The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2504349	1321704	1328935	2504349	protease	Agrobacterium_phage(16.67%)	7	NA	NA
WP_027895124.1|1321704_1322301_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.7	3.1e-55
WP_014016142.1|1322318_1323557_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.5	2.1e-143
WP_054336330.1|1323629_1325963_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.4	2.5e-177
WP_014016144.1|1325962_1326598_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_022497868.1|1326815_1327187_+	thioredoxin	NA	A0A2I2L415	Orpheovirus	30.4	2.1e-09
WP_022497869.1|1327223_1328150_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	39.7	5.6e-56
WP_014016147.1|1328191_1328935_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	34.4	9.5e-22
>prophage 2
NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2504349	1863153	1881591	2504349	transposase,integrase	Bacillus_phage(66.67%)	19	1863488:1863501	1881713:1881726
WP_054336591.1|1863153_1864149_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1863488:1863501	attL	AAGGCCGTGACGGC	NA	NA	NA	NA
WP_054336592.1|1864247_1864925_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_054336593.1|1865117_1865924_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA	NA
WP_054336594.1|1865927_1866809_-	L,D-transpeptidase/peptidoglycan binding protein	NA	NA	NA	NA	NA
WP_054336595.1|1867059_1867845_-	basic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_054337008.1|1867993_1869076_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_054336596.1|1869290_1869725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027894522.1|1869822_1870275_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_054336597.1|1870298_1870739_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_054336598.1|1870773_1871538_+	cyclase family protein	NA	NA	NA	NA	NA
WP_081009419.1|1871608_1873798_-	YadA-like family protein	NA	NA	NA	NA	NA
WP_054336600.1|1874233_1875205_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_155482874.1|1875339_1875483_+	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
WP_008860184.1|1875557_1875839_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155482875.1|1875775_1876750_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	37.0	2.4e-41
WP_054336602.1|1878329_1879445_-|integrase	site-specific integrase	integrase	A0A0M5M609	Bacillus_phage	32.9	1.7e-46
WP_155482876.1|1879624_1879915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019543803.1|1880035_1880530_-	lincosamide nucleotidyltransferase Lnu(C)	NA	A0A2K5B286	Erysipelothrix_phage	54.9	1.0e-48
WP_002837184.1|1880553_1881591_-|transposase	IS1595-like element ISSag10 family transposase	transposase	NA	NA	NA	NA
1881713:1881726	attR	GCCGTCACGGCCTT	NA	NA	NA	NA
>prophage 3
NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2504349	1916368	1923090	2504349	integrase	uncultured_Caudovirales_phage(33.33%)	12	1908040:1908055	1927931:1927946
1908040:1908055	attL	GATGCACAGGAACTGG	NA	NA	NA	NA
WP_054336644.1|1916368_1916617_+	hypothetical protein	NA	A0A2K9V3C9	Faecalibacterium_phage	70.7	3.7e-31
WP_155482904.1|1916710_1917073_+	DUF2829 domain-containing protein	NA	H7BV51	unidentified_phage	57.8	3.9e-21
WP_054336645.1|1917084_1917681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155482885.1|1917693_1918098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054336647.1|1918608_1919715_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	35.1	3.3e-55
WP_054336648.1|1919753_1920590_-	LemA family protein	NA	NA	NA	NA	NA
WP_054336649.1|1920601_1921126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054336650.1|1921173_1921668_-	helix-turn-helix transcriptional regulator	NA	A0A075LYE4	Staphylococcus_phage	41.1	3.6e-17
WP_020310129.1|1921830_1922079_+	DUF739 family protein	NA	A0A2H4JCQ4	uncultured_Caudovirales_phage	37.0	3.5e-05
WP_054337009.1|1922156_1922429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054336651.1|1922412_1922625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054336652.1|1922643_1923090_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A2H4J2I9	uncultured_Caudovirales_phage	34.5	1.0e-15
1927931:1927946	attR	GATGCACAGGAACTGG	NA	NA	NA	NA
>prophage 4
NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2504349	2045528	2052580	2504349		Synechococcus_phage(33.33%)	6	NA	NA
WP_014016575.1|2045528_2046134_-	IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	53.9	2.0e-49
WP_027895185.1|2046146_2046761_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.3	1.7e-24
WP_022497428.1|2046753_2047818_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D8KLC2	Synechococcus_phage	41.3	9.3e-63
WP_014016572.1|2047798_2049226_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	4.9e-59
WP_054336744.1|2049270_2049765_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.7	2.9e-27
WP_054336745.1|2050048_2052580_+	UvrD-helicase domain-containing protein	NA	S5M596	Bacillus_phage	22.8	8.5e-22
>prophage 5
NZ_CP009240	Megasphaera elsdenii 14-14 chromosome, complete genome	2504349	2146689	2208043	2504349	protease,transposase,tRNA	Indivirus(18.18%)	52	NA	NA
WP_054335782.1|2146689_2147145_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	40.0	2.1e-19
WP_014016478.1|2147608_2147923_+	DUF898 family protein	NA	NA	NA	NA	NA
WP_054336789.1|2147962_2149189_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	25.6	2.5e-27
WP_054336790.1|2149201_2150605_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	27.2	9.2e-42
WP_179944813.1|2150620_2151160_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_054336792.1|2151159_2152485_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_054336793.1|2152474_2154745_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	35.0	6.1e-88
WP_054336794.1|2155082_2156153_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_014016471.1|2156154_2156643_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_054336795.1|2156645_2157905_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_054336796.1|2158053_2159796_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_036204659.1|2160358_2161939_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.6	1.0e-57
WP_054336797.1|2162173_2163025_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_054336798.1|2163025_2163571_-	ribonuclease M5	NA	NA	NA	NA	NA
WP_179944796.1|2163563_2164814_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_054336800.1|2165055_2165994_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_054336801.1|2165981_2166782_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_054336802.1|2166787_2168956_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.4	5.2e-60
WP_027895084.1|2168952_2171526_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.7	1.3e-41
WP_054336803.1|2171564_2172893_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_022497604.1|2173295_2173592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_022497603.1|2173588_2174245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014016456.1|2174642_2174828_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_081009432.1|2179557_2179911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054336098.1|2180009_2181215_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155482889.1|2181200_2181578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054336806.1|2181508_2182126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054336807.1|2182458_2184063_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_027894766.1|2184390_2185515_-	DUF362 domain-containing protein	NA	NA	NA	NA	NA
WP_054336808.1|2185952_2186324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054336809.1|2186388_2186577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155482890.1|2186830_2187004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022497594.1|2187354_2189169_-	translational GTPase TypA	NA	NA	NA	NA	NA
WP_054336810.1|2189287_2189830_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_054336811.1|2189854_2191162_-	serine dehydratase subunit alpha family protein	NA	NA	NA	NA	NA
WP_014016446.1|2191348_2192275_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_014016445.1|2192264_2192612_-	YlbF family regulator	NA	NA	NA	NA	NA
WP_014016444.1|2192637_2193123_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_014016443.1|2193279_2193708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014016442.1|2193731_2194397_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_054336812.1|2194399_2195284_+	flagellin lysine-N-methylase	NA	NA	NA	NA	NA
WP_054336813.1|2195397_2195757_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_014016439.1|2196267_2197122_-	polysaccharide deacetylase family protein	NA	A0A166YGE0	Gordonia_phage	40.0	2.0e-07
WP_014016438.1|2197132_2197531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020311207.1|2197706_2197991_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_014016436.1|2198010_2198319_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_014016435.1|2198318_2198630_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_054337022.1|2199423_2200587_-	N-acetylmuramoyl-L-alanine amidase	NA	Q5YA51	Bacillus_phage	36.2	1.2e-18
WP_054337023.1|2200900_2202241_-	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_014016432.1|2202517_2203972_-	iron hydrogenase small subunit	NA	NA	NA	NA	NA
WP_054336814.1|2204166_2206032_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.8	1.4e-53
WP_054336815.1|2206231_2208043_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	39.1	1.6e-102
