The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	116712	125024	2846866	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|116712_117498_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|117623_118514_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062182.1|118523_119870_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683922.1|119983_121084_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	8.0e-09
WP_000624564.1|121086_121764_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|121894_123001_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217240.1|123224_125024_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 2
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	327436	396432	2846866	protease,tRNA	Staphylococcus_phage(95.56%)	66	NA	NA
WP_060649604.1|327436_333985_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000836464.1|334309_334621_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001622206.1|334642_337060_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|337348_338530_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|338639_339593_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|339589_340153_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|340269_340671_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|341242_342070_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|342072_342192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|342303_343305_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|343426_343891_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159035.1|343903_345085_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493880.1|345095_345728_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_000077349.1|345734_346778_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	3.5e-195
WP_001261660.1|347259_348762_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|349404_349719_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989114.1|349718_351011_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	1.8e-217
WP_001032832.1|351097_351952_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|352227_352452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060649605.1|352650_353121_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.5	1.9e-68
WP_001152694.1|353233_353677_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030472.1|353663_354107_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.2	2.4e-49
WP_001168913.1|354403_355039_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492904.1|355205_355826_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|356325_357039_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|357297_357600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200539.1|357855_358221_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	3.1e-58
WP_000623469.1|358217_358571_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	95.7	6.1e-19
WP_060649606.1|358820_359654_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	2.3e-157
WP_000366165.1|359865_360774_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|360898_362092_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|362462_364055_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065004.1|364435_365182_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.8	1.1e-139
WP_000672008.1|365186_365660_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.0e-82
WP_000718106.1|365725_365983_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	2.1e-45
WP_060649607.1|365979_366981_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	95.5	1.0e-180
WP_000348376.1|366985_368464_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.5	1.3e-280
WP_078159586.1|368626_369079_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	93.1	7.7e-75
WP_078159558.1|369381_370032_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	72.2	1.5e-31
WP_000070651.1|370112_371108_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.3	1.4e-68
WP_000669033.1|371183_371810_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	87.0	3.9e-85
WP_060649610.1|371850_372192_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	3.6e-53
WP_000414203.1|372292_372865_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	91.4	1.0e-23
WP_000864140.1|373062_373620_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	97.5	1.7e-79
WP_000375476.1|373991_374168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025174588.1|374178_374562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000747807.1|375248_375695_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|376146_376242_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001268925.1|376458_376626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000731441.1|377251_377695_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_060649611.1|377694_378138_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000260278.1|378137_378563_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_060649612.1|379063_381487_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001034578.1|381612_381990_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926705.1|382678_384289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060649613.1|384303_384603_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000413390.1|384856_386683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072574.1|386719_387955_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.5	4.6e-45
WP_000028603.1|387947_389504_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.5	2.5e-282
WP_060649614.1|389865_390585_-|protease	serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	94.6	2.9e-124
WP_060649615.1|390750_391467_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	96.6	1.9e-128
WP_001034984.1|391633_392350_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	61.3	1.0e-81
WP_001039017.1|392473_393193_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.3	6.0e-122
WP_060649616.1|393250_393973_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	91.7	1.5e-120
WP_060649617.1|394091_394799_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	94.9	2.6e-125
WP_060649618.1|395862_396432_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	60.0	2.9e-47
>prophage 3
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	498861	569192	2846866	holin,tail,integrase,terminase,protease,coat,transposase	Staphylococcus_phage(75.68%)	73	504075:504089	569688:569702
WP_000827735.1|498861_500028_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_060649624.1|500058_500385_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669865.1|500675_500849_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|500829_501432_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000164018.1|501701_502523_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	8.8e-69
WP_000284427.1|502515_503985_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
504075:504089	attL	TTTAATTAAAATCAA	NA	NA	NA	NA
WP_000898870.1|504168_505245_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177820.1|505264_506059_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031785526.1|506130_506238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323149.1|506248_507811_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275722.1|508015_509113_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	1.5e-47
WP_000149686.1|509484_510045_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140876.1|510097_511027_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|511219_511393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|511444_512824_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181318.1|512943_513972_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205103.1|514241_514643_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
WP_000267034.1|514699_514873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188080.1|515323_516364_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
WP_000713065.1|516420_517263_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033966.1|517259_517817_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966286.1|517876_518401_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|518521_519085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221650.1|519150_519891_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|519890_520763_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_060649625.1|520759_521440_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991297.1|521440_522337_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.2e-16
WP_000691583.1|522333_522714_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|522971_523148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|523389_523488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068517.1|523687_524974_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669709.1|525244_527314_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|528272_528452_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|528762_529023_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|529075_529426_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|530109_530559_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920042.1|531638_532130_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000861027.1|532320_533076_-	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	99.6	4.5e-152
WP_000611512.1|533087_533342_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|533393_533501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078159559.1|533553_533730_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	8.5e-22
WP_060649626.1|533872_534247_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	98.4	3.3e-39
WP_000400415.1|534280_534565_-	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	78.2	1.0e-32
WP_000421095.1|534608_534776_-	hypothetical protein	NA	Q4ZD62	Staphylococcus_phage	63.0	7.1e-10
WP_060649627.1|534753_539430_-|tail	tail fiber domain-containing protein	tail	Q4ZD63	Staphylococcus_phage	39.2	3.6e-284
WP_060649628.1|539448_540939_-|tail	phage tail family protein	tail	G4KNR0	Staphylococcus_phage	59.3	4.1e-165
WP_000595614.1|545477_546494_-	leukocidin family pore-forming toxin	NA	A0A2I6PER8	Staphylococcus_phage	29.9	1.0e-26
WP_000791401.1|546515_547571_-	leukocidin family pore-forming toxin	NA	A0A2I6PER8	Staphylococcus_phage	35.0	1.1e-36
WP_000206615.1|548001_549225_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045065.1|549735_551043_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001239269.1|552149_553085_+	TDT family transporter	NA	NA	NA	NA	NA
WP_001035599.1|554587_555292_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293088.1|555446_556016_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
WP_060649630.1|556012_556354_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_060649631.1|556356_556884_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	92.6	1.5e-82
WP_000277738.1|557241_558888_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_060649632.1|558954_559476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060649633.1|559486_559717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001190614.1|559730_560072_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_060649634.1|560419_561061_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.0	8.0e-110
WP_001003076.1|561062_561326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059599.1|561327_561684_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
WP_060649635.1|561926_563297_-	DNA primase family protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	94.7	1.2e-256
WP_060649636.1|563308_564178_-	primase C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	77.2	1.2e-132
WP_060649637.1|564243_564564_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	91.1	6.5e-36
WP_060649638.1|564564_564948_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231376.1|564949_565153_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784891.1|565137_565293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000124597.1|565304_565577_-	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	84.4	7.7e-38
WP_000560872.1|565577_565799_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	2.0e-07
WP_001186980.1|565970_566543_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_060649639.1|566569_567958_+	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_060649640.1|567971_569192_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	1.4e-99
569688:569702	attR	TTGATTTTAATTAAA	NA	NA	NA	NA
>prophage 4
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	598796	614049	2846866	coat,terminase	Staphylococcus_phage(83.33%)	22	NA	NA
WP_060649647.1|598796_599309_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	99.4	5.5e-69
WP_000840479.1|600626_601136_-	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	1.1e-21
WP_060649648.1|601413_601983_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	8.7e-100
WP_060649630.1|601979_602321_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_060649631.1|602323_602851_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	92.6	1.5e-82
WP_060649632.1|602940_603462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060649633.1|603472_603703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001190614.1|603716_604058_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_060649634.1|604405_605047_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.0	8.0e-110
WP_001003076.1|605048_605312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060649649.1|605313_605676_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.0	4.1e-63
WP_060649650.1|605960_607424_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	95.5	3.3e-276
WP_001002692.1|607440_608310_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	97.2	3.8e-163
WP_060649651.1|608397_608691_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	60.7	3.4e-23
WP_060649652.1|608691_609075_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231376.1|609076_609280_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_053016798.1|609264_609420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481971.1|609416_609734_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
WP_000794657.1|609737_609944_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	71.6	6.4e-21
WP_000672427.1|610096_610819_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	38.2	3.3e-35
WP_000240652.1|612072_613689_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	7.6e-157
WP_000917289.1|613764_614049_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 5
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	722370	736077	2846866		Streptococcus_phage(100.0%)	14	NA	NA
WP_000420682.1|722370_722685_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|722700_723087_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|723115_724501_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|724503_724656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060649662.1|724678_725884_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	6.3e-233
WP_001009056.1|725926_726148_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|726264_726762_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|726736_727243_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|727226_729674_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_060649663.1|729676_731854_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	83.9	1.0e-297
WP_001574272.1|731850_732852_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	99.7	2.5e-190
WP_001224319.1|732848_733781_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
WP_001791010.1|734025_734142_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001574275.1|734157_736077_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	95.0	0.0e+00
>prophage 6
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	740963	746344	2846866	transposase,integrase	Streptococcus_phage(100.0%)	7	736841:736856	755356:755371
736841:736856	attL	AAAGAAGTAAGGATAA	NA	NA	NA	NA
WP_001573639.1|740963_742214_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	59.4	2.0e-109
WP_000336323.1|742646_742814_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|742873_743227_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|743731_744154_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|744150_744381_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|744841_745045_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|745126_746344_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
755356:755371	attR	TTATCCTTACTTCTTT	NA	NA	NA	NA
>prophage 7
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	1387372	1450715	2846866	bacteriocin,transposase	Staphylococcus_phage(58.33%)	60	NA	NA
WP_001105999.1|1387372_1388047_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_078159567.1|1388076_1388466_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_060649727.1|1388651_1390031_-	tetracycline efflux MFS transporter Tet(K)	NA	NA	NA	NA	NA
WP_001106057.1|1390229_1390904_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|1392165_1392909_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|1393005_1393434_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_063852638.1|1393479_1395489_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_000671996.1|1396467_1396896_-	VOC family protein	NA	NA	NA	NA	NA
WP_000750311.1|1396976_1397906_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_001038847.1|1398067_1400056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000283873.1|1400250_1401360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058155.1|1401352_1401721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015575.1|1401720_1403337_+	primase	NA	NA	NA	NA	NA
WP_000676592.1|1403561_1405241_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	29.2	2.4e-44
WP_000175888.1|1405329_1405668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001024805.1|1405761_1406073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001092190.1|1406087_1406591_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_001015193.1|1406605_1406827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072093071.1|1407118_1407430_-	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_000655859.1|1408378_1409284_+	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_000281076.1|1409283_1409589_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_000359017.1|1409602_1411876_+	type III-A CRISPR-associated protein Cas10/Csm1	NA	NA	NA	NA	NA
WP_000599362.1|1411878_1412304_+	type III-A CRISPR-associated protein Csm2	NA	NA	NA	NA	NA
WP_000286998.1|1412305_1412950_+	type III-A CRISPR-associated RAMP protein Csm3	NA	NA	NA	NA	NA
WP_000208937.1|1412960_1413869_+	type III-A CRISPR-associated RAMP protein Csm4	NA	NA	NA	NA	NA
WP_000153149.1|1413871_1414894_+	type III-A CRISPR-associated RAMP protein Csm5	NA	NA	NA	NA	NA
WP_000865879.1|1414893_1416162_+	type III-A CRISPR-associated protein Csm6	NA	NA	NA	NA	NA
WP_000608705.1|1416158_1416893_+	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA	NA
WP_000669699.1|1418002_1418161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377077.1|1419587_1420103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790334.1|1420297_1420948_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|1421029_1422673_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000968572.1|1422730_1423057_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_001836597.1|1423191_1423872_-	cytochrome C biogenesis protein region	NA	NA	NA	NA	NA
WP_000746201.1|1423868_1424222_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_025175377.1|1424238_1424646_-	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_060649728.1|1424945_1426292_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001105999.1|1426574_1427249_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_078159569.1|1427334_1427862_+	replication-associated protein RepA family protein	NA	NA	NA	NA	NA
WP_001039249.1|1428755_1428944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000428914.1|1429604_1430036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813124.1|1430761_1430929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001836610.1|1431491_1432310_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_078159570.1|1432705_1432840_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_060649729.1|1433213_1437677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101258988.1|1437744_1437816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|1439374_1439467_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|1439768_1440590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|1440714_1441710_+	YeiH family protein	NA	NA	NA	NA	NA
WP_060649886.1|1442037_1442640_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	32.4	2.2e-16
WP_060649731.1|1443141_1445322_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.5	3.5e-250
WP_060649732.1|1445314_1445680_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	48.7	5.0e-24
WP_000361064.1|1445917_1446295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|1446389_1447064_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|1447098_1447311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633163.1|1447630_1447966_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000120605.1|1448026_1448341_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_001834181.1|1448337_1449630_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	3.0e-188
WP_000358995.1|1449647_1450043_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|1450421_1450715_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 8
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	2142901	2150720	2846866		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2142901_2143957_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2143956_2144643_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2144617_2145091_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|2145431_2145872_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|2146151_2146736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|2146834_2147548_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2147551_2147971_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2147972_2148641_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604517.1|2148991_2149585_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|2149568_2150720_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 9
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	2162696	2176974	2846866		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663018.1|2162696_2163755_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	3.3e-20
WP_000197263.1|2163912_2164461_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|2165151_2166069_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_060649813.1|2166159_2166267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|2166338_2167844_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|2168184_2168685_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|2168704_2169571_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2170371_2170770_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2170732_2172838_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2172955_2173927_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876313.1|2174301_2175273_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245580.1|2175259_2176216_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616860.1|2176212_2176974_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	3.6e-16
>prophage 10
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	2229065	2243321	2846866	coat,integrase,terminase	Staphylococcus_phage(80.0%)	21	2228735:2228750	2235155:2235170
2228735:2228750	attL	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_060649819.1|2229065_2231438_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	1.3e-91
WP_001085185.1|2231459_2231924_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_060649820.1|2232486_2233593_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	1.2e-76
WP_072474260.1|2233598_2234246_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|2234403_2234610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|2234645_2234873_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_060649821.1|2234869_2235016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058489.1|2235008_2235218_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	98.6	1.6e-30
2235155:2235170	attR	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_060649822.1|2235220_2235547_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	89.8	1.8e-49
WP_060649823.1|2235611_2236481_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	94.8	8.7e-160
WP_060649824.1|2236497_2237955_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	5.0e-277
WP_060649825.1|2238255_2238618_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	2.0e-65
WP_000998182.1|2238619_2238904_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	92.6	1.0e-45
WP_001019771.1|2238900_2239542_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	5.0e-112
WP_001190601.1|2239889_2240231_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	8.4e-58
WP_000449693.1|2240244_2240475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001193444.1|2240485_2241007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060649826.1|2241096_2241624_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	96.0	6.6e-86
WP_060649827.1|2241626_2241968_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	95.6	4.6e-56
WP_060649828.1|2241964_2242534_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.3	5.6e-99
WP_000840479.1|2242811_2243321_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	1.1e-21
>prophage 11
NZ_CP012756	Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome	2846866	2413461	2421934	2846866		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807502.1|2413461_2413944_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	6.8e-21
WP_001010394.1|2413930_2415055_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174046.1|2415058_2415763_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	4.7e-47
WP_000848350.1|2415762_2416026_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|2416027_2416699_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_060649841.1|2416691_2418881_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	1.3e-140
WP_000483713.1|2418859_2420344_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_060649842.1|2420336_2421365_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.5e-62
WP_000238656.1|2421367_2421934_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	6.1e-29
