The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	27282	70036	4101147	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	77634	136108	4101147	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	307899	369090	4101147	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|307899_308850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|309346_310216_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|310212_311034_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|311233_311725_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|311743_312817_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|312863_313967_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|314042_314663_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|314683_315193_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|315247_315499_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|315562_316696_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|316703_317090_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|317086_319606_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|320034_320373_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|320369_320876_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|320937_321738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|321848_322790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|322883_324419_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|326098_327949_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|327952_328786_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|328785_329727_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|329978_330950_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|331091_333380_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|333686_334595_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|334649_335615_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|335689_337351_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|337422_338133_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|338099_338264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|338281_339232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|339930_340314_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|340371_340974_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|340991_341393_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|341526_342420_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|342416_342998_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|343792_344527_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|344567_345617_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|345764_346343_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|346729_347707_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|347800_352195_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|352395_353244_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|353402_354215_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|354270_355221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|355319_356120_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|356181_356565_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|356576_358010_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|358216_358546_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|358548_359298_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|359480_360401_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|360447_360660_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|360682_361105_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|361121_362222_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|362318_363836_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|363911_364751_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|364772_365654_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|365735_366830_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|367123_368074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|368148_369090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	374414	420605	4101147	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|374414_375440_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|375480_375720_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|375789_377379_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|377378_377927_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|378007_378580_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|378598_379510_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|379583_380552_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|380674_381748_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|381752_383573_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|383649_384600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|384688_385024_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|385157_385808_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|385829_387248_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|387317_388073_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|388041_388800_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|388810_389692_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|389708_390416_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|390418_391177_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|391386_393129_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|393121_393646_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|393685_394480_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|394647_395721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|395819_396770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|397021_397228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|397299_397911_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|398465_398717_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|398709_399399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|399416_399638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|399655_400606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|401245_401731_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|401717_402995_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|402997_404416_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|404444_405500_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|405505_405748_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|405870_406473_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|406901_407852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|408526_408778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|408840_409323_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|409336_409525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|409524_409920_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|409916_410315_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|410311_410734_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|410741_411242_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|411496_412015_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|412024_412354_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|412371_412662_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|412687_415300_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|415309_415669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|415736_416270_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|416266_416656_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|416648_420605_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 5
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	426771	480701	4101147	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|426771_428502_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|428554_428983_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|428985_429666_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|429665_430124_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|430160_431135_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|431151_432468_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|432499_432997_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|433083_433773_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|433772_434822_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|434818_435613_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|435781_436132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|436107_436665_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_057045090.1|437794_438745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|440882_442112_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|442114_443557_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|443661_444807_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|444838_445636_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|445660_447220_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|447216_449589_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|449698_450802_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|450801_451494_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|451637_452339_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|452323_452701_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|453432_454383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|454542_455415_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|455755_455974_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|456013_457393_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|457434_458832_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|458871_460524_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|460527_461412_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|461411_462353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|462431_464051_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|464217_465033_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|465100_465670_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|465670_466621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|467275_468373_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|468406_469672_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|469829_470780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|471023_471614_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|471629_474074_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|474193_475165_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|475296_475821_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|475780_476731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|476952_479148_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|479220_479649_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|479750_480701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	571579	620843	4101147	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|571579_572530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|572547_573102_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|573103_573538_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|573534_573969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|573952_574756_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|574772_575588_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|575584_576400_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|576546_577248_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|577275_579234_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|579316_580267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|580487_581156_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|581279_582386_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|582398_585512_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|585508_587002_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|587016_587688_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|587731_588226_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|588366_589014_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|589117_591166_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|591162_593175_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|593200_594535_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|594643_595636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|595702_597787_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|597811_598783_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|598911_599943_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|599946_601098_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|601268_602192_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|602269_603094_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|603290_604307_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|604503_605487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|607085_608474_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|608504_609494_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|609604_610837_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|611118_611919_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|611941_614173_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|614960_615407_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|615428_616175_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|616318_617296_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|617929_618541_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|618534_619752_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|619892_620843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	630455	695395	4101147	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|630455_631406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|631402_633235_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|633633_634293_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|634386_634533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|634641_634809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|634820_635501_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|635782_636499_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|636513_637815_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|639959_642848_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|643071_644424_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|644452_644974_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|644970_646425_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|646459_646708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|646813_647689_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|647714_648770_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|648782_649574_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|649606_650977_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|652153_653104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|653156_653378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|653537_653750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|653869_654988_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|655493_655745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|655857_656808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|656804_657188_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|657242_659057_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|659206_660034_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|660079_661060_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|661056_661269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|661265_662447_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|662610_663345_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|663346_665959_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|666094_668008_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|668623_669034_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|669131_670217_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|670315_671266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|671262_672237_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|672361_673273_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|673549_673942_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|674071_675022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|675051_675234_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|676006_677188_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|677403_678081_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|678077_678803_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|678928_679510_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|679880_682562_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|682561_683695_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|683687_684773_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|684859_685759_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|685755_687084_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|687098_687770_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|687957_689673_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|689674_690034_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|690225_690540_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|690582_691803_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|691799_692741_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|692737_693727_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|693761_694346_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|694444_695395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	714795	777946	4101147	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|714795_715746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|715850_716900_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|717037_718054_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|719562_720135_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|720194_720926_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|720977_721895_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|722702_725882_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|725878_727261_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|727330_727582_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|727727_728342_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|728528_730643_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|730718_731570_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|731566_732193_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|732189_733944_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|734236_736942_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|736954_738616_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|738628_740419_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|740640_741816_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|741858_742809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|742907_743648_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|743842_745879_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|745896_746907_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|747024_748218_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|748247_749021_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|749017_750208_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|750233_751172_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|751168_753517_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|753671_754313_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|754416_755550_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|755642_755795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|755826_756375_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|756393_756879_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|757056_757995_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|757997_758315_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|758360_759305_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|760985_761636_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|761689_762025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|762021_762882_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|762898_763180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|763253_763517_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|763760_764711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|765009_765747_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|766182_766506_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|766540_767101_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|767221_768097_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|768109_769057_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|769158_769452_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|769478_771536_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|771550_772051_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|772124_773831_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|774694_775747_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|775799_776189_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|776197_776830_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|776929_777946_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	783930	843993	4101147	transposase,tRNA,holin,protease	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_015041211.1|783930_785358_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|786295_787312_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|787644_788580_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|788629_790510_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|790576_790921_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|791064_792201_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|792197_793271_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|793428_794865_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|794955_795597_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|795933_796950_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023996990.1|798890_799841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|801145_802567_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|802830_803547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|803631_803949_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|803989_804403_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|804404_804764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|804806_806351_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|806434_807265_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|807299_808454_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|808496_809369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054604373.1|809485_811774_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|812980_813445_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|813471_814422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|814439_814577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|814789_815566_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|815610_816468_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|816489_817506_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|817640_818681_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|818875_820957_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|821192_822686_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|822916_823711_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|823931_825290_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|825286_826129_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|826147_828034_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|828271_828904_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|828922_829525_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|829676_830627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|831207_831915_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|832273_833260_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|833399_834413_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|834409_835360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698398.1|835377_835518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|835472_835931_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|835967_837281_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|837298_837670_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|837666_839130_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|839270_839999_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|839980_842830_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|843042_843993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	1034386	1102873	4101147	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1034386_1035337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1036105_1036744_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1037633_1038080_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1038161_1038863_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1038863_1039631_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1039627_1040866_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1040865_1041792_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1041894_1043010_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1043025_1043976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1044329_1044911_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1044907_1045741_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1045951_1047265_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1047441_1048323_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1048342_1049194_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1049246_1050335_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1050445_1051573_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1051807_1052419_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1052517_1053468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1053689_1054067_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1054214_1054712_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1054708_1055236_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1055369_1056185_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1056197_1057379_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1057426_1058320_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1058446_1058917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1059042_1059870_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1059898_1060675_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1060671_1060947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1060961_1061426_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1061437_1062139_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1062248_1062749_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1062831_1064010_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1065637_1065973_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1066160_1067609_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1067666_1068011_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1068117_1068657_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1068749_1069700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1069717_1069957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1070438_1070870_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1071051_1071456_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1072692_1073016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1073018_1073906_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1073938_1074364_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1074435_1074789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1075028_1075535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1075573_1076905_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1076964_1077780_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1077776_1078631_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1081693_1084237_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1085603_1087358_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1087354_1089475_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1089479_1091675_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1091671_1095013_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1097815_1098766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1098831_1099011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1099127_1099883_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1099869_1101015_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1101922_1102873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	1163364	1218852	4101147	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1163364_1164315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1165516_1165963_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1165955_1167431_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1167427_1168183_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1168175_1169186_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1169175_1170852_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1171164_1171497_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1171510_1171906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1171915_1172242_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1172238_1172565_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1172491_1173514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1173510_1173861_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1173908_1174337_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1174344_1175718_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1175858_1176236_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1176498_1177806_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1177866_1178697_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1178693_1179182_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1179223_1180744_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1180787_1181264_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1182067_1184665_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1184694_1185516_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1186242_1186992_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1187175_1188054_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1188151_1188868_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1188882_1189443_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1189609_1190374_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1190393_1191251_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1191247_1192447_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1192486_1193821_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1193873_1196210_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1196335_1196899_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1196907_1197999_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1198070_1198526_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1198526_1199321_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1199317_1200499_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1200485_1201091_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1201087_1201861_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1201872_1202700_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1202861_1205225_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1205292_1206012_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1206135_1206561_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206595_1207546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1207663_1208590_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1208655_1209813_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1209793_1210261_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1210408_1211359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1211375_1211810_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1211799_1212150_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1212346_1213501_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1213497_1214670_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1214717_1215611_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1215656_1216094_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1216153_1216843_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1216852_1217803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1217901_1218852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	1511422	1559437	4101147	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1511422_1512373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1512471_1515072_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1515178_1516183_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1516291_1517632_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1517672_1518701_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1518896_1519442_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1519438_1519999_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1520097_1521048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1521085_1521673_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1521690_1522074_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1523433_1524726_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1524860_1525901_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1525998_1527015_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1527282_1527930_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1528055_1528814_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1528798_1529578_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1529595_1530480_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1530476_1531256_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1531360_1531960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1532248_1533001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1533119_1534520_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1534543_1534942_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1535117_1535318_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1535456_1536185_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1536318_1537734_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1537737_1538601_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1538613_1539363_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1539545_1541561_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1541542_1542211_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1542985_1543936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1544034_1544985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1545133_1545472_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1545529_1545691_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1545722_1545923_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1546188_1548762_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1548832_1551382_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1553932_1554421_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1554512_1555664_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1555717_1556539_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1556577_1557807_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1557935_1558376_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1558486_1559437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	1606856	1662285	4101147	transposase,tRNA	uncultured_Caudovirales_phage(16.67%)	50	NA	NA
WP_005012067.1|1606856_1607807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1609364_1610015_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1610143_1611346_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1611423_1613460_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1613712_1614204_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1614419_1614932_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1614949_1616161_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1616198_1616609_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1616610_1616934_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1616936_1617449_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1617578_1619441_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1619450_1619792_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1619791_1619986_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1620110_1621004_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1621000_1621951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1622075_1622885_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1623085_1624036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1625309_1626527_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1627583_1628486_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1628562_1629435_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1629565_1629934_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1629991_1631038_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1631233_1632490_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1632494_1633832_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1633981_1634938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1635040_1635973_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1636088_1636409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1636401_1636761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1636808_1638383_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1638435_1639380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1639397_1640228_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1640220_1641855_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1641851_1643207_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1644113_1645691_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1645694_1646969_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1647066_1647441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1649156_1650290_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1650327_1650933_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1650929_1651748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1651819_1654444_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1654430_1654685_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1654853_1655804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930591.1|1655800_1656382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1656685_1656946_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1657111_1657735_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1657734_1658508_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1658504_1659713_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1659738_1660212_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1660285_1661236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1661334_1662285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2015443	2076791	4101147	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2015443_2016394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2016510_2017230_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2017402_2018389_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2018389_2018872_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2018875_2020159_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2020155_2021094_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2021090_2022800_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2022809_2024057_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2025667_2026957_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2028094_2028853_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2029529_2030273_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2030347_2031088_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2031283_2032120_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2032170_2032941_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2032990_2034043_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2034039_2034666_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2034662_2035697_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2035875_2036892_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2036990_2037941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2040681_2041971_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2042089_2042527_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2042570_2043779_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2043925_2044390_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2044413_2045364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2046348_2047122_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2047118_2048117_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2048201_2048978_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2049133_2050738_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2051118_2052243_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2052369_2052993_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2052989_2054891_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2054939_2055734_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2055746_2056748_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2056744_2057251_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2057243_2058092_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2058189_2058732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2058775_2059726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2059881_2060208_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2060204_2060489_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2060485_2060965_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2060961_2062590_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2062586_2062931_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2062930_2065864_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2067022_2067973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2068071_2068368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2068474_2069392_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2069396_2070110_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2070123_2071095_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2072814_2073195_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2073198_2074386_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2074809_2075547_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2075840_2076791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2097582	2168735	4101147	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2097582_2098533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2099085_2100711_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2100760_2101795_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2101797_2103144_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2103140_2104655_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2104645_2105656_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2106129_2107071_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2107079_2108048_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2109587_2110556_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2110733_2111723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2111769_2112528_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2112717_2113455_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2113553_2114504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2114688_2115471_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2115464_2116166_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2116405_2117008_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852915.1|2118113_2118317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2118334_2119285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2119281_2120838_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2120830_2121604_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2121662_2122613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2122694_2123870_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2123883_2125941_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2125937_2126963_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2126974_2128264_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2128286_2129384_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2129380_2130271_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2130267_2132352_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2132383_2133553_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2133594_2134335_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2134334_2135105_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2135429_2135597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2135960_2136746_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2136772_2138857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2139024_2140980_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2141303_2141804_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2141902_2143429_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2143566_2144454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2144468_2145422_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2145473_2147564_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2147579_2147966_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2150659_2151463_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2152756_2153659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2153723_2154500_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2154821_2155871_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2155994_2157665_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2157669_2158464_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2158562_2159513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2159532_2160438_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2160515_2161214_-	pirin family protein	NA	NA	NA	NA	NA
WP_054604381.1|2161432_2162317_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2162326_2163814_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2163813_2164881_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2164944_2166357_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2166542_2167763_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2167784_2168735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2252936	2304108	4101147	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2252936_2253887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2253985_2254756_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2254752_2255424_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2255420_2256062_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2256074_2256995_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2257155_2258316_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2258357_2259308_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2259972_2260173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2260295_2261990_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2262111_2262381_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2262496_2262895_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2262905_2263862_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2263998_2264544_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2264564_2266514_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2266901_2267678_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2267683_2268076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2268497_2269448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2269444_2270542_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2270573_2271524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2273305_2274547_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2274558_2275332_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2275358_2276309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2276407_2277190_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2277278_2278505_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2279230_2280616_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2280634_2281240_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2281236_2283093_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2283089_2283890_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2283904_2285098_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2285165_2286140_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2286262_2287486_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2287596_2289801_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2290095_2290755_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2290762_2290969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2291307_2292063_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2292078_2292240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2292333_2292849_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2293121_2293439_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2293383_2294028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2294153_2295509_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2295555_2296896_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2296997_2297630_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2297629_2299990_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2300031_2300991_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2300977_2301664_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2301660_2301993_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2302108_2303059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2303157_2304108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2402403	2443073	4101147	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2402403_2403354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2403464_2403647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2403746_2404343_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2404526_2405618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2406117_2406528_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2406586_2406928_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2406933_2409351_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2409363_2410386_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2410460_2410820_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2410835_2411033_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2411368_2412319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2412513_2412963_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2412959_2413910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2414020_2415469_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2415583_2415865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168160443.1|2415801_2415951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2415968_2416919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2417163_2417877_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2417999_2418227_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2418521_2419160_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2419268_2420303_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2420299_2421250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2421665_2422190_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2422193_2422463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2422661_2423723_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2423806_2425441_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2425442_2426246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2426274_2427234_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2427237_2428752_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050821245.1|2428788_2430051_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931018.1|2430225_2430696_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2430731_2431343_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2431373_2431997_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2432077_2433610_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2433644_2434886_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2434929_2435961_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2435957_2437127_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2437120_2437801_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2437962_2438805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2438967_2439939_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2440110_2440989_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2441011_2442082_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2442122_2443073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2447184	2529319	4101147	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2447184_2448135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2448884_2449319_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2449311_2450547_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2450554_2451349_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2451345_2452149_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2452175_2453153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2453181_2454753_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2454763_2455585_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2457309_2458740_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2458752_2459442_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2459537_2460878_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2460879_2461137_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2461490_2463083_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2463179_2464640_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2464862_2465474_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2469220_2470171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2470586_2473223_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2473219_2474344_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2474340_2475723_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2475858_2476326_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2477244_2478390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2478391_2480122_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2480239_2480548_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2480560_2481373_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2482253_2483342_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2484544_2485333_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2485372_2486977_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2487057_2487798_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2487805_2488300_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2488672_2489692_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2489688_2491071_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2491103_2491964_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2492967_2493849_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2493907_2494345_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2494435_2495407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2495445_2496390_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2496485_2497295_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2497371_2497746_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2497852_2498545_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2498537_2498954_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2499064_2499697_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2499725_2500169_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2500190_2501282_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2501336_2502137_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2502272_2502893_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2503032_2503506_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2504645_2505596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2505592_2513254_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2513494_2517541_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2517853_2518435_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2518431_2519730_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2519809_2520838_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2521098_2522049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2522045_2522996_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2523312_2523918_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2523971_2525285_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2525359_2525830_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2525829_2526618_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2526628_2528281_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2528368_2529319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2553244	2600953	4101147	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2553244_2554195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2554329_2555436_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2555446_2556544_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2556688_2557894_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2557900_2558422_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2558418_2558910_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2558906_2559158_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2559138_2559624_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2559759_2563221_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2563238_2564123_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2564132_2564564_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2564810_2565314_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2565391_2566792_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2566866_2567742_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2567738_2568746_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2569213_2569519_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2569609_2570200_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2570390_2571407_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2571598_2573935_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2574017_2574452_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2574550_2575501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2575599_2576550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2576546_2577341_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2577372_2578077_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2578151_2578952_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2578948_2579356_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2579352_2579994_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2579986_2581987_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2583247_2584579_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2584575_2585526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2587232_2587499_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2588206_2588545_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2593098_2593701_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2593797_2595087_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2595144_2595876_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2595872_2596676_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2596672_2597761_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2597757_2598687_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2598835_2599981_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2600002_2600953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2608950	2672698	4101147	transposase,protease	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2608950_2611266_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2611321_2613490_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2613486_2618676_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2618765_2619080_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2619307_2619553_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2619647_2620166_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2620265_2621471_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2621586_2622984_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2623100_2623679_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2623751_2625143_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2625310_2626261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2626541_2627162_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2627158_2627572_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2627568_2628612_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2628667_2628856_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2628865_2629630_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2629720_2630377_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2630468_2631227_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2631252_2632854_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2633054_2634059_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2634159_2634423_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2634540_2635317_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2635907_2636858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2639241_2640354_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2640410_2641361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2641378_2641645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2641569_2641791_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2642004_2643411_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2643407_2644712_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2644708_2645896_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2646112_2646565_+	Mth938-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2646567_2647032_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2647111_2648791_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2648895_2649873_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2649952_2650921_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2650941_2652315_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2652311_2653148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2653264_2653720_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2653735_2654008_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2654100_2654424_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2654471_2654852_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2655071_2655869_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2656025_2657888_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2657937_2658849_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2658853_2659120_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2659206_2660076_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2660211_2661177_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2661347_2662358_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2662505_2663657_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2664799_2666272_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2666282_2666693_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2666756_2667803_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2667909_2668788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2668801_2669998_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2670074_2671751_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2671747_2672698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	2681457	2727027	4101147	transposase	Bacillus_virus(20.0%)	45	NA	NA
WP_010930176.1|2681457_2682408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2682482_2683637_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2683693_2684644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2684742_2685048_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2685076_2685511_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2685512_2686757_-	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2686753_2687464_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2687478_2688390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|2688577_2688742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2688759_2689710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2689801_2690206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2690202_2690661_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2690667_2691576_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2691572_2692439_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2692425_2693253_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2693263_2694391_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2695468_2696707_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2696748_2698011_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2698017_2698770_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2698821_2699007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2699282_2699747_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2699778_2700438_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2700582_2702691_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2702687_2703638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2703741_2704362_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2704453_2705206_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2706340_2707465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2707510_2707879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2708120_2709071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2710106_2710649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2710846_2711017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2711034_2711985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2711981_2712947_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2713016_2713853_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2714365_2715475_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2715536_2716487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2716679_2717462_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2717475_2718225_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|2718252_2719599_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|2719624_2720554_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|2720669_2721575_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|2721592_2722792_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|2722864_2723557_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|2723605_2726032_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|2726076_2727027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3096433	3150174	4101147	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3096433_3097384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3097788_3098433_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3098457_3099042_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3099142_3099760_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3099762_3101478_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3101474_3101783_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3101799_3102417_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3102461_3102764_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3102864_3103719_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3103906_3104131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3104300_3104573_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3104990_3105398_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3105767_3106562_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3106662_3107898_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3107966_3108983_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3108994_3110371_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3110367_3111564_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3111560_3113099_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3113095_3114355_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3116295_3117246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3118012_3119107_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3119099_3120434_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3120387_3121071_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3121096_3122260_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3122256_3123258_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3123257_3124130_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3124126_3124876_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3124872_3125664_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3125660_3126800_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3127075_3127861_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3127894_3128677_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3128680_3129070_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3130209_3131073_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3131108_3132197_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3132193_3133144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3133497_3136476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3137402_3138281_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3140229_3141180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3141176_3141644_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3141686_3142457_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3142477_3143278_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3143288_3144698_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3144792_3145578_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3145817_3146834_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3146941_3147334_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3147471_3148152_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3148156_3149128_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3149223_3150174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3156329	3215629	4101147	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3156329_3158093_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3158204_3159083_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3159195_3160011_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3160014_3160266_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3160350_3161367_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3161697_3161919_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3164279_3165197_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3165694_3166903_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3166982_3168554_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3168671_3169607_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3169795_3170740_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3171307_3177025_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3177030_3178158_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3178213_3178840_+	aminotransferase class IV family protein	NA	NA	NA	NA	NA
WP_010931363.1|3179111_3180128_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3180223_3180934_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3180930_3181920_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3182015_3183647_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3183649_3184387_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3184542_3185415_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3185683_3186904_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3186900_3187560_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3187631_3188264_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3188293_3188812_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3188822_3189932_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3189978_3190833_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3190834_3191737_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3192959_3193910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3195666_3196656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3196652_3196811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3196831_3197620_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3197616_3198648_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3198666_3199230_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3199285_3200806_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3201069_3201774_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3201781_3202519_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3202624_3202999_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3203041_3204331_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3204327_3205497_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3205493_3206333_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3206392_3207328_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3207340_3208291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3208389_3209352_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3209383_3209743_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3209867_3210770_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3210771_3212544_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3212578_3213355_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3214678_3215629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3230567	3288640	4101147	transposase,tRNA	Catovirus(14.29%)	46	NA	NA
WP_005012808.1|3230567_3231518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3231646_3232780_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3232823_3233729_-	hydrolase	NA	NA	NA	NA	NA
WP_010931394.1|3235428_3236349_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3236356_3237334_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3237392_3238427_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3240401_3240638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3240764_3241628_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3241716_3242538_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3242617_3243355_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3243351_3244344_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3244457_3245120_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3245164_3246313_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3248636_3249587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3249927_3250878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3250976_3251927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3252223_3252721_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3252763_3254539_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3254546_3255413_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3255419_3256154_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3257323_3258118_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3258407_3258998_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3259031_3260360_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3260434_3261580_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3261691_3262690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3262652_3263087_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3264603_3265488_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3265484_3266690_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3266686_3267547_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3267659_3269450_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3269490_3270156_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3270156_3270465_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3270630_3271917_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3273350_3274301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3276252_3277467_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3277572_3278562_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3278558_3279167_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3279179_3279809_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3279805_3280426_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3280457_3281249_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3282100_3282556_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3282574_3283501_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3283554_3284841_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3285771_3286644_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3286640_3287591_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3287689_3288640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3438554	3492749	4101147	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|3438554_3439505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3439627_3440356_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3440452_3441631_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3441627_3442461_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3442497_3443238_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3443357_3444533_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3444529_3445483_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3445496_3445898_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3445890_3446496_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3446583_3446748_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3446864_3447713_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3447709_3448363_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3448379_3449663_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3449902_3451528_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3451621_3452023_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3452047_3452482_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3452483_3454133_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3454173_3455343_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3455345_3456209_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3459572_3460277_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3460270_3461065_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3461061_3462027_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3462030_3462951_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3463047_3464211_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3464433_3465324_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3465327_3465831_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3465873_3466872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3466868_3467819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3467907_3468195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3468386_3469337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3469396_3469957_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3471459_3472341_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3472454_3473657_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3473785_3475645_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3475722_3476532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3476602_3477604_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3477635_3478496_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3478695_3479700_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3479696_3481283_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3481291_3482218_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3482240_3482867_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3482965_3483916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3483912_3485049_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3485102_3485879_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3485903_3486362_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3486501_3487143_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3487207_3488590_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3488609_3489464_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3489622_3490234_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3490243_3490693_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3491211_3491352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3491359_3491521_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_173651708.1|3491634_3491781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3491798_3492749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3503365	3556666	4101147	transposase,tRNA	Prochlorococcus_phage(33.33%)	44	NA	NA
WP_005012067.1|3503365_3504316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3505046_3506027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3506040_3507165_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3507172_3508927_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3509033_3509933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3509997_3510981_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3511116_3512097_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3512113_3513505_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3513656_3514193_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3514123_3515509_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3515651_3516290_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3516376_3518266_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3518262_3519204_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3519309_3520359_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3520611_3521313_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3521309_3522008_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3522008_3523364_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3523360_3523852_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3523870_3524827_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3526237_3528340_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3528510_3529554_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3529597_3530341_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3531362_3531773_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3532722_3533520_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3533618_3534569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3534565_3535516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3535602_3536553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3536667_3537669_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3537759_3538326_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3538644_3540558_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3540599_3542030_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3542142_3543555_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3543571_3544267_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_168160448.1|3544294_3544468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3544485_3545436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|3545538_3546174_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|3546170_3547064_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|3547458_3548559_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|3548640_3549015_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|3549074_3551939_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|3552083_3552824_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|3552893_3554105_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|3554133_3555102_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3555715_3556666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	3763114	3837458	4101147	transposase	Staphylococcus_phage(15.38%)	57	NA	NA
WP_005012067.1|3763114_3764065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3764295_3765987_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3766035_3766308_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3766304_3766676_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3766771_3766906_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3767311_3768721_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3768723_3769833_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3769927_3772381_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3772499_3773291_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3773410_3774838_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3774876_3775848_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3776266_3777430_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3777517_3778363_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3779919_3780870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3781424_3781799_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3781873_3782932_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3782955_3783906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3786787_3787957_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3788057_3789665_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929810.1|3789711_3791733_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3791761_3792007_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3792020_3793211_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3793406_3794372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3794394_3795534_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3795745_3796708_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3796831_3798856_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3799052_3801296_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3801574_3802033_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3802960_3805582_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3805645_3808273_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3808424_3809489_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3809488_3810259_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3810267_3811101_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3811113_3811893_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3811966_3813400_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3813427_3814186_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3814241_3816092_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3816185_3816662_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3816678_3817599_-	bestrophin family protein	NA	NA	NA	NA	NA
WP_003818232.1|3817705_3818206_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3818579_3819272_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_162268689.1|3819386_3819563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3819580_3820531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3820527_3824301_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3824637_3826527_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3826538_3827432_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3827535_3828333_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3828329_3829181_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3829242_3829923_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3829959_3830286_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3830286_3831246_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3831266_3831755_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3832036_3833053_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003807735.1|3833244_3834348_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931562.1|3834434_3835199_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931563.1|3835320_3836511_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010929591.1|3836507_3837458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011400	Bordetella pertussis strain B3629 chromosome	4101147	4023318	4076750	4101147	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4023318_4024269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024438_4025665_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025864_4026731_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026723_4027686_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027786_4028737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028835_4029786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029884_4030835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030831_4032325_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032321_4035429_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035425_4038494_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038490_4039741_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039921_4040683_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040715_4041366_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041368_4042208_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042448_4043192_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4043274_4043622_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043719_4044562_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044606_4045494_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045520_4045709_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045806_4047264_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4047250_4048777_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048795_4049263_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4049262_4050285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4050405_4051125_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4051200_4052301_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052302_4053493_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053612_4054629_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054947_4055619_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055615_4056524_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056735_4057383_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061234_4062311_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062321_4063131_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063220_4063994_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4063994_4064159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4064176_4065127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4065015_4066038_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4066027_4067182_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4067221_4068634_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4068758_4069625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4069626_4070451_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4070447_4071209_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4071289_4071976_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4072149_4073157_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4073153_4073933_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4073990_4075253_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4075799_4076750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
