assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001302605.1_ASM130260v1	NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	1	1911885-1912305	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	DEDDh,DinG,cas3,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	DEDDh,DinG,cas3,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP012091.1_1903751_1904513_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP012091.1_1904493_1905543_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP012091.1_1905539_1906019_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP012091.1_1906018_1906729_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP012091.1_1906747_1907059_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP012091.1_1907249_1907606_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP012091.1_1907623_1908229_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP012091.1_1908215_1909655_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP012091.1_1909664_1910573_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP012091.1_1910823_1911870_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP012091.1_1912389_1912683_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP012091.1_1912685_1913603_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_CP012091.1_1913602_1914307_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_CP012091.1_1914306_1915032_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP012091.1_1915041_1916100_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_CP012091.1_1916122_1916725_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_CP012091.1_1916741_1918277_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NZ_CP012091.1_1921715_1922669_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_CP012091.1_1922756_1923491_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP012091.1_1923566_1925279_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001302605.1_ASM130260v1	NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	2	2772719-2772822	2	CRISPRCasFinder	no	cas3	DEDDh,DinG,cas3,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4	Unclear	GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	35	1	1	2772754-2772787	NZ_CP012091.1_2772808-2772841	NA	1	1	Unclear	DEDDh,DinG,cas3,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4	NA|115aa|up_3|NZ_CP012091.1_2765016_2765361_-,NA|155aa|down_0|NZ_CP012091.1_2773991_2774456_-,NA|38aa|down_1|NZ_CP012091.1_2775375_2775489_-,NA|31aa|down_3|NZ_CP012091.1_2777789_2777882_-	cas3|694aa|up_9|NZ_CP012091.1_2753731_2755813_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|402aa|up_8|NZ_CP012091.1_2755848_2757054_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|up_7|NZ_CP012091.1_2757280_2758672_+	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|570aa|up_6|NZ_CP012091.1_2758792_2760502_+	pfam05170, AsmA, AsmA family	NA|773aa|up_5|NZ_CP012091.1_2760604_2762923_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_4|NZ_CP012091.1_2762934_2764317_-	PRK11462, PRK11462, putative transporter; Provisional	NA|115aa|up_3|NZ_CP012091.1_2765016_2765361_-	NA	NA|199aa|up_2|NZ_CP012091.1_2765922_2766519_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|343aa|up_1|NZ_CP012091.1_2767589_2768618_+	COG3943, COG3943, Virulence protein [General function prediction only]	NA|206aa|up_0|NZ_CP012091.1_2770335_2770953_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_CP012091.1_2773991_2774456_-	NA	NA|38aa|down_1|NZ_CP012091.1_2775375_2775489_-	NA	NA|227aa|down_2|NZ_CP012091.1_2776107_2776788_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|31aa|down_3|NZ_CP012091.1_2777789_2777882_-	NA	NA|909aa|down_4|NZ_CP012091.1_2777903_2780630_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_5|NZ_CP012091.1_2780849_2781545_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_6|NZ_CP012091.1_2782050_2782953_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_7|NZ_CP012091.1_2782995_2783937_-	PRK09956, PRK09956, ISNCY family transposase	NA|248aa|down_8|NZ_CP012091.1_2784172_2784916_-	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|370aa|down_9|NZ_CP012091.1_2784902_2786012_-	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme
