_2813286_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2813399_2813567_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2813630_2813867_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2814235_2815387_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2816950_2817901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2818352_2819354_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2819526_2820384_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2820380_2821643_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2821743_2822118_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2822190_2823378_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2823462_2824233_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2824346_2825111_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2825061_2826363_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2826359_2827166_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2828910_2829882_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2830038_2830551_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2830709_2831684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2832684_2833479_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2833504_2834311_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2834421_2835012_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2835022_2836201_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2836303_2836678_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2836930_2838262_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2838328_2841559_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2843049_2843796_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2843880_2844342_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2844379_2845438_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2845400_2847230_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2847269_2847842_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2849266_2850088_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2850406_2851729_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2852088_2852724_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2852683_2853634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2854504_2855377_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2855454_2856594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2856952_2858209_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2858214_2858742_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2858746_2859565_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2859564_2860287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2860308_2860623_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2860640_2861789_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2861819_2862695_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2862691_2864011_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2864083_2865280_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2865290_2866778_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2869372_2870272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2870409_2871375_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2871473_2872424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2872645_2873596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2885092	2934488	4106388	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2885092_2886043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2887180_2887477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2887651_2889004_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2889146_2890163_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2892142_2893156_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2893242_2894148_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2894304_2894649_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2894806_2895265_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2895278_2897495_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2897491_2898553_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2898581_2899556_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2899507_2900326_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2900338_2900947_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2901121_2901517_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2901535_2902975_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2903003_2903351_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2903369_2904320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2904972_2905923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2906006_2907824_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2907897_2908545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2908557_2909487_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2909656_2910121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2910368_2911049_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2911097_2912789_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2912804_2913356_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2913352_2913724_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2913836_2914673_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2914683_2915208_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2915305_2915485_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2915614_2916589_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2916719_2917076_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2917065_2917941_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2918039_2918924_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2918945_2920241_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2921189_2921840_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2921927_2923448_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2923705_2925571_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2926616_2927567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2927584_2927725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2928539_2928899_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2928886_2930323_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2930319_2930973_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2930969_2932163_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2932266_2933541_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2933537_2934488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	2945692	2986383	4106388	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2945692_2946643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2946741_2947692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2947651_2948065_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2948349_2948649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2949058_2951341_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2951806_2952001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2952026_2954057_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2954076_2954289_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2954566_2955106_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2955219_2956515_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2956591_2957749_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2957932_2958832_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2958850_2960155_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2960120_2961227_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2961314_2961551_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2961689_2962760_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2962763_2964119_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2964145_2965303_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2965308_2965947_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2965948_2967244_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2967293_2968580_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2968595_2969102_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2969098_2970247_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2970274_2970700_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2971022_2973905_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2973997_2974753_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2975518_2976868_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2976966_2977917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2978015_2978966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2979039_2979513_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2979538_2980747_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2980743_2981517_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2981516_2982140_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2982305_2982566_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2982869_2983451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2983517_2983772_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2983758_2986383_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 24
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3014166	3079714	4106388	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|3014166_3015117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|3015317_3016127_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|3016251_3017202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|3017198_3018092_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|3018216_3018411_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|3018410_3018752_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|3018761_3020624_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|3020753_3021266_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|3021268_3021592_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|3021593_3022004_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|3022041_3023253_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|3023270_3023783_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|3023998_3024490_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|3024742_3026779_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|3026856_3028059_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|3028187_3028838_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|3030395_3031346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|3031916_3032129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|3032146_3032878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|3032912_3033554_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|3033546_3034215_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|3036427_3037204_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|3037225_3038383_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|3038379_3038811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|3038807_3039605_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|3039624_3040026_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|3040092_3041064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|3041129_3042353_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|3042580_3043531_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|3043654_3046108_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|3046296_3047601_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|3047705_3048359_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|3048361_3049672_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|3049850_3050429_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|3050540_3050741_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|3051086_3051653_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|3051736_3051940_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|3052246_3052567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|3052608_3052890_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|3052964_3054221_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|3054603_3054933_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|3056502_3057324_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|3057323_3058463_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|3058469_3059366_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|3059380_3061288_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|3061647_3064260_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|3064312_3066613_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|3066609_3067818_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|3068079_3068454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3068450_3069401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|3069499_3071494_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|3071553_3072519_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|3072508_3075370_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|3075372_3075879_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|3075983_3077192_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|3077193_3078132_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|3078293_3078767_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3078763_3079714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3165891	3293099	4106388	transposase,protease,holin,tRNA	Planktothrix_phage(10.0%)	112	NA	NA
WP_010931070.1|3165891_3166842_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|3167143_3167620_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|3168243_3169881_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|3169911_3171225_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|3171358_3171676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|3171776_3173099_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3173095_3174046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|3174575_3175598_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|3175626_3176457_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|3176473_3178171_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|3178235_3179312_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|3179471_3180335_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|3180365_3180935_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|3180951_3181803_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|3182860_3183742_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|3183816_3184806_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|3184868_3185819_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|3185881_3186739_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|3186798_3187287_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|3188859_3190050_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|3190046_3191633_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|3191651_3192719_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|3192823_3194368_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|3194787_3196362_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|3196478_3197486_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|3197482_3198322_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|3198326_3199964_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|3199960_3200911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|3200928_3201072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|3201053_3202328_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|3202357_3202648_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|3202720_3203734_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|3203753_3205016_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|3205018_3205942_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|3205938_3207432_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|3207442_3208375_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|3208556_3209882_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|3209916_3211272_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|3211332_3212853_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|3213007_3213739_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|3213836_3215147_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|3215162_3216074_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|3216064_3216658_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|3216719_3217106_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|3217117_3217588_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|3217599_3218223_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|3218243_3220991_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_003820758.1|3227541_3228018_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3228170_3229283_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3229350_3229911_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3229934_3230267_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3230250_3231939_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3232058_3232847_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_010929584.1|3233554_3234505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3234949_3235261_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3235260_3235791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3235747_3235936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3235953_3236904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3237002_3237953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238242_3238707_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238721_3240227_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3240480_3242088_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242143_3243049_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243489_3244440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244538_3245489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245570_3246152_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246576_3246882_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246895_3248230_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248251_3248791_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807164.1|3248938_3249403_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931290.1|3249545_3250661_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807166.1|3250937_3251441_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_019248127.1|3251614_3251779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931288.1|3251769_3252492_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_010931287.1|3252488_3253385_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931286.1|3253381_3254317_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247300.1|3254277_3254946_+	DUF1007 family protein	NA	NA	NA	NA	NA
WP_003818434.1|3254936_3255905_+	putative membrane protein	NA	NA	NA	NA	NA
WP_010931283.1|3255953_3258095_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931282.1|3258107_3259088_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931281.1|3259102_3259795_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_003807183.1|3259821_3260733_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931280.1|3260775_3261666_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931279.1|3261662_3262517_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010925730.1|3262800_3263964_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_003818441.1|3264074_3264326_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_003807194.1|3264405_3265446_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_010931278.1|3265725_3267144_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_010931277.1|3267214_3267550_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267549_3268392_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268490_3269441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269505_3270477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270540_3271560_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271561_3272935_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273212_3273893_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3273968_3276032_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3276028_3277123_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277137_3278397_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3278416_3280105_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3280379_3281132_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281270_3282221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282533_3284012_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284018_3285128_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285139_3285820_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285841_3286597_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286732_3287617_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287704_3288286_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288546_3288846_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288997_3289477_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290196_3291633_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291629_3292133_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292148_3293099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3300340	3381987	4106388	transposase,protease,tRNA,integrase	Tupanvirus(22.22%)	59	3314945:3314963	3334833:3334851
WP_010929591.1|3300340_3301291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302678_3303626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303852_3304593_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304678_3305629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305646_3305802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307070_3308642_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308974_3310828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3310872_3313437_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313855_3314806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3314945:3314963	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3317671_3318166_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3318182_3319133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3319119_3319320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3319316_3320528_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3320543_3323495_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3323496_3326253_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3326763_3327810_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3328151_3329279_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3329558_3330650_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3330722_3331505_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3331501_3332098_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_029443719.1|3332226_3332841_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931310.1|3332963_3333914_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_010931311.1|3334122_3335022_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
3334833:3334851	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_003818921.1|3335070_3335670_-	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931312.1|3335666_3337553_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010925978.1|3337551_3338379_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931313.1|3338469_3339423_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003808489.1|3339524_3341204_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003808487.1|3341215_3341425_+	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_010931314.1|3341434_3342343_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818930.1|3342525_3343824_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_003818932.1|3343932_3345246_+	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_010931315.1|3345371_3347333_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_010931316.1|3347412_3348735_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003818936.1|3348731_3349442_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931317.1|3349459_3350875_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003808465.1|3350966_3351578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931319.1|3351856_3353239_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808462.1|3353245_3354811_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931320.1|3354818_3355949_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|3355945_3357100_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931322.1|3357096_3358218_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|3358214_3360140_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931324.1|3360186_3361323_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931325.1|3361323_3362694_-	membrane protein	NA	NA	NA	NA	NA
WP_010930472.1|3362695_3363721_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931326.1|3363732_3365007_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_003808448.1|3365112_3366216_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931327.1|3366944_3367613_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_023994724.1|3367742_3368174_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931328.1|3368226_3369198_+	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003816386.1|3369228_3369726_+	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931330.1|3369689_3371147_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_010931331.1|3371329_3372655_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931332.1|3374432_3375998_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931333.1|3376043_3376985_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931334.1|3376987_3377875_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931335.1|3379462_3380938_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_023995489.1|3381036_3381987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3400898	3445970	4106388	transposase,tRNA	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3400898_3401849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402615_3403710_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403702_3405037_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404990_3405674_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405699_3406863_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3406859_3407861_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407860_3408733_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408729_3409479_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409475_3410267_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410263_3411403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411678_3412464_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412497_3413280_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413283_3413673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414812_3415676_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415711_3416800_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416796_3417747_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418100_3421079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422005_3422884_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424832_3425783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425779_3426247_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426289_3427060_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427080_3427881_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427891_3429301_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429395_3430181_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430420_3431437_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431544_3431937_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432074_3432755_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432759_3433731_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433826_3434777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3436281_3436983_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3436982_3438407_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3439476_3440817_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3440932_3442696_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442807_3443686_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443798_3444614_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444617_3444869_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444953_3445970_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3463714	3516121	4106388	transposase,tRNA	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3463714_3464731_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464826_3465537_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465533_3466523_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466618_3468250_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468252_3468990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469145_3470018_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470367_3471507_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471503_3472163_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472234_3472867_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472896_3473415_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473425_3474535_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474581_3475436_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475437_3476340_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477562_3478513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3480269_3481259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481434_3482223_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482219_3483251_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483269_3483833_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483888_3485409_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485672_3486377_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486384_3487113_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487227_3487602_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487644_3488934_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488930_3490100_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490096_3490936_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490995_3491931_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491943_3492894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492992_3493955_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493986_3494346_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494470_3495373_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495374_3497147_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497181_3497958_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499281_3500232_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501083_3501404_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3501476_3502358_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3502474_3502717_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3502854_3503325_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3503337_3503877_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3503911_3505453_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3505551_3506457_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3506499_3507900_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3507909_3508332_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3508514_3509399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3509474_3510551_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3510857_3512960_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3513002_3515072_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515170_3516121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	3533239	3587040	4106388	transposase,tRNA	Catovirus(11.11%)	46	NA	NA
WP_010931400.1|3533239_3534190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534530_3535481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535579_3536530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536826_3537324_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537366_3539142_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539149_3540016_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540022_3540757_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541926_3542721_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543010_3543601_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543634_3544963_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545037_3546183_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546294_3547293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547255_3547690_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549206_3550091_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550087_3551293_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551289_3552150_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552262_3554053_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554093_3554738_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554759_3555068_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555233_3556520_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557953_3558904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560855_3562070_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562175_3563165_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563161_3563770_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563782_3564412_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564408_3565029_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565060_3565852_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566703_3567159_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567177_3568104_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568157_3569444_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570374_3571247_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571243_3572194_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572292_3573243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3573347_3573578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3573704_3574094_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3574110_3576492_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3576484_3577861_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3577876_3578872_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3578890_3579883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3580123_3580684_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3580688_3581015_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3581051_3581864_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3581874_3582957_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3583043_3584318_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3585040_3585991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3586089_3587040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011444	Bordetella pertussis strain B3585 chromosome, complete genome	4106388	4005454	4070368	4106388	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005454_4005940_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006028_4006166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006158_4007139_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007405_4008215_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008254_4008935_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008928_4009387_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009398_4009761_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009843_4010527_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010582_4010891_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010909_4011224_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011220_4013695_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013702_4015094_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015090_4015276_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015254_4015956_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015952_4016774_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016754_4017879_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017871_4018891_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019096_4019987_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020233_4021025_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021107_4021482_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021459_4022869_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022861_4024244_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024578_4026183_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026260_4027232_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027242_4028169_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486111.1|4028559_4029510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029679_4030906_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031105_4031972_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031964_4032927_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033027_4033978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034076_4035027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035125_4036076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036072_4037566_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037562_4040670_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040666_4043735_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043731_4044982_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045162_4045915_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045956_4046601_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046609_4047590_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047689_4048433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048515_4048863_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048960_4049803_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049847_4050735_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050761_4050950_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051047_4052505_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052491_4054018_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054036_4054504_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054503_4055526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055646_4056387_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056441_4057542_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057543_4058734_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058853_4059870_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060188_4060860_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060856_4061765_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061976_4062624_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066484_4067552_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067562_4068372_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068461_4069235_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069235_4069400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069417_4070368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
