The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012514	Salmonella enterica subsp. enterica serovar Thompson strain RM1986 chromosome, complete genome	4701355	1059879	1106719	4701355	holin,tail,capsid,integrase	Salmonella_phage(87.27%)	63	1046701:1046716	1086121:1086136
1046701:1046716	attL	TCGGCAATCAGTTTAT	NA	NA	NA	NA
WP_023262989.1|1059879_1061172_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.7e-252
WP_000065276.1|1061216_1061465_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237030.1|1061505_1061745_-	DUF4060 family protein	NA	H6WRW9	Salmonella_phage	98.7	9.7e-37
WP_077905217.1|1061787_1062945_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	1.8e-216
WP_001525214.1|1062907_1065823_-	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	89.4	0.0e+00
WP_023262988.1|1065945_1066296_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	77.6	5.6e-49
WP_000551860.1|1066317_1066488_-	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	80.0	1.3e-14
WP_077914912.1|1066480_1066747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024150574.1|1066790_1067201_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370218.1|1067320_1067560_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	44.0	3.2e-11
WP_077914913.1|1067525_1067900_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	3.6e-62
WP_024150573.1|1067990_1068968_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	98.4	5.8e-160
WP_000800012.1|1068970_1069720_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
WP_023262985.1|1069730_1069934_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	100.0	4.0e-31
WP_077914926.1|1069943_1070078_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	95.5	1.4e-16
WP_000065482.1|1070074_1070608_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	67.9	3.8e-41
WP_000704096.1|1070634_1071627_-	peptidase M85	NA	NA	NA	NA	NA
WP_001217669.1|1071896_1072130_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000807548.1|1072241_1072463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929790.1|1072545_1073148_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_000178134.1|1073147_1073354_+	hypothetical protein	NA	H6WRY8	Salmonella_phage	98.5	2.3e-34
WP_023262984.1|1073356_1073968_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	1.8e-90
WP_000801753.1|1073964_1074102_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	81.6	4.9e-09
WP_001047624.1|1074101_1074911_+	antitermination protein	NA	M9NZB0	Enterobacteria_phage	69.5	1.2e-110
WP_023262982.1|1075213_1075711_-	hypothetical protein	NA	A0A077K9U2	Edwardsiella_phage	52.7	3.1e-37
WP_023221874.1|1076050_1076239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001294873.1|1076328_1076718_+	membrane protein	NA	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
WP_000226307.1|1076704_1076986_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_023221873.1|1076985_1077600_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	82.4	2.0e-94
WP_023221872.1|1077596_1078139_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_023262981.1|1078241_1078745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023221870.1|1078805_1079435_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	99.0	7.8e-110
WP_023262979.1|1079437_1081060_+	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	99.1	0.0e+00
WP_023262978.1|1081059_1082529_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.6	1.2e-281
WP_139134618.1|1082413_1083151_+|capsid	minor capsid protein	capsid	A0A0M4REK0	Salmonella_phage	96.0	6.0e-109
WP_000873159.1|1083165_1084398_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
WP_000128058.1|1084402_1084900_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	100.0	3.0e-88
WP_023221867.1|1084911_1085853_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	7.0e-179
WP_023221866.1|1085894_1086263_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	99.2	3.3e-60
1086121:1086136	attR	ATAAACTGATTGCCGA	NA	NA	NA	NA
WP_023221865.1|1086228_1086636_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	99.3	1.1e-72
WP_023262467.1|1086632_1087187_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	98.9	2.4e-94
WP_023221863.1|1087173_1087563_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	97.7	7.8e-68
WP_000538608.1|1087537_1088104_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	99.5	1.8e-105
WP_001051850.1|1088106_1089258_+	DUF3383 family protein	NA	A0A0M4RD26	Salmonella_phage	100.0	2.5e-215
WP_000501635.1|1089268_1089709_+	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	100.0	9.4e-78
WP_023262851.1|1089712_1090165_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	99.3	2.0e-78
WP_023262852.1|1090342_1092352_+	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	99.3	0.0e+00
WP_000353826.1|1092351_1092927_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
WP_000155111.1|1092926_1093229_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
WP_023262853.1|1093231_1094305_+	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	96.3	4.7e-187
WP_023137771.1|1094301_1094652_+	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	66.7	4.5e-22
WP_130525691.1|1094655_1095396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038393821.1|1095460_1096216_+	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	91.6	8.5e-127
WP_001526515.1|1096215_1096569_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	96.6	2.1e-59
WP_023262651.1|1096569_1097769_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.7	2.6e-215
WP_023262652.1|1097765_1098446_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.9	1.7e-126
WP_023262653.1|1098445_1099960_+	hypothetical protein	NA	S4TP62	Salmonella_phage	62.8	2.5e-117
WP_023187585.1|1099974_1100493_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	52.6	2.3e-46
WP_071786695.1|1100741_1100927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000776343.1|1101578_1102781_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	100.0	6.3e-209
WP_072156355.1|1102989_1103346_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	84.3	3.3e-49
WP_000497440.1|1103473_1103680_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_000193775.1|1104106_1106719_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	3.7e-20
>prophage 2
NZ_CP012514	Salmonella enterica subsp. enterica serovar Thompson strain RM1986 chromosome, complete genome	4701355	2032152	2042768	4701355		Morganella_phage(25.0%)	12	NA	NA
WP_001157305.1|2032152_2033583_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377042.1|2033656_2034352_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_017465543.1|2034431_2034743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054540967.1|2035392_2036604_+	porin	NA	Q1MVN1	Enterobacteria_phage	56.2	1.3e-108
WP_024131163.1|2036863_2037052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2037062_2037275_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_017465541.1|2037729_2038998_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000394197.1|2039000_2039420_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_001532308.1|2039546_2039708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465540.1|2040188_2040986_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001736108.1|2041357_2041648_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	3.0e-08
WP_017465538.1|2042294_2042768_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
>prophage 3
NZ_CP012514	Salmonella enterica subsp. enterica serovar Thompson strain RM1986 chromosome, complete genome	4701355	4263596	4284045	4701355	plate,tail	Burkholderia_phage(40.0%)	25	NA	NA
WP_022544687.1|4263596_4264325_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	7.3e-35
WP_017465885.1|4265063_4265519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465886.1|4265515_4266121_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_017465887.1|4266125_4267895_-|tail	tail protein	tail	A0A0M3ULH6	Salmonella_phage	40.5	3.2e-52
WP_000359504.1|4267897_4268530_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951730.1|4268522_4269638_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
WP_001093501.1|4269628_4269988_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4270151_4271699_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703628.1|4271698_4272628_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000593184.1|4272624_4272987_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_017465888.1|4273314_4274037_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_017465889.1|4274046_4275090_-	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	6.5e-77
WP_017465890.1|4275077_4275287_-	membrane protein	NA	A4JWL2	Burkholderia_virus	58.8	2.8e-16
WP_017465891.1|4275286_4276240_-	hypothetical protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_054540978.1|4276239_4278594_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	4.0e-66
WP_001185654.1|4278690_4278819_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003639.1|4278778_4279096_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4279147_4279672_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4279671_4281099_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4281088_4281286_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4281282_4281738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465892.1|4281898_4282213_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	48.2	1.1e-19
WP_017465893.1|4282225_4282831_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	4.2e-60
WP_001226439.1|4282833_4283121_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|4283697_4284045_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
