The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	27282	70036	4105363	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	77634	136108	4105363	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	164894	225405	4105363	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	233337	286925	4105363	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	468505	586400	4105363	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|468505_469456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470178_471453_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471539_472622_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472632_473445_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473481_473808_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473812_474373_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474613_475606_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475624_476620_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476635_478012_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|478004_480386_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480402_480792_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480918_481149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481253_482204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482302_483253_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483249_484122_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485052_486339_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486392_487319_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487337_487793_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488644_489436_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489467_490088_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490084_490714_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490726_491335_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491331_492321_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492426_493641_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495592_496543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|496641_497592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499025_500312_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|500477_500786_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|500807_501452_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|501492_503283_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503395_504256_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|504252_505458_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505454_506339_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507855_508290_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508252_509251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509362_510508_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510582_511911_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511944_512535_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512824_513619_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514788_515523_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515529_516396_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516403_518179_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518221_518719_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519015_519966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520064_521015_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521355_522306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524629_525778_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|525822_526446_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526598_527591_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527587_528325_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|528404_529226_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529314_530178_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530304_530541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532515_533550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|533608_534586_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534593_535514_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535510_537211_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537213_538119_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538162_539296_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539424_540375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540473_542543_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542585_544688_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544994_546071_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546146_547031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547213_547636_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547645_549046_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549088_549994_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550092_551634_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551668_552208_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552220_552691_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552828_553071_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553187_554069_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554141_554462_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|555313_556264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557587_558364_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558398_560171_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560172_561075_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561199_561559_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561590_562553_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562651_563602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563614_564550_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564609_565449_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565445_566615_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566611_567901_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567943_568318_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568432_569161_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569168_569873_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570136_571657_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571712_572276_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572294_573326_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573322_574111_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574286_575276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577032_577983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579205_580108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580109_580964_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581010_582120_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582130_582649_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582678_583311_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583382_584042_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584038_585178_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585527_586400_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	590814	654648	4105363	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|590814_591831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592102_592729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592784_593912_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593917_599635_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600203_601148_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601336_602272_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602389_603961_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604040_605249_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605746_606664_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609024_609246_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609576_610593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610677_610929_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610932_611748_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611860_612739_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612850_614614_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614729_616070_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617139_618564_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618563_619265_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620769_621720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621815_622787_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622791_623472_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623609_624002_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624109_625126_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625365_626151_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626245_627655_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627665_628466_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628486_629257_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629299_629767_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629763_630714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632662_633541_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634467_637446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637799_638750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638746_639835_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639870_640734_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641873_642263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642266_643049_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643082_643868_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644143_645283_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645279_646071_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646067_646817_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646813_647686_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647685_648687_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648683_649847_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649872_650556_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650509_651844_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651836_652931_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653697_654648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	673559	750868	4105363	tRNA,protease,transposase,integrase	Bacillus_phage(20.0%)	58	720696:720714	740584:740602
WP_023995489.1|673559_674510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674608_676084_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677671_678559_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678561_679503_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679548_681114_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682891_684217_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684399_685857_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685820_686318_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686348_687320_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687372_687804_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687933_688602_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689330_690434_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690539_691814_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691825_692851_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692852_694223_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694223_695360_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695406_697332_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697328_698450_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698446_699601_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699597_700728_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700735_702301_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702307_703690_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703968_704580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704671_706087_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706104_706815_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706811_708134_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708213_710175_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710300_711614_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711722_713021_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713203_714112_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714121_714331_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714342_716022_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716123_717077_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717167_717995_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717993_719880_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719876_720476_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720524_721424_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720696:720714	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721632_722583_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722705_723320_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723448_724045_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724041_724824_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724896_725988_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726267_727395_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727736_728783_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729293_732050_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732051_735003_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735018_736230_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736226_736427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736413_737364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737380_737875_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737878_738136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738679_739591_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739672_739957_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740740_741691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740584:740602	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742109_744674_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744718_746572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746904_748476_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749917_750868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	996803	1099196	4105363	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996803_997919_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998019_998838_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998935_999547_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999706_1001083_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001145_1001604_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001688_1002384_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002445_1002727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003289_1004042_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004086_1005163_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005159_1006110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006212_1006875_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006969_1007140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007492_1008494_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008496_1009693_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009713_1010517_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010597_1010894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010924_1011488_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011528_1012386_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012393_1013143_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013164_1014037_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014065_1014845_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014878_1015676_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018330_1018723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018716_1019577_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019580_1020543_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021319_1022009_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022869_1023820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024169_1025039_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025109_1025805_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025794_1026304_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026300_1027521_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027468_1028371_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|1029257_1030544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030582_1031956_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031994_1032696_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032994_1033984_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034084_1034546_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034561_1035110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035251_1036727_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036832_1037924_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037927_1038710_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038719_1039508_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040633_1041068_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041064_1042075_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042118_1043045_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043331_1043700_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043916_1044867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044911_1047338_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047386_1048079_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048151_1049351_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049368_1050274_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050389_1051319_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051344_1052691_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052703_1053468_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053481_1054264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054456_1055407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055468_1056578_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057090_1057927_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058053_1058962_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058958_1059909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060294_1060837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061872_1062823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063064_1063433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063478_1064603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065737_1066478_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066581_1067202_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067305_1068256_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068252_1070361_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070505_1071165_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071196_1071661_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071936_1072122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072173_1072926_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072932_1074195_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074236_1075475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076552_1077680_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077690_1078518_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078504_1079371_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080737_1081142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081233_1082184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082553_1083465_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083479_1084190_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084186_1085431_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085432_1085867_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085895_1086201_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086299_1087250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087306_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088535_1089486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090017_1090815_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090862_1091516_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091472_1092561_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092725_1094951_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097228_1098125_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098245_1099196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1129582	1200553	4105363	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129582_1130533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130589_1131702_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134085_1135036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135626_1136403_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136520_1136784_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136884_1137889_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138089_1139691_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139716_1140475_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140566_1141223_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141313_1142078_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142087_1142276_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142331_1143375_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143371_1143785_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143781_1144402_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144682_1145633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145800_1147192_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147264_1147843_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147959_1149357_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149472_1150678_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150777_1151296_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151390_1151636_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151863_1152178_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152276_1157457_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157453_1159622_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159677_1161993_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161997_1163317_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163335_1165009_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165013_1165682_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165838_1169660_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169990_1170941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170962_1172108_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172256_1173186_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173182_1174271_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174267_1175071_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175067_1175799_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175856_1177146_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177242_1177845_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182398_1182737_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183444_1183711_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185417_1186368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186364_1187696_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188956_1190957_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190949_1191591_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191587_1191995_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191991_1192792_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192866_1193571_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193602_1194397_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194393_1195344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195442_1196393_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196491_1196926_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197008_1199345_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199536_1200553_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1300774	1357985	4105363	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1300774_1301725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305471_1306083_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306305_1307766_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307862_1309455_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309808_1310066_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310067_1311408_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311503_1312193_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312205_1313636_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315360_1316182_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316192_1317764_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317792_1318770_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318796_1319600_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319596_1320391_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320398_1321634_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321647_1322061_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322810_1323761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324382_1326110_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326221_1327580_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327872_1328823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328863_1329934_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329956_1330835_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1331006_1331978_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332140_1332983_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333144_1333825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1333818_1334988_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1334984_1336016_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1336083_1337301_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337335_1338868_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338948_1339572_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339602_1340214_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340249_1340720_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341151_1342156_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342192_1343707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343710_1344670_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344698_1345502_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345503_1347138_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347221_1348283_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348481_1348751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348754_1349279_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349694_1350645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350641_1351676_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351784_1352423_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352717_1352945_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353067_1353781_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354025_1354976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1355115_1355361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355475_1356924_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357034_1357985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1448218	1500371	4105363	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1448218_1449169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449335_1449689_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449701_1450064_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450105_1450531_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450733_1451990_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452188_1453169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453318_1454560_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454658_1455609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455617_1456313_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459134_1459734_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459744_1461910_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461933_1463718_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463717_1463807_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464501_1464774_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464773_1466840_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466836_1467787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467885_1468836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468951_1469284_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469280_1469967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469953_1470913_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470945_1473315_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473314_1473947_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474048_1475389_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475435_1476791_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477081_1477318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477505_1477823_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478095_1478611_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478881_1479637_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479975_1480182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480189_1480849_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481143_1483348_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483458_1484682_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484804_1485779_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485846_1487040_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487054_1487855_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487851_1489708_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489704_1490310_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490328_1491714_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492439_1493666_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493754_1494537_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494635_1495586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495612_1496386_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496397_1497639_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499420_1500371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1544296	1612383	4105363	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1544296_1544785_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544902_1545481_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545586_1545955_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546053_1547004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547010_1548123_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548809_1550012_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550215_1552876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552888_1556293_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556960_1559186_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559232_1559559_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559609_1560218_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560316_1561267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561336_1562101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562097_1562634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562800_1563652_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563711_1564338_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564334_1565285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565383_1566496_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566485_1567487_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567592_1569104_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569100_1570405_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570516_1571077_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571344_1571899_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572354_1572570_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572824_1575422_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575418_1576606_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577265_1577880_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577968_1579090_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579107_1580013_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580905_1581856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582037_1582790_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582858_1583518_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583514_1584243_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584255_1586535_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586559_1586763_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586804_1587437_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587572_1588490_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588486_1589200_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589437_1590208_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590212_1590812_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591056_1592547_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592605_1592890_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593455_1594382_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594518_1595259_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595425_1596802_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596983_1597889_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599540_1601343_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601460_1602111_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602209_1603160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603181_1604402_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604587_1606000_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606063_1607131_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607130_1608618_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608627_1609572_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609731_1610430_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610507_1611413_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611432_1612383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1648332	1703923	4105363	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648332_1649283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649341_1650115_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650107_1651664_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651660_1652611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653937_1654540_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654779_1655481_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655474_1656257_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656441_1657392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657490_1658228_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658417_1659176_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659222_1660212_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660389_1661358_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662897_1663866_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663874_1664816_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665289_1666300_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666290_1667805_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667801_1669148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1669150_1670185_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670234_1671860_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672412_1673363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673467_1674415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674468_1676283_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676275_1676950_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677079_1680154_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680167_1680467_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680781_1681405_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1681648_1682518_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682495_1683440_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683525_1684452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684564_1685344_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685334_1686531_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686561_1687512_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687733_1688423_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688487_1689243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689294_1690287_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690296_1691250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691365_1692328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693729_1694158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694154_1695105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1695398_1696121_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696559_1697747_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1697750_1698101_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699850_1700822_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700835_1701549_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701553_1702471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702577_1702874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1702972_1703923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	1936687	2006339	4105363	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936687_1939345_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939422_1940625_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940621_1941134_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941256_1941694_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941970_1942921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943019_1943970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1944133_1946029_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1946142_1946310_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946373_1946610_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1946978_1948130_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949693_1950644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951095_1952097_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952269_1953127_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953123_1954386_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954486_1954861_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1954933_1956121_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956205_1956976_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957089_1957854_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957804_1959106_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1959102_1959909_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1961653_1962625_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962781_1963294_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963452_1964427_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965427_1966222_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966247_1967054_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967164_1967755_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967765_1968944_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969046_1969421_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969673_1971005_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971071_1974302_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975792_1976539_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976623_1977085_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977122_1978181_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978143_1979973_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980012_1980585_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982009_1982831_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983149_1984472_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984831_1985467_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985426_1986377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987247_1988120_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988197_1989337_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989695_1990952_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990957_1991485_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991489_1992308_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992307_1993030_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993051_1993366_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993383_1994532_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994562_1995438_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995434_1996754_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996826_1998023_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998033_1999521_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002115_2003015_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003152_2004118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004216_2005167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005388_2006339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2017835	2067231	4105363	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2017835_2018786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019923_2020220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020394_2021747_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021889_2022906_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2024885_2025899_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2025985_2026891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2027047_2027392_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2027549_2028008_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2028021_2030238_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2030234_2031296_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2031324_2032299_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2032250_2033069_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2033081_2033690_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2033864_2034260_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2034278_2035718_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2035746_2036094_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2036112_2037063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037715_2038666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038749_2040567_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040640_2041288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041300_2042230_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042399_2042864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043111_2043792_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043840_2045532_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045547_2046099_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046095_2046467_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046579_2047416_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047426_2047951_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048048_2048228_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048357_2049332_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049462_2049819_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049808_2050684_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050782_2051667_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051688_2052984_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053932_2054583_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054670_2056191_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056448_2058314_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059359_2060310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060327_2060468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061282_2061642_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061629_2063066_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063062_2063716_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063712_2064906_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065009_2066284_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066280_2067231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2078435	2119126	4105363	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2078435_2079386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079484_2080435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080394_2080808_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081092_2081392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081801_2084084_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2084549_2084744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054604401.1|2084769_2086800_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086819_2087032_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087309_2087849_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087962_2089258_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089334_2090492_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090675_2091575_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091593_2092898_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092863_2093970_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2094057_2094294_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094432_2095503_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095506_2096862_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096888_2098046_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2098051_2098690_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098691_2099987_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2100036_2101323_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101338_2101845_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101841_2102990_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2103017_2103443_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103765_2106648_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106740_2107496_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108261_2109611_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109709_2110660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110758_2111709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111782_2112256_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112281_2113490_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113486_2114260_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114259_2114883_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115048_2115309_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115612_2116194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116260_2116515_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116501_2119126_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2146909	2212459	4105363	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146909_2147860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2148060_2148870_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2148994_2149945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149941_2150835_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150959_2151154_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151153_2151495_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151504_2153367_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153496_2154009_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2154011_2154335_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154336_2154747_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154784_2155996_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2156013_2156526_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156741_2157233_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157485_2159522_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159599_2160802_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160930_2161581_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163139_2164090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164660_2164873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164890_2165622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165656_2166298_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166290_2166959_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169171_2169948_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169969_2171127_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171123_2171555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171551_2172349_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172368_2172770_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172836_2173808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173873_2175097_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175324_2176275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176398_2178852_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179040_2180345_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180449_2181103_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181105_2182416_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182594_2183173_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183284_2183485_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183830_2184397_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184480_2184684_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184990_2185311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185352_2185634_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185708_2186965_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187347_2187677_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189247_2190069_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190068_2191208_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191214_2192111_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192125_2194033_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194392_2197005_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197057_2199358_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199354_2200563_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200824_2201199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201195_2202146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202244_2204239_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204298_2205264_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205253_2208115_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208117_2208624_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208728_2209937_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209938_2210877_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211038_2211512_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211508_2212459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2506106	2564350	4105363	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506106_2507057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507536_2508193_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508207_2509875_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509877_2510507_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510718_2511813_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511957_2512770_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512773_2514357_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514527_2515658_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515844_2516921_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517002_2517653_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517667_2519071_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519354_2520173_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520169_2520874_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521773_2522889_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522922_2523297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523319_2524477_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524489_2524723_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525357_2528327_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528341_2528551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528702_2529332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529328_2531386_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531442_2532123_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532119_2532680_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532686_2533784_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533936_2534530_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534526_2535819_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535832_2536375_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536384_2537221_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537254_2538316_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538357_2539410_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539425_2539728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539869_2540820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2540998_2542693_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542689_2543775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543822_2544722_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544732_2545377_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546398_2549641_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549651_2550806_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551032_2551995_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552093_2553044_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553142_2554093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554102_2554792_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554851_2555289_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555334_2556228_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556275_2557448_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557444_2558599_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558795_2559146_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559135_2559570_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559586_2560537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560684_2561152_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561132_2562290_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562355_2563282_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563399_2564350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2606630	2673130	4105363	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606630_2607581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607950_2608523_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608525_2609536_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609528_2610029_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610039_2610381_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610449_2611184_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611200_2611470_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611492_2612281_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612327_2613344_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613560_2615003_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615181_2616801_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616921_2618742_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618820_2620353_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620386_2622033_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622102_2623125_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623142_2624276_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624278_2624968_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624967_2625753_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625796_2626561_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626599_2628021_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628086_2628791_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628838_2629258_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629270_2629678_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629861_2630572_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630698_2630989_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2631006_2631489_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635994_2637149_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637454_2638471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638717_2639506_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639572_2640253_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640249_2641020_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641118_2642069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642124_2643042_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643052_2644231_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644250_2645246_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646834_2647443_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647430_2648471_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648488_2649451_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649447_2650641_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650637_2651435_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651460_2652447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652465_2654505_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654706_2655387_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655400_2656312_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656308_2656887_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657025_2657931_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657938_2661358_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661345_2663946_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664901_2665534_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665927_2666686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666682_2667885_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668072_2669023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669930_2671076_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671062_2671818_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671934_2672114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672179_2673130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2835695	2901280	4105363	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2835695_2836646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836744_2837695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2837897_2838887_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838970_2839324_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839401_2840010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841683_2842262_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842286_2843240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843279_2844197_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844318_2845245_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845252_2845999_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846325_2847267_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847493_2849191_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849625_2851047_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851200_2851980_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852104_2852983_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853088_2854213_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2854258_2855221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2855213_2856068_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856175_2856586_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856582_2857533_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857631_2858513_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858590_2859970_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860008_2860854_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860869_2861184_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861216_2861753_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861925_2862501_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862603_2863341_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863408_2865046_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865153_2865909_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865896_2866859_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866966_2867761_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867822_2869898_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870062_2872438_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872518_2873874_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875352_2876075_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876129_2877113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877242_2878193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878189_2879092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879179_2879938_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879950_2881042_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881139_2882567_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882796_2884011_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884056_2886927_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889337_2889826_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889951_2892648_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892802_2895085_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895250_2895883_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895981_2896932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896978_2897533_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897600_2898446_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898515_2899484_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899483_2901280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2918850	2979795	4105363	tRNA,holin,transposase	Catovirus(22.22%)	51	NA	NA
WP_010930190.1|2918850_2920371_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920413_2920716_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920712_2921345_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921423_2923289_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923285_2924080_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924108_2925224_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926128_2927007_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927006_2927831_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927998_2928949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929161_2932011_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931992_2932721_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932861_2934325_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934321_2934693_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934710_2936024_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936060_2936519_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936631_2937582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937578_2938592_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938731_2939718_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940076_2940784_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941364_2942315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942466_2943069_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943087_2943720_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943764_2944016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943957_2945844_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945862_2946705_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946701_2948060_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948280_2949075_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949305_2950799_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951034_2953116_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953310_2954351_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954485_2955502_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955523_2956381_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956425_2957202_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_158446939.1|2957414_2957552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2957569_2958520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2958618_2959569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959595_2960060_-	barstar family protein	NA	NA	NA	NA	NA
WP_010930165.1|2963672_2964545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964587_2965742_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965776_2966607_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966690_2968235_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968277_2968637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968638_2969052_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969092_2969410_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969494_2970211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970474_2971896_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971962_2974710_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975042_2976059_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976395_2977037_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977127_2978564_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978721_2979795_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 23
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	2984681	3057196	4105363	tRNA,transposase	Pseudomonas_phage(14.29%)	59	NA	NA
WP_010931363.1|2984681_2985698_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986635_2988063_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988059_2989082_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989071_2989545_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989685_2990573_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990569_2992213_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992209_2993217_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994047_2995064_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995163_2995796_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995804_2996194_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996246_2997299_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998162_2999869_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999942_3000443_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000457_3002515_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002541_3002835_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002936_3003884_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003896_3004772_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004892_3005453_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005487_3005811_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006246_3006984_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007282_3008233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3008476_3008740_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008813_3009095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3009111_3009972_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009968_3010304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3010357_3011008_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012688_3013633_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013678_3013996_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013998_3014937_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3015114_3015600_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3015618_3016167_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3016198_3016351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3017680_3018322_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3018476_3020825_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020821_3021760_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021785_3022976_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022972_3023746_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023775_3024969_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3025086_3026097_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3026114_3028151_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3028345_3029086_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3029184_3030135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030177_3031353_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031574_3033365_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033377_3035039_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035051_3037757_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038049_3039804_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039800_3040427_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040423_3041275_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3041404_3043465_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043651_3044266_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044411_3044663_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930121.1|3046109_3049289_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050096_3051014_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051065_3051797_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051856_3052429_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053937_3054954_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055091_3056141_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056245_3057196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	3076596	3141536	4105363	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3076596_3077547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077645_3078230_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078264_3079254_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079250_3080192_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080188_3081409_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081451_3081766_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081957_3082317_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082318_3084034_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084221_3084893_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084907_3086236_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086232_3087132_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087218_3088304_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088296_3089427_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089429_3092111_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092481_3093063_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093188_3093914_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093910_3094588_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094803_3095985_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096757_3096940_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096969_3097920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098049_3098442_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098718_3099630_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099754_3100729_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100725_3101676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101774_3102860_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102957_3103368_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103983_3105897_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3106032_3108645_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108646_3109381_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109544_3110726_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110722_3110935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110931_3111912_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111957_3112785_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112934_3114749_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114803_3115187_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3115183_3116134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116246_3116498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3116691_3116907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3117003_3118122_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118241_3118454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118613_3118835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118887_3119838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3121014_3122385_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122417_3123209_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123221_3124277_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3124302_3125178_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3125283_3125532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125566_3127021_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3127017_3127539_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127567_3128920_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129143_3132032_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134176_3135478_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3135492_3136209_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136490_3137171_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3137698_3138358_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138756_3140589_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140585_3141536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	3233159	3302162	4105363	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3233159_3234110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234106_3235126_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235135_3237844_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237991_3238648_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238746_3239697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239844_3240738_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240937_3242632_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242666_3243593_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243661_3244759_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244777_3245641_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245652_3246435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246431_3247550_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247546_3249079_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249119_3250127_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250271_3250994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251009_3252032_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252348_3253083_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253167_3254913_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254909_3255662_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255706_3256663_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256751_3257318_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257325_3258186_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258215_3258944_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258975_3259659_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260496_3261411_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261475_3262384_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262474_3263899_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263900_3265223_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265219_3267358_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267435_3272556_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272656_3272965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273034_3273592_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273607_3275089_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275143_3276997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277259_3278597_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278631_3280629_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280646_3282695_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282825_3283692_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283960_3284926_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285040_3286189_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286613_3286925_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286958_3287219_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287368_3288502_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288572_3289709_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289874_3290669_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290731_3291175_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291290_3292241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292363_3292771_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292843_3295039_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295260_3296211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296170_3296695_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296826_3297798_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297917_3300362_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300377_3300968_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301211_3302162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	3317608	3417721	4105363	transposase,protease,tail,terminase,tRNA	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3317608_3318559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319290_3319668_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319652_3320354_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320497_3321190_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321189_3322293_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322402_3324775_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324771_3326331_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326355_3327153_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327184_3328330_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328434_3329877_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329879_3331109_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333246_3334197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335326_3335884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335859_3336210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336378_3337173_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337169_3338219_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338218_3338908_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338994_3339492_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339523_3340840_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340856_3341831_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341867_3342326_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342325_3343006_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3343008_3343437_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343489_3345220_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345285_3345858_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345838_3346525_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346880_3347552_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347880_3348102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348101_3348383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348379_3348895_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348894_3349446_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349424_3349667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349671_3350484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350483_3350747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350787_3350985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350965_3351382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351386_3355343_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355335_3355725_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355721_3356255_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356322_3356682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356691_3359304_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359329_3359620_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359637_3359967_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359976_3360495_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360749_3361250_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361257_3361680_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361676_3362075_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362071_3362467_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362466_3362655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362668_3363151_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363213_3363465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364139_3365090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365518_3366121_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366243_3366486_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366491_3367547_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367575_3368994_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368996_3370274_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370260_3370746_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371385_3372336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3372592_3373282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373274_3373526_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374080_3374692_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374763_3374970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375221_3376172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376270_3377344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377511_3378306_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378345_3378870_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378862_3380605_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380814_3381573_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381575_3382283_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382299_3383181_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383191_3383950_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383918_3384674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384743_3386162_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386183_3386834_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386967_3387303_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387391_3388342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388418_3390239_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390243_3391317_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391439_3392408_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392481_3393393_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393411_3393984_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394064_3394613_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394612_3396202_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396271_3396511_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396551_3397577_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397642_3398824_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398920_3399373_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399382_3400723_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3401039_3402077_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402458_3402818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402901_3403843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403917_3404868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405161_3406256_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406346_3407219_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407240_3408080_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408155_3409673_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409769_3410870_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410886_3411309_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411331_3411544_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411590_3412511_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412693_3413443_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413445_3413775_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3414062_3415415_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415426_3415810_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415871_3416672_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416770_3417721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011441	Bordetella pertussis strain B1865 chromosome, complete genome	4105363	4004427	4069342	4105363	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004427_4004913_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005001_4005139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005131_4006112_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006378_4007188_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007227_4007908_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007901_4008360_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008371_4008734_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008816_4009500_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009555_4009864_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009882_4010197_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010193_4012668_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_054604402.1|4012675_4014070_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014066_4014252_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014230_4014932_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014928_4015750_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015730_4016855_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016847_4017867_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018072_4018963_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019207_4019999_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020081_4020456_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020433_4021843_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021835_4023218_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023552_4025157_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025234_4026206_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026216_4027143_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027533_4028484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028653_4029880_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030079_4030946_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030938_4031901_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032001_4032952_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033050_4034001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034099_4035050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035046_4036540_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036536_4039644_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039640_4042709_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042705_4043956_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044136_4044889_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044930_4045575_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045583_4046564_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046663_4047407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047489_4047837_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047934_4048777_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048821_4049709_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049735_4049924_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050021_4051479_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051465_4052992_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053010_4053478_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053477_4054500_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054620_4055361_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055415_4056516_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056517_4057708_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057827_4058844_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059162_4059834_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059830_4060739_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060950_4061598_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065458_4066526_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066536_4067346_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067435_4068209_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068391_4069342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
