The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	27282	70036	4109988	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	77634	123122	4109988	transposase,tRNA	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	165941	226447	4109988	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165941_166892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168335_169238_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170127_171558_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171591_172221_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175349_176300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177415_177943_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178034_178850_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182384_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183473_185378_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185374_189049_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189680_190103_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190130_190550_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190578_191025_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191803_194074_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194144_195350_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195448_196399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196501_197137_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197133_198027_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198421_199522_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199603_199978_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200037_202902_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203046_203787_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203856_205068_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205096_206065_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206678_207629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207785_208109_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208213_209254_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209259_210039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210084_210381_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210406_210682_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210738_211383_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211382_212069_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212267_213050_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213100_213826_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213857_215207_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215318_216251_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216708_219504_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220097_222941_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223111_223831_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223869_224418_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224572_225472_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225496_226447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	234379	287967	4109988	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234379_235330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235416_236367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236363_237314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237412_238210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239159_239570_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240591_241335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241378_242422_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242592_244695_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246105_247062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247080_247572_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247568_248924_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248924_249623_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249619_250321_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250573_251623_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251728_252670_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252666_254556_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254642_255281_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255423_256809_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256739_257276_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257427_258819_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258835_259816_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259951_260935_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260999_261899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262005_263760_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263767_264892_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264905_265886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266616_267567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268126_268672_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268797_270375_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270390_271545_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271558_271684_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271680_273432_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273428_275108_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275170_275719_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276861_277140_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278183_279134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279120_279336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279411_279573_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280239_280689_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280698_281310_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281468_282317_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282342_283725_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283789_284431_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284570_285029_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285053_285830_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285883_287020_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287016_287967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	391900	449409	4109988	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391900_392851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392987_393905_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393901_394150_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394146_395352_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395424_396420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396442_397663_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397659_398304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400034_400844_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401148_402102_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402200_403184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403110_403812_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403860_404631_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404627_405806_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405973_407680_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407676_408573_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408613_410203_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410252_411245_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411313_411913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412373_413354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413429_414380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414468_415383_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415379_416039_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416128_417052_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417057_417513_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417509_418613_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418568_418841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418800_420420_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420416_421475_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421604_422099_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422191_423169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423364_424570_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424566_426078_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426093_427407_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427597_427777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428186_428921_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431365_432316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432447_432846_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433256_433727_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433815_434160_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434259_435660_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437448_437967_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438077_438833_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439028_440261_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440253_441039_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441105_442077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442087_443065_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443190_444363_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444389_445418_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445483_446677_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448458_449409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	591463	652655	4109988	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591463_592414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592889_593780_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593776_594598_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594798_595290_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595308_596382_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596428_597532_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597607_598228_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598248_598758_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598812_599064_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599127_600261_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600268_600655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600651_603171_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603599_603938_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603934_604441_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604502_605303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605413_606355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606448_607984_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609663_611514_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611517_612351_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612350_613292_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613543_614515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614656_616945_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617251_618160_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618214_619180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619254_620916_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620987_621698_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621846_622797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623495_623879_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623936_624539_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624556_624958_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625073_625985_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625981_626563_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627357_628092_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628132_629182_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629329_629908_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630294_631272_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631365_635760_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635960_636809_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636967_637780_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637835_638786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638884_639685_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639746_640130_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640141_641494_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641781_642111_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642113_642863_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643045_643966_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644012_644225_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644247_644670_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644686_645787_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645883_647401_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647476_648316_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648337_649210_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649300_650395_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650688_651639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651713_652655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	657979	704170	4109988	transposase,tail,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657979_659005_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659045_659285_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659354_660944_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660943_661492_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661572_662145_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662163_663075_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663148_664117_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664239_665313_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665317_667138_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667214_668165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668253_668589_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668722_669373_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669394_670813_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670882_671638_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671606_672365_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672375_673257_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673273_673981_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673983_674742_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674951_676694_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676686_677211_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677250_678045_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678212_679286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679384_680335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680586_680793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680864_681476_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682030_682282_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682274_682964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683220_684171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684810_685296_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685282_686560_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686562_687981_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688009_689065_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689070_689313_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689435_690038_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690466_691417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692091_692343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692405_692888_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692901_693090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693089_693485_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693481_693880_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693876_694299_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694306_694807_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695061_695580_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695589_695919_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695936_696227_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696252_698865_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698874_699234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699301_699835_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699831_700221_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700213_704170_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	710336	764266	4109988	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710336_712067_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712119_712548_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712550_713231_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713230_713689_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713725_714700_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714716_716033_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716064_716562_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716648_717338_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717337_718387_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718383_719178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719346_719697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719672_720230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721359_722310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724447_725677_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725679_727122_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727226_728372_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728403_729201_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729225_730785_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730781_733154_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733263_734367_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734366_735059_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735202_735904_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735888_736266_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736997_737948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738107_738980_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739320_739539_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739578_740958_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740999_742397_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742436_744089_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744092_744977_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744976_745918_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745996_747616_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747782_748598_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748665_749235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749235_750186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750840_751938_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751971_753237_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753394_754345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754588_755179_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755194_757639_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757758_758730_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758861_759386_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759345_760296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760517_762713_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762785_763193_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763315_764266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	887904	955880	4109988	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887904_888921_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889117_890101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891699_893088_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893118_894108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894218_895451_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895732_896533_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896555_898787_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899574_900021_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900042_900789_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900932_901910_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902543_903155_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903148_904366_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904506_905457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905453_906173_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906293_908453_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908543_908813_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908901_909108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909106_909634_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909652_910432_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910599_911616_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911688_912180_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912190_913906_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915069_916020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916016_917849_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918247_918907_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919434_920115_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920396_921113_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921127_922429_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924573_927462_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927685_929038_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929066_929588_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929584_931039_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931073_931322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931427_932303_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932328_933384_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933396_934188_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934220_935591_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936767_937718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937770_937992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938151_938364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938483_939602_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939698_939914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940107_940359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940471_941422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941418_941802_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941856_943671_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943820_944648_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944693_945674_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945670_945883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945879_947061_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947224_947959_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947960_950573_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950708_952622_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953237_953648_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953745_954831_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954929_955880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	999409	1071926	4109988	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999409_1000360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000464_1001514_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001651_1002668_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004176_1004749_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004808_1005540_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005591_1006509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007316_1010496_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010492_1011875_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011944_1012196_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012341_1012956_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013142_1015203_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015332_1016184_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016180_1016807_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016803_1018558_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018850_1021556_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021568_1023230_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023242_1025033_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025254_1026430_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1026472_1027423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027521_1028262_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028456_1030493_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030510_1031521_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031638_1032832_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032861_1033635_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033631_1034822_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034847_1035786_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035782_1038131_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038285_1038927_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040256_1040409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040440_1040989_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1041007_1041493_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041670_1042609_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042611_1042929_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042974_1043919_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045599_1046250_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046303_1046639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046635_1047496_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047512_1047794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047867_1048131_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048374_1049325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049623_1050361_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050796_1051120_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051154_1051715_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051835_1052711_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052723_1053671_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053772_1054066_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054092_1056150_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056164_1056665_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056738_1058445_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059308_1060361_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060413_1060803_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060811_1061444_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061543_1062560_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063390_1064398_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064394_1066038_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066034_1066922_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067062_1067536_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067525_1068548_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068544_1069972_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010929632.1|1070909_1071926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1075679	1136706	4109988	transposase,holin,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1075679_1076816_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076812_1077886_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078043_1079480_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079570_1080212_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080547_1081564_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1081896_1084644_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1084710_1086132_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086395_1087112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087196_1087514_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087554_1087968_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087969_1088329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088371_1089916_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089999_1090830_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090864_1092019_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092061_1092934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093050_1095339_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096545_1097010_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097036_1097987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098354_1099131_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099175_1100033_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100054_1101071_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101205_1102246_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102440_1104522_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104757_1106251_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106481_1107276_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107496_1108855_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108851_1109694_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109712_1111599_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111540_1111792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111836_1112469_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112487_1113090_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113241_1114192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114772_1115480_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115838_1116825_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116964_1117978_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117974_1118925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119037_1119496_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119532_1120846_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120863_1121235_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121231_1122695_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122835_1123564_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123545_1126395_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126607_1127558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127725_1128550_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128549_1129428_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130332_1131448_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131476_1132271_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132267_1134133_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134211_1134844_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134840_1135143_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135185_1136706_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1289457	1354765	4109988	transposase,tRNA	Bacillus_virus(18.18%)	57	NA	NA
WP_003810552.1|1289457_1290192_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1290208_1292029_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1292099_1292825_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1292821_1293226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930272.1|1293377_1294007_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	27.1	6.6e-08
WP_010930273.1|1294059_1296774_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1296884_1297721_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1297775_1298564_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
WP_010930276.1|1298597_1300259_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_010930277.1|1300426_1301818_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1301955_1302615_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_023852880.1|1302650_1305476_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1309249_1310506_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1310618_1310945_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_010930279.1|1311237_1313199_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.5	4.2e-93
WP_010930280.1|1313198_1313807_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1313824_1316140_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1316142_1317357_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1317353_1318304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319072_1319711_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320600_1321047_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321128_1321830_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321830_1322598_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322594_1323833_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323832_1324759_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324861_1325977_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|1325992_1326943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1327041_1327992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328345_1328927_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328923_1329757_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329967_1331281_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331457_1332339_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332358_1333210_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333262_1334351_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334461_1335589_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335823_1336435_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336533_1337484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337705_1338083_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338230_1338728_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338724_1339252_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339385_1340201_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340213_1341395_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1341442_1342336_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342462_1342933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343058_1343886_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343914_1344691_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344687_1344963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344977_1345442_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345453_1346155_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346264_1346765_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346847_1348026_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349653_1349989_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350176_1351625_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351682_1352027_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352133_1352673_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352765_1353716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1353814_1354765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1382880	1449380	4109988	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1382880_1383831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383896_1384076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384192_1384948_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384934_1386080_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386987_1387938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1388125_1389328_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1389324_1390083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1390476_1391109_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1392064_1394665_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1394652_1398072_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1398079_1398985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1399123_1399702_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1399698_1400610_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1400623_1401304_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1401505_1403545_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1403563_1404550_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1404575_1405373_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1405369_1406563_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1406559_1407522_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1407539_1408580_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1408567_1409176_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1410764_1411760_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1411779_1412958_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1412968_1413886_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1413941_1414892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1414990_1415761_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1415757_1416438_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1416504_1417293_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1417539_1418556_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1418861_1420016_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1424521_1425004_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1425021_1425312_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1425438_1426149_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1426332_1426740_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1426752_1427172_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1427219_1427924_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1427989_1429411_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1429449_1430214_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1430257_1431043_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1431042_1431732_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1431734_1432868_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1432885_1433908_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1433977_1435624_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1435657_1437190_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1437268_1439089_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1439209_1440829_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1441007_1442450_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1442666_1443683_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1443729_1444518_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1444540_1444810_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1444826_1445561_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1445629_1445971_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1445981_1446482_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1446474_1447485_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1447487_1448060_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1448429_1449380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1477551	1516141	4109988	transposase,protease	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1477551_1478886_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478938_1481275_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481400_1481964_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481972_1483064_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483135_1483591_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483591_1484386_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484382_1485564_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485550_1486156_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486152_1486926_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486937_1487765_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487926_1490290_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490357_1491077_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491200_1491626_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491660_1492611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492728_1493655_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493720_1494878_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494858_1495326_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495473_1496424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1496440_1496875_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496864_1497215_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1497411_1498566_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498562_1499735_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499782_1500676_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500721_1501159_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501218_1501908_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501917_1502868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502966_1503917_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1504015_1504978_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1505204_1506359_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1506369_1509612_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1510633_1511278_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1511288_1512188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1512235_1513321_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1513317_1515012_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1515190_1516141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1598614	1666697	4109988	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1598614_1599103_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599220_1599799_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599904_1600273_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600371_1601322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601328_1602441_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603127_1604330_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604533_1607194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607206_1610611_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611278_1613504_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613550_1613877_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613927_1614536_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614634_1615585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615654_1616419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1616415_1616952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617118_1617970_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618029_1618656_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618652_1619603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619701_1620814_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620803_1621805_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621910_1623422_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1623418_1624723_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624834_1625395_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625662_1626217_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626672_1626888_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627142_1629740_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629736_1630924_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631579_1632194_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632282_1633404_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1633421_1634327_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635219_1636170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636351_1637104_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637172_1637832_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637828_1638557_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638569_1640849_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640873_1641077_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641118_1641751_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641886_1642804_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642800_1643514_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643751_1644522_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644526_1645126_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645370_1646861_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646919_1647204_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647769_1648696_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648832_1649573_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649739_1651116_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651297_1652203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653854_1655657_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655774_1656425_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656523_1657474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657495_1658716_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658901_1660314_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660377_1661445_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1661444_1662932_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662941_1663886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664045_1664744_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664821_1665727_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665746_1666697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1702646	1750468	4109988	transposase	Brazilian_cedratvirus(33.33%)	40	NA	NA
WP_005013747.1|1702646_1703597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703655_1704429_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1704421_1705978_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705974_1706925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708251_1708854_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709093_1709795_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709788_1710571_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710755_1711706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711804_1712542_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712731_1713490_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713536_1714526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714703_1715672_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717211_1718180_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718188_1719130_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719603_1720614_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720604_1722119_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722115_1723462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723464_1724499_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724548_1726174_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726726_1727677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727781_1728729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728782_1730597_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730589_1731264_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731393_1734468_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734481_1734781_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735095_1735719_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735962_1736832_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736809_1737754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737839_1738766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738878_1739658_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739648_1740845_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740875_1741826_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742047_1742737_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1742835_1743786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930500.1|1743850_1744606_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744657_1745650_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745659_1746613_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746728_1747691_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749092_1749521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749517_1750468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	1992049	2061700	4109988	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992049_1994707_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994784_1995987_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995983_1996496_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996618_1997056_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997332_1998283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998381_1999332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999495_2001391_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001504_2001672_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001735_2001972_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2002340_2003492_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005055_2006006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006457_2007459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007631_2008489_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008485_2009748_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009848_2010223_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2010295_2011483_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011567_2012338_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012451_2013216_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013166_2014468_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014464_2015271_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017015_2017987_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018143_2018656_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018814_2019789_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020789_2021584_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021609_2022416_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022526_2023117_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023127_2024306_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2024408_2024783_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025035_2026367_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2026433_2029664_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031154_2031901_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031985_2032447_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032484_2033543_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033505_2035335_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035374_2035947_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037371_2038193_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038511_2039834_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040192_2040828_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040787_2041738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042608_2043481_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043558_2044698_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045056_2046313_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046318_2046846_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046850_2047669_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047668_2048391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2048412_2048727_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048744_2049893_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049923_2050799_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050795_2052115_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052187_2053384_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053394_2054882_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057476_2058376_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058513_2059479_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059577_2060528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060749_2061700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2073196	2122592	4109988	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073196_2074147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075284_2075581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075755_2077108_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077250_2078267_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080246_2081260_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081346_2082252_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2082408_2082753_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082910_2083369_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083382_2085599_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085595_2086657_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086685_2087660_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087611_2088430_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2088442_2089051_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089225_2089621_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089639_2091079_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091107_2091455_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091473_2092424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093076_2094027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094110_2095928_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096001_2096649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096661_2097591_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097760_2098225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098472_2099153_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099201_2100893_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100908_2101460_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101456_2101828_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101940_2102777_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102787_2103312_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2103409_2103589_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103718_2104693_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104823_2105180_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105169_2106045_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106143_2107028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107049_2108345_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109293_2109944_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110031_2111552_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111809_2113675_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114720_2115671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115688_2115829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116643_2117003_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116990_2118427_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2118423_2119077_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119073_2120267_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120370_2121645_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121641_2122592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2133796	2174487	4109988	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133796_2134747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134845_2135796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135755_2136169_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136453_2136753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137162_2139445_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139910_2140105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2140130_2142161_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142180_2142393_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142670_2143210_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143323_2144619_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144695_2145853_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146036_2146936_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146954_2148259_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148224_2149331_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2149418_2149655_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149793_2150864_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150867_2152223_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2152249_2153407_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2153412_2154051_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2154052_2155348_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2155397_2156684_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156699_2157206_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157202_2158351_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158378_2158804_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159126_2162009_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162101_2162857_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163622_2164972_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165070_2166021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166119_2167070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167143_2167617_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167642_2168851_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168847_2169621_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169620_2170244_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2170409_2170670_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170973_2171555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171621_2171876_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171862_2174487_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2202270	2267818	4109988	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202270_2203221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2203421_2204231_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204355_2205306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205302_2206196_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206320_2206515_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206514_2206856_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206865_2208728_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208857_2209370_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209372_2209696_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209697_2210108_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210145_2211357_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211374_2211887_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212102_2212594_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212846_2214883_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214960_2216163_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216291_2216942_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218499_2219450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220020_2220233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220250_2220982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221016_2221658_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221650_2222319_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224531_2225308_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225329_2226487_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226483_2226915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226911_2227709_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227728_2228130_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228196_2229168_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229233_2230457_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230684_2231635_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231758_2234212_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2234400_2235705_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235809_2236463_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236465_2237776_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237954_2238533_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238644_2238845_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239190_2239757_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239840_2240044_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240350_2240671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240712_2240994_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241068_2242325_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242707_2243037_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244606_2245428_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2245427_2246567_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246573_2247470_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247484_2249392_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249751_2252364_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2252416_2254717_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254713_2255922_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256183_2256558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256554_2257505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257603_2259598_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259657_2260623_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260612_2263474_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263476_2263983_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264087_2265296_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265297_2266236_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2266397_2266871_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266867_2267818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2352946	2427134	4109988	transposase,protease	uncultured_Caudovirales_phage(10.0%)	58	NA	NA
WP_010931070.1|2352946_2353897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354198_2354675_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355298_2356936_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356966_2358280_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2358413_2358731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358831_2360154_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360150_2361101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2361630_2362653_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2362681_2363512_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2363528_2365226_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365290_2366367_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2366526_2367390_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2367420_2367990_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2368006_2368858_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2369915_2370797_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2370871_2371861_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2371923_2372874_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2372936_2373794_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2373853_2374342_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2375914_2377105_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377101_2378688_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2378706_2379774_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2379878_2381423_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2381842_2383417_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2383533_2384541_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2384537_2385377_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385381_2387019_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387015_2387966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2388108_2389383_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2389412_2389703_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2389775_2390789_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2390808_2392071_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392073_2392997_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2392993_2394487_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2394497_2395430_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2395611_2396937_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2396971_2398327_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398387_2399908_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400062_2400794_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_054604394.1|2400891_2402202_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402217_2403129_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403119_2403713_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2403774_2404161_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404172_2404643_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2404654_2405278_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405298_2408046_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2414524_2415475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930867.1|2415518_2416982_+	ribonuclease G	NA	NA	NA	NA	NA
WP_010930868.1|2417015_2417918_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_003813206.1|2417914_2418460_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930869.1|2418543_2420043_+	MFS transporter	NA	NA	NA	NA	NA
WP_003813209.1|2420015_2421791_-	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
WP_010926806.1|2421902_2422868_+	heptosyltransferase II	NA	NA	NA	NA	NA
WP_010930871.1|2422880_2423645_+	YdcF family protein	NA	NA	NA	NA	NA
WP_003813217.1|2423649_2423922_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_019247284.1|2424046_2425201_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_033446280.1|2425175_2425883_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010929956.1|2426183_2427134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2536672	2602393	4109988	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_005012067.1|2536672_2537623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538612_2539533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539552_2540140_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2540132_2541023_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2541019_2541781_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541786_2542671_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542693_2544487_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544617_2546105_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546142_2547201_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2547200_2547701_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547713_2548313_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548309_2548810_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548811_2550041_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550230_2550470_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550652_2551405_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2551406_2552342_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2552423_2553410_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2553409_2554468_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554524_2554707_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554758_2555352_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555460_2556060_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556056_2556767_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556768_2557596_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2559412_2560654_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560665_2561439_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561465_2562416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562514_2563297_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563385_2564612_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565337_2566723_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566741_2567347_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567343_2569200_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569196_2569997_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570011_2571205_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571272_2572247_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572369_2573593_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573703_2575908_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576202_2576862_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576869_2577076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2577414_2578170_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2578440_2578956_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579228_2579546_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579733_2579970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580260_2581616_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581662_2583003_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583104_2583737_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583736_2586106_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586138_2587098_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587084_2587771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587767_2588100_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588215_2589166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589264_2590215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590211_2592278_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592277_2592550_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593244_2593334_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593333_2595118_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595141_2597307_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597317_2597917_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600738_2601434_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2601442_2602393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2688510	2729179	4109988	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688510_2689461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689571_2689754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689853_2690450_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690633_2691725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692224_2692635_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692693_2693023_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693040_2695458_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695470_2696493_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696567_2696927_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696942_2697140_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697475_2698426_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698620_2699070_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699066_2700017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700127_2701576_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701690_2701936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702075_2703026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703270_2703984_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704106_2704334_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704628_2705267_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705375_2706410_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2706406_2707357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707772_2708297_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708300_2708570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708768_2709830_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709913_2711548_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711549_2712353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712381_2713341_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713344_2714859_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714895_2715900_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716331_2716802_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716837_2717449_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717479_2718103_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718183_2719716_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719750_2720968_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721035_2722067_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722063_2723233_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723226_2723907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724068_2724911_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725073_2726045_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726216_2727095_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727117_2728188_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728228_2729179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2784644	2857514	4109988	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784644_2785061_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785171_2785804_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785832_2786276_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786297_2787389_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787443_2788244_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788379_2789000_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789139_2789613_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790752_2791703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791699_2799361_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799601_2803648_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803960_2804542_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804538_2805837_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805916_2806945_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807205_2808156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808152_2809103_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809419_2810025_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810078_2811392_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811466_2811937_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811936_2812725_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812735_2814388_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814475_2815426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816587_2817094_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817090_2817855_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817870_2818155_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818219_2819209_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819380_2820310_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820281_2820968_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821001_2821547_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821591_2822857_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822853_2823756_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824937_2825882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825976_2827494_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827535_2829164_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829271_2830153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833265_2833640_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833664_2834003_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834046_2835681_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835719_2837066_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837173_2838595_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838664_2839249_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839351_2840302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840436_2841543_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841553_2842651_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842795_2844001_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844007_2844529_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844525_2845008_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845013_2845265_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845245_2845731_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845866_2849328_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849345_2850230_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850239_2850671_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850917_2851421_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851498_2852899_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852973_2853849_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853845_2854853_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855320_2855626_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855716_2856307_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856497_2857514_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2860657	2927468	4109988	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2860657_2861608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861706_2862657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862653_2863448_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863479_2864184_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864258_2865059_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865055_2865463_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865459_2866101_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866093_2868094_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869354_2870686_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870682_2871633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873339_2873606_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874313_2874652_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879205_2879808_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879904_2881194_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881251_2881983_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881979_2882783_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882779_2883868_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883864_2884794_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884942_2886088_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886109_2887060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887390_2891212_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891368_2892037_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892041_2893715_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893733_2895053_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895057_2897373_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2897428_2899597_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899593_2904774_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904872_2905187_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905414_2905660_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905754_2906273_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906372_2907578_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907693_2909091_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909207_2909786_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909858_2911250_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911417_2912368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912648_2913269_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913265_2913679_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913675_2914719_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914774_2914963_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914972_2915737_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915827_2916484_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916575_2917334_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917359_2918961_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919161_2920166_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920266_2920530_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920647_2921424_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922014_2922965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925348_2926461_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926517_2927468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	2957854	3001545	4109988	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2957854_2958805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958925_2959822_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962099_2964325_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964489_2965578_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965534_2966188_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966235_2967033_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967564_2968515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968595_2969744_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969800_2970751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970849_2971155_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971183_2971618_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971619_2972864_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972860_2973571_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973585_2974497_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974859_2975264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975260_2975719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975725_2976634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976630_2977497_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977483_2978311_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978321_2979449_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980526_2981765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981806_2983069_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983075_2983828_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983879_2984065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984340_2984805_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984836_2985496_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985640_2987749_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987745_2988696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988799_2989420_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989523_2990264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991398_2992523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992568_2992937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993178_2994129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995164_2995707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996092_2997043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997039_2997948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998074_2998911_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2999423_3000533_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000594_3001545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	3382540	3436281	4109988	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382540_3383491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383895_3384540_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384564_3385149_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385249_3385867_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385869_3387585_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387581_3387890_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387906_3388524_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388568_3388871_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388971_3389826_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390013_3390238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390407_3390680_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391097_3391505_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391874_3392669_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392769_3394005_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394073_3395090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395101_3396478_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396474_3397671_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397667_3399206_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399202_3400462_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402402_3403353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404119_3405214_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405206_3406541_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406494_3407178_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407203_3408367_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408363_3409365_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409364_3410237_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410233_3410983_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410979_3411771_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411767_3412907_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413182_3413968_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414001_3414784_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414787_3415177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416316_3417180_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417215_3418304_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418300_3419251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419604_3422583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423509_3424388_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426336_3427287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427283_3427751_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427793_3428564_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428584_3429385_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429395_3430805_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430899_3431685_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431924_3432941_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433048_3433441_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433578_3434259_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434263_3435235_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435330_3436281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	3442436	3501736	4109988	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3442436_3444200_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444311_3445190_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445302_3446118_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446121_3446373_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446457_3447474_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447804_3448026_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450386_3451304_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451801_3453010_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453089_3454661_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454778_3455714_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455902_3456847_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3457414_3463132_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463137_3464265_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464320_3464947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465218_3466235_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466330_3467041_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467037_3468027_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468122_3469754_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469756_3470494_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470649_3471522_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471871_3473011_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473007_3473667_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473738_3474371_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474400_3474919_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474929_3476039_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476085_3476940_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476941_3477844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479066_3480017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481773_3482763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482938_3483727_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483723_3484755_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484773_3485337_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485392_3486913_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487176_3487881_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487888_3488617_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488731_3489106_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489148_3490438_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490434_3491604_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491600_3492440_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492499_3493435_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493447_3494398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494496_3495459_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495490_3495850_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495974_3496877_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496878_3498651_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498685_3499462_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500785_3501736_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	3516674	3574747	4109988	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516674_3517625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517753_3518887_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518930_3519836_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519838_3521539_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521535_3522456_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522463_3523441_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523499_3524534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526508_3526745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526871_3527735_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527823_3528645_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528724_3529462_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529458_3530451_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530603_3531227_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531271_3532420_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534743_3535694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536034_3536985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537083_3538034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538330_3538828_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538870_3540646_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540653_3541520_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541526_3542261_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543430_3544225_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544514_3545105_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545138_3546467_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546541_3547687_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547798_3548797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548759_3549194_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550710_3551595_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551591_3552797_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552793_3553654_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553766_3555557_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555597_3556242_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556263_3556572_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556737_3558024_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559457_3560408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562359_3563574_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563679_3564669_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564665_3565274_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565286_3565916_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565912_3566533_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566564_3567356_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568207_3568663_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568681_3569608_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569661_3570948_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571878_3572751_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572747_3573698_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573796_3574747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011442	Bordetella pertussis strain B3405 chromosome, complete genome	4109988	4006958	4071870	4109988	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006958_4007444_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007532_4007670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007662_4008643_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008909_4009719_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009758_4010439_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010432_4010891_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010902_4011265_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011347_4012031_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012086_4012395_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012413_4012728_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012724_4015199_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015206_4016598_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016594_4016780_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016758_4017460_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017456_4018278_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018258_4019383_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019375_4020395_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020600_4021491_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021735_4022527_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022609_4022984_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022961_4024371_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024363_4025746_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026080_4027685_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027762_4028734_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028744_4029671_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030061_4031012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031181_4032408_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032607_4033474_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033466_4034429_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034529_4035480_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035578_4036529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036627_4037578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037574_4039068_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039064_4042172_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042168_4045237_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045233_4046484_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046664_4047417_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047458_4048103_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048111_4049092_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049191_4049935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050017_4050365_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050462_4051305_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051349_4052237_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052263_4052452_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052549_4054007_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053993_4055520_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055538_4056006_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056005_4057028_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057148_4057889_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057943_4059044_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059045_4060236_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060355_4061372_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061690_4062362_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062358_4063267_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063478_4064126_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067986_4069054_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069064_4069874_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069963_4070737_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|4070919_4071870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
