The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	27282	71085	4104305	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	78683	137157	4104305	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	165941	226452	4104305	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165941_166892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168335_169238_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170127_171558_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171591_172221_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175349_176300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177415_177943_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178034_178850_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182384_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183473_185378_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185374_189049_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189680_190103_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190130_190550_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190578_191025_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191803_194074_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194149_195355_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195453_196404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196506_197142_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197138_198032_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198426_199527_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199608_199983_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200042_202907_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203051_203792_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203861_205073_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205101_206070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206683_207634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207790_208114_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208218_209259_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209264_210044_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210089_210386_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210411_210687_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210743_211388_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211387_212074_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212272_213055_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213105_213831_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213862_215212_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215323_216256_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216713_219509_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220102_222946_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223116_223836_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223874_224423_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224577_225477_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225501_226452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	234384	287972	4104305	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234384_235335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235421_236372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236368_237319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237417_238215_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239164_239575_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240596_241340_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241383_242427_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242597_244700_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246110_247067_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247085_247577_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247573_248929_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248929_249628_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249624_250326_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250578_251628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251733_252675_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252671_254561_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254647_255286_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255428_256814_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256744_257281_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257432_258824_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258840_259821_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259956_260940_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261004_261904_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262010_263765_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263772_264897_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264910_265891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266621_267572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268131_268677_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268802_270380_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270395_271550_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271563_271689_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271685_273437_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273433_275113_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275175_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276866_277145_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278188_279139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279125_279341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281473_282322_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	355966	415434	4104305	tRNA,transposase	Streptococcus_phage(50.0%)	56	NA	NA
WP_005012067.1|355966_356917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|357028_357751_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|357849_358593_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|358823_360332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|360451_361183_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|361227_362688_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|362712_363192_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|363210_364221_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|364435_365176_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|365382_366393_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|366352_367303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|368351_368990_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|369026_370370_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|370792_371581_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|371718_372393_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|372506_373961_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|373963_375502_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|375504_375813_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|376043_377087_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|377175_378060_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|378046_378610_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|378623_380576_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|380572_381709_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|381734_382790_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|382800_384294_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|384506_385082_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|385131_385878_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|385877_386780_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|387041_387830_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|387970_388462_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|388458_389202_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|389198_389792_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|389800_390277_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|390401_391340_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|391336_391909_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|391905_392856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392992_393910_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393906_394155_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394151_395357_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395429_396425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396447_397668_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397664_398309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400039_400849_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401153_402107_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_005013747.1|402205_403156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486049.1|403254_404238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404164_404866_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404914_405685_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405681_406860_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407027_408734_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408730_409627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409667_411257_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|411306_412299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412367_412967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|413427_414408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414483_415434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	470598	588493	4104305	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|470598_471549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|471647_472598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|473320_474595_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|474681_475764_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|475774_476587_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|476623_476950_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|476954_477515_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|477755_478748_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|478766_479762_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|479777_481154_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|481146_483528_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|483544_483934_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|484060_484291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|484395_485346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|485444_486395_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|486391_487264_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|488194_489481_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|489534_490461_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|490479_490935_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|491786_492578_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|492609_493230_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|493226_493856_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|493868_494477_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|494473_495463_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|495568_496783_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|498734_499685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|501118_502405_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|502570_502879_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|502900_503545_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|503585_505376_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|505488_506349_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|506345_507551_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|507547_508432_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|509948_510383_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|510345_511344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|511455_512601_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|512675_514004_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|514037_514628_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|514917_515712_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|516881_517616_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|517622_518489_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|518496_520272_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|520314_520812_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|521108_522059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|522157_523108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|523448_524399_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|526722_527871_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|527915_528539_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|528691_529684_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|529680_530418_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|530497_531319_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|531407_532271_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|532397_532634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|534608_535643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|535701_536679_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|536686_537607_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|537603_539304_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|539306_540212_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|540255_541389_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|541517_542468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|542566_544636_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|544678_546781_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|547087_548164_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|548239_549124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|549306_549729_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|549738_551139_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|551181_552087_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|552185_553727_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|553761_554301_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|554313_554784_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|554921_555164_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|555280_556162_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|556234_556555_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|557406_558357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|559680_560457_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|560491_562264_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|562265_563168_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|563292_563652_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|563683_564646_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929591.1|564744_565695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|565707_566643_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|566702_567542_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|567538_568708_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|568704_569994_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|570036_570411_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|570525_571254_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|571261_571966_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|572229_573750_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|573805_574369_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|574387_575419_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|575415_576204_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|576379_577369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|579125_580076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|581298_582201_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|582202_583057_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|583103_584213_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|584223_584742_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|584771_585404_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|585475_586135_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|586131_587271_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|587620_588493_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	592907	656740	4104305	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|592907_593924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|594195_594822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|594877_596005_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|596010_601728_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|602295_603240_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|603428_604364_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|604481_606053_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|606132_607341_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|607838_608756_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|611116_611338_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|611668_612685_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|612769_613021_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|613024_613840_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|613952_614831_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|614942_616706_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|616821_618162_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|619231_620656_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|620655_621357_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|622861_623812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|623907_624879_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|624883_625564_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|625701_626094_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|626201_627218_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|627457_628243_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|628337_629747_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|629757_630558_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|630578_631349_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|631391_631859_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|631855_632806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|634754_635633_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|636559_639538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|639891_640842_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|640838_641927_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|641962_642826_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|643965_644355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|644358_645141_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|645174_645960_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|646235_647375_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|647371_648163_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|648159_648909_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|648905_649778_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|649777_650779_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|650775_651939_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|651964_652648_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|652601_653936_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|653928_655023_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|655789_656740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	675651	752960	4104305	tRNA,integrase,protease,transposase	Bacillus_phage(20.0%)	59	722788:722806	742676:742694
WP_023995489.1|675651_676602_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|676700_678176_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|679763_680651_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|680653_681595_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|681640_683206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|684983_686309_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|686491_687949_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|687912_688410_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|688440_689412_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|689464_689896_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|690025_690694_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|691422_692526_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|692631_693906_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|693917_694943_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|694944_696315_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|696315_697452_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|697498_699424_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|699420_700542_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|700538_701693_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|701689_702820_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|702827_704393_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|704399_705782_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|706060_706672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|706763_708179_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|708196_708907_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|708903_710226_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|710305_712267_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|712392_713706_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|713814_715113_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|715295_716204_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|716213_716423_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|716434_718114_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|718215_719169_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|719259_720087_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|720085_721972_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|721968_722568_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|722616_723516_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
722788:722806	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|723724_724675_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|724797_725412_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|725540_726137_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|726133_726916_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|726988_728080_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|728359_729487_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|729828_730875_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|731385_734142_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|734143_737095_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|737110_738322_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|738318_738519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|738505_739456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|739472_739967_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|739970_740228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|740771_741683_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|741764_742049_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|742832_743783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
742676:742694	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|744201_746766_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|746810_748664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|748996_750568_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|751836_751992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|752009_752960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1007251	1101289	4104305	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1007251_1008202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1008304_1008967_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1009061_1009232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1009584_1010586_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1010588_1011785_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1011805_1012609_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1012689_1012986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1013016_1013580_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1013620_1014478_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1014485_1015235_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1015256_1016129_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1016157_1016937_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1016970_1017768_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1020422_1020815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1020808_1021669_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1021672_1022635_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1023411_1024101_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1024961_1025912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1026261_1027131_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1027201_1027897_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1027886_1028396_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1028392_1029613_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1029560_1030463_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1031349_1032636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1032674_1034048_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1034086_1034788_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1035086_1036076_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1036176_1036638_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1036653_1037202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1037343_1038819_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1038924_1040016_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1040019_1040802_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1040811_1041600_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1042725_1043160_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1043156_1044167_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1044210_1045137_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1045424_1045793_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1045845_1045992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1046009_1046960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1047004_1049431_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1049479_1050172_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1050244_1051444_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1051461_1052367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1052482_1053412_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1053437_1054784_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1054796_1055561_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1055574_1056357_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1056549_1057500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1057561_1058671_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1059183_1060020_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1060146_1061055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1061051_1062002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1062019_1062190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1062387_1062930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1063965_1064916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1065157_1065526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1065571_1066696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1067830_1068571_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1068674_1069295_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1069398_1070349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1070345_1072454_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1072598_1073258_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1073289_1073754_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1074029_1074215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1074266_1075019_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1075025_1076288_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1076329_1077568_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1078645_1079773_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1079783_1080611_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1080597_1081464_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1082830_1083235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1083326_1084277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1084294_1084459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1084646_1085558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1085572_1086283_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1086279_1087524_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1087525_1087960_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1087988_1088294_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1088392_1089343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1089399_1090548_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1090628_1091579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1092110_1092908_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1092955_1093609_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1093565_1094654_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1094818_1097044_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1099321_1100218_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162490686.1|1100171_1100321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1100338_1101289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1131675	1202646	4104305	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1131675_1132626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1132682_1133795_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1136178_1137129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1137719_1138496_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1138613_1138877_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138977_1139982_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1140182_1141784_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1141809_1142568_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1142659_1143316_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1143406_1144171_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1144180_1144369_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1144424_1145468_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1145464_1145878_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1145874_1146495_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1146775_1147726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147893_1149285_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1149357_1149936_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1150052_1151450_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1151565_1152771_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1152870_1153389_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1153483_1153729_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153956_1154271_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1154369_1159550_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1159546_1161715_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1161770_1164086_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1164090_1165410_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1165428_1167102_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1167106_1167775_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167931_1171753_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1171907_1172066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1172083_1173034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1173055_1174201_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1174349_1175279_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1175275_1176364_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1176360_1177164_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1177160_1177892_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177949_1179239_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1179335_1179938_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1184491_1184830_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1185537_1185804_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1187510_1188461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1188457_1189789_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1191049_1193050_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1193042_1193684_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1193680_1194088_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1194084_1194885_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194959_1195664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1195695_1196490_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1196486_1197437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1197535_1198486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1198584_1199019_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1199101_1201438_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1201629_1202646_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1250040	1330915	4104305	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1250040_1250991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250987_1251938_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1252198_1253227_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1253306_1254605_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1254601_1255183_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1255495_1259542_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1259782_1267444_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1267440_1268391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1269530_1270004_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1270143_1270764_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1270899_1271700_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1271754_1272846_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1272867_1273311_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1273339_1273972_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1274082_1274499_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1274491_1275184_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1275290_1275665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1275741_1276551_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1276646_1277591_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1277629_1278601_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1278691_1279129_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1279187_1280069_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1281072_1281933_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1281965_1283348_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1283344_1284364_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1284736_1285231_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1285238_1285979_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1286059_1287664_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1287703_1288492_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1288617_1290783_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1291663_1292476_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1292488_1292797_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1292914_1294645_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1294646_1295849_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1295921_1296590_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1296711_1297179_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1297314_1298697_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1298693_1299818_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1299814_1302451_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1302866_1303817_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1307563_1308175_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1308397_1309858_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1309954_1311547_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1311900_1312158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1312159_1313500_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1313595_1314285_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1314297_1315728_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1317452_1318274_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1318284_1319856_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1319884_1320862_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1320888_1321692_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1321688_1322483_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1322490_1323726_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1323739_1324153_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1324902_1325853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1326474_1328202_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1328313_1329672_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1329728_1329947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1329964_1330915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1450310	1502468	4104305	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1450310_1451261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1451278_1451431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1451427_1451781_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451793_1452156_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452197_1452623_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452825_1454082_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454280_1455261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455410_1456652_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1456750_1457701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457709_1458405_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461226_1461826_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461836_1464002_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1464025_1465810_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465809_1465899_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466593_1466866_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466865_1468932_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468928_1469879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469977_1470928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1471043_1471376_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1471372_1472059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1472045_1473005_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1473037_1475407_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1475406_1476039_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1476140_1477481_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1477527_1478883_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1479173_1479410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1479597_1479915_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1480187_1480703_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1480973_1481729_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1482067_1482274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1482281_1482941_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1483235_1485440_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1485550_1486774_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1486896_1487871_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1487938_1489132_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1489146_1489947_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1489943_1491800_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1491796_1492402_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1492420_1493806_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1494531_1495758_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1495846_1496629_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1496727_1497678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1497704_1498478_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1498489_1499731_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1501517_1502468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1546393	1614479	4104305	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1546393_1546882_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546999_1547578_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547683_1548052_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548150_1549101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549107_1550220_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550906_1552109_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1552312_1554973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1554985_1558390_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559057_1561283_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561329_1561656_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561706_1562315_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1562413_1563364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563433_1564198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1564194_1564731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564897_1565749_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565808_1566435_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566431_1567382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567480_1568593_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568582_1569584_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569689_1571201_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571197_1572502_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572613_1573174_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573441_1573996_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574451_1574667_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574921_1577519_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577515_1578703_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1579361_1579976_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1580064_1581186_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581203_1582109_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1583001_1583952_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584133_1584886_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584954_1585614_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585610_1586339_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586351_1588631_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588655_1588859_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588900_1589533_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589668_1590586_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590582_1591296_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591533_1592304_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592308_1592908_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593152_1594643_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594701_1594986_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1595551_1596478_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596614_1597355_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597521_1598898_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599079_1599985_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601636_1603439_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1603556_1604207_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604305_1605256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1605277_1606498_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1606683_1608096_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1608159_1609227_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1609226_1610714_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1610723_1611668_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1611827_1612526_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1612603_1613509_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1613528_1614479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1650428	1706019	4104305	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650428_1651379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651437_1652211_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652203_1653760_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653756_1654707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656033_1656636_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656875_1657577_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657570_1658353_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658537_1659488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659586_1660324_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660513_1661272_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661318_1662308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662485_1663454_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664993_1665962_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665970_1666912_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667385_1668396_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668386_1669901_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669897_1671244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1671246_1672281_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672330_1673956_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674508_1675459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675563_1676511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676564_1678379_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678371_1679046_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679175_1682250_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682263_1682563_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682877_1683501_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1683744_1684614_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684591_1685536_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685621_1686548_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686660_1687440_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687430_1688627_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688657_1689608_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689829_1690519_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1690583_1691339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691390_1692383_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692392_1693346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693461_1694424_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695825_1696254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696250_1697201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1697494_1698217_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698655_1699843_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1699846_1700197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701946_1702918_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702931_1703645_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703649_1704567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704673_1704970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705068_1706019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	1938783	2008435	4104305	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1938783_1941441_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1941518_1942721_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1942717_1943230_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1943352_1943790_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1944066_1945017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1945115_1946066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1946229_1948125_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1948238_1948406_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1948469_1948706_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1949074_1950226_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1951789_1952740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1953191_1954193_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1954365_1955223_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1955219_1956482_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1956582_1956957_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1957029_1958217_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1958301_1959072_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1959185_1959950_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1959900_1961202_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1961198_1962005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1963749_1964721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1964877_1965390_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1965548_1966523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1967523_1968318_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1968343_1969150_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1969260_1969851_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1969861_1971040_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1971142_1971517_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1971769_1973101_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1973167_1976398_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1977888_1978635_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1978719_1979181_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1979218_1980277_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1980239_1982069_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1982108_1982681_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1984105_1984927_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1985245_1986568_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1986927_1987563_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1987522_1988473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1989343_1990216_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1990293_1991433_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1991791_1993048_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1993053_1993581_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1993585_1994404_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1994403_1995126_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1995147_1995462_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1995479_1996628_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1996658_1997534_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1997530_1998850_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1998922_2000119_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2000129_2001617_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2004211_2005111_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2005248_2006214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2006312_2007263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2007484_2008435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2019931	2069327	4104305	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2019931_2020882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2022019_2022316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2022490_2023843_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2023985_2025002_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2026981_2027995_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2028081_2028987_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2029143_2029488_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2029645_2030104_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2030117_2032334_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2032330_2033392_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2033420_2034395_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2034346_2035165_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2035177_2035786_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2035960_2036356_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2036374_2037814_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2037842_2038190_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2038208_2039159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2039811_2040762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2040845_2042663_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2042736_2043384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2043396_2044326_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2044495_2044960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2045207_2045888_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2045936_2047628_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2047643_2048195_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2048191_2048563_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2048675_2049512_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2049522_2050047_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2050144_2050324_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2050453_2051428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2051558_2051915_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2051904_2052780_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2052878_2053763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2053784_2055080_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2056028_2056679_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2056766_2058287_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2058544_2060410_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2061455_2062406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2062423_2062564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2063378_2063738_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2063725_2065162_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2065158_2065812_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2065808_2067002_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2067105_2068380_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2068376_2069327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2080531	2121222	4104305	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2080531_2081482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2081580_2082531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2082490_2082904_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2083188_2083488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2083897_2086180_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2086645_2086840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2086865_2088896_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2088915_2089128_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2089405_2089945_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2090058_2091354_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2091430_2092588_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2092771_2093671_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2093689_2094994_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094959_2096066_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2096153_2096390_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2096528_2097599_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2097602_2098958_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2098984_2100142_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2100147_2100786_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2100787_2102083_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2102132_2103419_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2103434_2103941_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2103937_2105086_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2105113_2105539_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2105861_2108744_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2108836_2109592_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2110357_2111707_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2111805_2112756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2112854_2113805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2113878_2114352_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2114377_2115586_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2115582_2116356_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2116355_2116979_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2117144_2117405_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2117708_2118290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2118356_2118611_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2118597_2121222_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2149005	2214554	4104305	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2149005_2149956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2150156_2150966_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2151090_2152041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2152037_2152931_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2153055_2153250_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2153249_2153591_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2153600_2155463_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2155592_2156105_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2156107_2156431_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2156432_2156843_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2156880_2158092_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2158109_2158622_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2158837_2159329_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2159581_2161618_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2161695_2162898_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2163026_2163677_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2165234_2166185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166755_2166968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166985_2167717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167751_2168393_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168385_2169054_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171266_2172043_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172064_2173222_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173218_2173650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2173646_2174444_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174463_2174865_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174931_2175903_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175968_2177192_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177419_2178370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178493_2180947_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181135_2182440_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182544_2183198_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183200_2184511_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2184689_2185268_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185379_2185580_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185925_2186492_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186575_2186779_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187085_2187406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187447_2187729_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187803_2189060_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189442_2189772_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191342_2192164_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192163_2193303_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193309_2194206_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2194220_2196128_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196487_2199100_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199152_2201453_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201449_2202658_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2202919_2203294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203290_2204241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204339_2206334_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206393_2207359_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207348_2210210_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210212_2210719_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210823_2212032_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212033_2212972_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213133_2213607_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213603_2214554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2507152	2565396	4104305	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_010929591.1|2507152_2508103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508582_2509239_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509253_2510921_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510923_2511553_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511764_2512859_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2513003_2513816_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2513819_2515403_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2515573_2516704_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516890_2517967_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518048_2518699_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518713_2520117_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520400_2521219_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2521215_2521920_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522819_2523935_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523968_2524343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524365_2525523_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525535_2525769_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526403_2529373_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529387_2529597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529748_2530378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2530374_2532432_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532488_2533169_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533165_2533726_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533732_2534830_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534982_2535576_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535572_2536865_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536878_2537421_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537430_2538267_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538300_2539362_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539403_2540456_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540471_2540774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540915_2541866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2541883_2542048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2542044_2543739_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543735_2544821_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544868_2545768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545778_2546423_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547444_2550687_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550697_2551852_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552078_2553041_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2553139_2554090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554188_2555139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2555148_2555838_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555897_2556335_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2556380_2557274_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2557321_2558494_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2558490_2559645_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2559841_2560192_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2560181_2560616_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2560632_2561583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2561730_2562198_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2562178_2563336_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2563401_2564328_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2564445_2565396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2607676	2674176	4104305	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607676_2608627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608996_2609569_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609571_2610582_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610574_2611075_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611085_2611427_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2611495_2612230_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612246_2612516_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612538_2613327_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613373_2614390_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614606_2616049_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616227_2617847_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617967_2619788_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619866_2621399_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621432_2623079_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623148_2624171_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624188_2625322_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625324_2626014_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2626013_2626799_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626842_2627607_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627645_2629067_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629132_2629837_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629884_2630304_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630316_2630724_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630907_2631618_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631744_2632035_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632052_2632535_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637040_2638195_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638500_2639517_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639763_2640552_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640618_2641299_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641295_2642066_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642164_2643115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643170_2644088_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644098_2645277_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645296_2646292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647880_2648489_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648476_2649517_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649534_2650497_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650493_2651687_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651683_2652481_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652506_2653493_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653511_2655551_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655752_2656433_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656446_2657358_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657354_2657933_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658071_2658977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658984_2662404_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662391_2664992_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665947_2666580_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666973_2667732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667728_2668931_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669118_2670069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670976_2672122_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672108_2672864_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672980_2673160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673225_2674176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	2856579	3008227	4104305	tRNA,holin,transposase	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2856579_2857530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857628_2858510_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858587_2859967_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860005_2860851_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860866_2861181_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861213_2861750_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861922_2862498_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862600_2863338_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863405_2865043_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865150_2865906_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865893_2866856_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866963_2867758_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930212.1|2870059_2872435_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872515_2873871_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875349_2876072_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876126_2877110_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877239_2878190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878186_2879089_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879176_2879935_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879947_2881039_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881136_2882564_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882793_2884008_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884053_2886924_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889334_2889823_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889948_2892645_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892799_2895082_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895246_2895879_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895977_2896928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896974_2897529_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897596_2898442_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898511_2899480_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899479_2901276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2903175_2907102_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907837_2911068_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911349_2912177_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912210_2912906_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912898_2914179_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914188_2915166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915147_2916848_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916950_2918054_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918084_2918840_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918846_2920367_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920409_2920712_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920708_2921341_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921419_2923285_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923281_2924076_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924104_2925220_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926124_2927003_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927002_2927827_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927994_2928945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929157_2932007_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931988_2932717_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932857_2934321_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934317_2934689_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934706_2936020_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936056_2936515_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936469_2936610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936627_2937578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937574_2938588_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938727_2939714_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940072_2940780_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941360_2942311_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942462_2943065_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943083_2943716_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943760_2944012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943953_2945840_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945858_2946701_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946697_2948056_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948276_2949071_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949301_2950795_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951030_2953112_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953306_2954347_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954481_2955498_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955519_2956377_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956421_2957198_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2957410_2957548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2957565_2958516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958542_2959007_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960213_2962502_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962618_2963491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963533_2964688_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964722_2965553_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965636_2967181_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967223_2967583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967584_2967998_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968038_2968356_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968440_2969157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969420_2970842_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010929956.1|2972146_2973097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_054604396.1|2975037_2976054_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976389_2977031_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977121_2978558_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978715_2979789_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979785_2980922_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981066_2981411_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2981477_2983358_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2983407_2984343_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984675_2985692_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986629_2988057_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988053_2989076_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989065_2989539_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989679_2990567_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990563_2992207_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992203_2993211_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994041_2995058_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995157_2995790_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995798_2996188_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996240_2997293_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998156_2999863_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999936_3000437_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000451_3002509_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002535_3002829_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002930_3003878_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003890_3004766_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004886_3005447_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005481_3005805_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006240_3006978_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007276_3008227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	3029178	3101672	4104305	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3029178_3030129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030171_3031347_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031568_3033359_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033371_3035033_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035045_3037751_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038043_3039798_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039794_3040421_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040417_3041269_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3041398_3043459_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043645_3044260_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044405_3044657_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044726_3046109_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046105_3049285_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050092_3051010_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051061_3051793_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051852_3052425_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053933_3054950_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055087_3056137_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056241_3057192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057287_3058013_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058223_3058604_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058909_3059782_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059789_3060170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060323_3061598_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063085_3063994_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064791_3065856_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3067692_3068727_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068916_3069558_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069640_3071467_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071710_3072640_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072639_3073389_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073460_3074375_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074394_3075540_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075600_3076512_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076592_3077543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077641_3078226_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078260_3079250_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079246_3080188_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080184_3081405_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081447_3081762_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081953_3082313_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082314_3084030_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084217_3084889_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084903_3086232_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086228_3087128_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087214_3088300_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088292_3089423_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089425_3092107_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092477_3093059_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093184_3093910_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093906_3094584_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094799_3095981_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096753_3096936_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096965_3097916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098045_3098438_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098714_3099626_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099750_3100725_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100721_3101672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	3233155	3302158	4104305	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3233155_3234106_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234102_3235122_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235131_3237840_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237987_3238644_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238742_3239693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239840_3240734_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240933_3242628_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242662_3243589_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243657_3244755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244773_3245637_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245648_3246431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246427_3247546_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247542_3249075_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249115_3250123_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250267_3250990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251005_3252028_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252344_3253079_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253163_3254909_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254905_3255658_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255702_3256659_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256747_3257314_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257321_3258182_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258211_3258940_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258971_3259655_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260492_3261407_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261471_3262380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262470_3263895_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263896_3265219_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265215_3267354_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267431_3272552_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272652_3272961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273030_3273588_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273603_3275085_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275139_3276993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277255_3278593_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278627_3280625_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280642_3282691_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282821_3283688_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283956_3284922_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285036_3286185_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286609_3286921_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286954_3287215_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287364_3288498_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288568_3289705_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289870_3290665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290727_3291171_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291286_3292237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292359_3292767_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292839_3295035_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295256_3296207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296166_3296691_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296822_3297794_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297913_3300358_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300373_3300964_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301207_3302158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011443	Bordetella pertussis strain B3582 chromosome, complete genome	4104305	3317604	3417717	4104305	tail,tRNA,terminase,protease,transposase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317604_3318555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319286_3319664_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319648_3320350_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320493_3321186_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321185_3322289_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322398_3324771_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324767_3326327_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326351_3327149_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327180_3328326_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328430_3329873_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329875_3331105_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333242_3334193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335322_3335880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335855_3336206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336374_3337169_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337165_3338215_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338214_3338904_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338990_3339488_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339519_3340836_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340852_3341827_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341863_3342322_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342321_3343002_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3343004_3343433_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343485_3345216_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345281_3345854_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345834_3346521_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346876_3347548_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347876_3348098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348097_3348379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348375_3348891_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348890_3349442_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349420_3349663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349667_3350480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350479_3350743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350783_3350981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350961_3351378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351382_3355339_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355331_3355721_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355717_3356251_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356318_3356678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356687_3359300_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359325_3359616_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359633_3359963_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359972_3360491_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360745_3361246_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361253_3361676_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361672_3362071_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362067_3362463_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362462_3362651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362664_3363147_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363209_3363461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364135_3365086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365514_3366117_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366239_3366482_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366487_3367543_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367571_3368990_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368992_3370270_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370256_3370742_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371381_3372332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372349_3372571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372588_3373278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373270_3373522_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374076_3374688_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374759_3374966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375217_3376168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376266_3377340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377507_3378302_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378341_3378866_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378858_3380601_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380810_3381569_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381571_3382279_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382295_3383177_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383187_3383946_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383914_3384670_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384739_3386158_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386179_3386830_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386963_3387299_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387387_3388338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388414_3390235_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390239_3391313_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391435_3392404_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392477_3393389_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393407_3393980_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394060_3394609_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394608_3396198_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396267_3396507_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396547_3397573_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397638_3398820_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398916_3399369_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399378_3400719_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3401035_3402073_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402454_3402814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402897_3403839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077085067.1|3403913_3404864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405157_3406252_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406342_3407215_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407236_3408076_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408151_3409669_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409765_3410866_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410882_3411305_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411327_3411540_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411586_3412507_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412689_3413439_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413441_3413771_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3414058_3415411_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415422_3415806_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415867_3416668_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416766_3417717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
