assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	1	354844-354932	1	CRISPRCasFinder	no		csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	Orphan	AGTTTTATATAAATCAATATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA|105aa|up_9|NZ_CP009557.1_347497_347812_-,NA|108aa|up_7|NZ_CP009557.1_348849_349173_+,NA|71aa|up_2|NZ_CP009557.1_352600_352813_+,NA|99aa|up_0|NZ_CP009557.1_354465_354762_-,NA	NA|105aa|up_9|NZ_CP009557.1_347497_347812_-	NA	NA|244aa|up_8|NZ_CP009557.1_347948_348680_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|108aa|up_7|NZ_CP009557.1_348849_349173_+	NA	NA|70aa|up_6|NZ_CP009557.1_349206_349416_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|169aa|up_5|NZ_CP009557.1_349790_350297_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|379aa|up_4|NZ_CP009557.1_350480_351617_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|208aa|up_3|NZ_CP009557.1_351613_352237_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|71aa|up_2|NZ_CP009557.1_352600_352813_+	NA	NA|437aa|up_1|NZ_CP009557.1_352933_354244_-	pfam07613, DUF1576, Protein of unknown function (DUF1576)	NA|99aa|up_0|NZ_CP009557.1_354465_354762_-	NA	NA|226aa|down_0|NZ_CP009557.1_354969_355647_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|846aa|down_1|NZ_CP009557.1_355985_358523_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|156aa|down_2|NZ_CP009557.1_364256_364724_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_3|NZ_CP009557.1_365405_366152_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|271aa|down_4|NZ_CP009557.1_366616_367429_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|391aa|down_5|NZ_CP009557.1_367446_368619_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|428aa|down_6|NZ_CP009557.1_368632_369916_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|412aa|down_7|NZ_CP009557.1_369934_371170_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|394aa|down_8|NZ_CP009557.1_371183_372365_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|478aa|down_9|NZ_CP009557.1_372479_373913_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	2	540009-540098	2	CRISPRCasFinder	no		csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	Orphan	TAAAATAATATTAGATAAATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA,NA	NA|351aa|up_9|NZ_CP009557.1_527931_528984_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|453aa|up_8|NZ_CP009557.1_529137_530496_-	TIGR03173, pbuX, xanthine permease	NA|273aa|up_7|NZ_CP009557.1_531169_531988_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|226aa|up_6|NZ_CP009557.1_532077_532755_+	TIGR01528, Protein_pnuC	NA|214aa|up_5|NZ_CP009557.1_532788_533430_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|106aa|up_4|NZ_CP009557.1_533654_533972_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|204aa|up_3|NZ_CP009557.1_533984_534596_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|179aa|up_2|NZ_CP009557.1_534803_535340_+	pfam14317, YcxB, YcxB-like protein	NA|446aa|up_1|NZ_CP009557.1_536072_537410_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|291aa|up_0|NZ_CP009557.1_537665_538538_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|118aa|down_0|NZ_CP009557.1_540327_540681_+	pfam05987, DUF898, Bacterial protein of unknown function (DUF898)	NA|275aa|down_1|NZ_CP009557.1_540860_541685_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|474aa|down_2|NZ_CP009557.1_541832_543254_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|297aa|down_3|NZ_CP009557.1_543258_544149_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|126aa|down_4|NZ_CP009557.1_544388_544766_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|191aa|down_5|NZ_CP009557.1_544982_545555_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|213aa|down_6|NZ_CP009557.1_545695_546334_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|130aa|down_7|NZ_CP009557.1_546358_546748_+	pfam17032, zinc_ribbon_15, zinc-ribbon family	NA|624aa|down_8|NZ_CP009557.1_547104_548976_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|331aa|down_9|NZ_CP009557.1_549139_550132_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	3	540294-540364	3	CRISPRCasFinder	no		csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	Orphan	TAAAATAATATTAGATAAATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA,NA	NA|453aa|up_9|NZ_CP009557.1_529137_530496_-	TIGR03173, pbuX, xanthine permease	NA|273aa|up_8|NZ_CP009557.1_531169_531988_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|226aa|up_7|NZ_CP009557.1_532077_532755_+	TIGR01528, Protein_pnuC	NA|214aa|up_6|NZ_CP009557.1_532788_533430_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|106aa|up_5|NZ_CP009557.1_533654_533972_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|204aa|up_4|NZ_CP009557.1_533984_534596_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|179aa|up_3|NZ_CP009557.1_534803_535340_+	pfam14317, YcxB, YcxB-like protein	NA|446aa|up_2|NZ_CP009557.1_536072_537410_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|291aa|up_1|NZ_CP009557.1_537665_538538_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|449aa|up_0|NZ_CP009557.1_538669_540016_+	pfam01565, FAD_binding_4, FAD binding domain	NA|275aa|down_0|NZ_CP009557.1_540860_541685_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|474aa|down_1|NZ_CP009557.1_541832_543254_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|297aa|down_2|NZ_CP009557.1_543258_544149_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|126aa|down_3|NZ_CP009557.1_544388_544766_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|191aa|down_4|NZ_CP009557.1_544982_545555_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|213aa|down_5|NZ_CP009557.1_545695_546334_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|130aa|down_6|NZ_CP009557.1_546358_546748_+	pfam17032, zinc_ribbon_15, zinc-ribbon family	NA|624aa|down_7|NZ_CP009557.1_547104_548976_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|331aa|down_8|NZ_CP009557.1_549139_550132_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|555aa|down_9|NZ_CP009557.1_550443_552108_+	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	4	1129285-1129487	4	CRISPRCasFinder	no		csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	Orphan	TTTTAAACAATATTTGCTTTTAGGT	25	0	0	NA	NA	NA	3	3	Orphan	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA,NA|104aa|down_1|NZ_CP009557.1_1130529_1130841_+,NA|73aa|down_7|NZ_CP009557.1_1137124_1137343_-,NA|366aa|down_9|NZ_CP009557.1_1139198_1140296_+	NA|493aa|up_9|NZ_CP009557.1_1121229_1122708_+	TIGR02518, Acetaldehyde_dehydrogenase_acetylating, acetaldehyde dehydrogenase (acetylating)	NA|97aa|up_8|NZ_CP009557.1_1123062_1123353_+	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain	NA|259aa|up_7|NZ_CP009557.1_1123430_1124207_+	COG4812, EutT, Ethanolamine utilization cobalamin adenosyltransferase [Amino acid transport and metabolism]	NA|212aa|up_6|NZ_CP009557.1_1124216_1124852_+	PRK15070, PRK15070, phosphate propanoyltransferase	NA|253aa|up_5|NZ_CP009557.1_1125059_1125818_+	TIGR02536, putative_ethanolamine_utilization_protein, ethanolamine utilization protein	NA|91aa|up_4|NZ_CP009557.1_1125964_1126237_+	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome	NA|185aa|up_3|NZ_CP009557.1_1126238_1126793_+	TIGR02526, putative_ethanolamine_utilization_protein, PduT-like ethanolamine utilization protein	NA|366aa|up_2|NZ_CP009557.1_1126843_1127941_+	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional	NA|160aa|up_1|NZ_CP009557.1_1127937_1128417_+	pfam06249, EutQ, Ethanolamine utilisation protein EutQ	NA|159aa|up_0|NZ_CP009557.1_1128783_1129260_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|182aa|down_0|NZ_CP009557.1_1129692_1130238_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|104aa|down_1|NZ_CP009557.1_1130529_1130841_+	NA	NA|547aa|down_2|NZ_CP009557.1_1131153_1132794_+	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|207aa|down_3|NZ_CP009557.1_1132875_1133496_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|142aa|down_4|NZ_CP009557.1_1133937_1134363_+	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	NA|604aa|down_5|NZ_CP009557.1_1134693_1136505_+	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|153aa|down_6|NZ_CP009557.1_1136501_1136960_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|73aa|down_7|NZ_CP009557.1_1137124_1137343_-	NA	NA|262aa|down_8|NZ_CP009557.1_1138054_1138840_-	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|366aa|down_9|NZ_CP009557.1_1139198_1140296_+	NA
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	5	1711152-1712637	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	 Type II-B, or Type II-C?,Type II-A,Type II-B,Type II-C	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	36,36,36	0	0	NA	NA	NA:NA:NA	22,22,12	22	TypeII-B,TypeII-A,TypeII-B,TypeII-C,orTypeII-C?	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA|328aa|up_9|NZ_CP009557.1_1694427_1695411_-,NA|97aa|down_3|NZ_CP009557.1_1717361_1717652_-,NA|191aa|down_4|NZ_CP009557.1_1717653_1718226_-,NA|196aa|down_6|NZ_CP009557.1_1721329_1721917_-,NA|100aa|down_9|NZ_CP009557.1_1727740_1728040_-	NA|328aa|up_9|NZ_CP009557.1_1694427_1695411_-	NA	NA|241aa|up_8|NZ_CP009557.1_1695929_1696652_-	pfam12811, BaxI_1, Bax inhibitor 1 like	NA|113aa|up_7|NZ_CP009557.1_1696831_1697170_-	cd16159, ES, Estrone sulfatase	NA|469aa|up_6|NZ_CP009557.1_1697193_1698600_-	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|300aa|up_5|NZ_CP009557.1_1698592_1699492_-	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|389aa|up_4|NZ_CP009557.1_1699641_1700808_-	cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria	NA|484aa|up_3|NZ_CP009557.1_1701137_1702589_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|953aa|up_2|NZ_CP009557.1_1703194_1706053_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|677aa|up_1|NZ_CP009557.1_1706381_1708412_-	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein	NA|849aa|up_0|NZ_CP009557.1_1708526_1711073_-	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein	cas2|103aa|down_0|NZ_CP009557.1_1712687_1712996_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_CP009557.1_1713003_1713903_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1066aa|down_2|NZ_CP009557.1_1713903_1717101_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|97aa|down_3|NZ_CP009557.1_1717361_1717652_-	NA	NA|191aa|down_4|NZ_CP009557.1_1717653_1718226_-	NA	NA|1029aa|down_5|NZ_CP009557.1_1718230_1721317_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|196aa|down_6|NZ_CP009557.1_1721329_1721917_-	NA	NA|671aa|down_7|NZ_CP009557.1_1721927_1723940_-	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|1221aa|down_8|NZ_CP009557.1_1724061_1727724_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|100aa|down_9|NZ_CP009557.1_1727740_1728040_-	NA
GCF_001304735.1_ASM130473v1	NZ_CP009557	Clostridium perfringens strain FORC_003, complete genome	6	2412369-2412481	6	CRISPRCasFinder	no		csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	Orphan	TTCTATTTAAATCTATTACTTTACATAA	28	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,c2c9_V-U4,cas2,csa3,cas3,DinG,cas1,cas9	NA,NA|121aa|down_0|NZ_CP009557.1_2412552_2412915_-,NA|116aa|down_2|NZ_CP009557.1_2413756_2414104_-,NA|147aa|down_3|NZ_CP009557.1_2414100_2414541_-,NA|204aa|down_4|NZ_CP009557.1_2414500_2415112_-,NA|117aa|down_5|NZ_CP009557.1_2415086_2415437_-,NA|99aa|down_6|NZ_CP009557.1_2415483_2415780_-,NA|171aa|down_7|NZ_CP009557.1_2415914_2416427_-	NA|136aa|up_9|NZ_CP009557.1_2406168_2406576_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|NZ_CP009557.1_2406694_2407084_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_7|NZ_CP009557.1_2407168_2407666_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_6|NZ_CP009557.1_2407691_2408297_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|186aa|up_5|NZ_CP009557.1_2408311_2408869_-	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF	NA|391aa|up_4|NZ_CP009557.1_2408876_2410049_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|NZ_CP009557.1_2410059_2410446_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|NZ_CP009557.1_2410533_2410731_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|NZ_CP009557.1_2410806_2411322_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|NZ_CP009557.1_2411468_2412353_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|NZ_CP009557.1_2412552_2412915_-	NA	NA|186aa|down_1|NZ_CP009557.1_2413028_2413586_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|NZ_CP009557.1_2413756_2414104_-	NA	NA|147aa|down_3|NZ_CP009557.1_2414100_2414541_-	NA	NA|204aa|down_4|NZ_CP009557.1_2414500_2415112_-	NA	NA|117aa|down_5|NZ_CP009557.1_2415086_2415437_-	NA	NA|99aa|down_6|NZ_CP009557.1_2415483_2415780_-	NA	NA|171aa|down_7|NZ_CP009557.1_2415914_2416427_-	NA	NA|143aa|down_8|NZ_CP009557.1_2416446_2416875_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|NZ_CP009557.1_2416867_2417887_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
