The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	199772	204184	4793553		Escherichia_phage(50.0%)	6	NA	NA
WP_000281950.1|199772_200186_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|200202_200931_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|201122_201665_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|201812_202190_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|202262_203072_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_000497451.1|203944_204184_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 2
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	385230	458751	4793553	capsid,tail,tRNA,protease,integrase,transposase,plate	Burkholderia_virus(39.02%)	87	424249:424265	457659:457675
WP_000168626.1|385230_386505_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|387253_387859_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|387963_389469_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|390069_390705_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|390704_391397_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|391399_392020_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|392023_393082_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|393082_395104_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|395096_395675_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|395674_396256_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|396332_396773_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|396861_397077_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|397375_397501_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|397708_398749_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|398822_399824_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_077949083.1|400190_400409_-	PTS maltose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000753325.1|400529_402038_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|402140_403316_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|403515_405162_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|405329_406733_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|406729_407659_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|407734_409036_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|409146_410853_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|411005_412157_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_000924582.1|412273_412573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080045.1|412637_413369_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|413495_413831_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|413892_415275_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|415555_416128_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_024131174.1|416199_416676_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|416682_417300_-|tail	tail assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_001802272.1|417299_417803_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_024131175.1|417813_418347_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_000852585.1|419324_419903_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.3	3.2e-65
WP_001219103.1|419895_420999_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|420989_421337_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|421393_421921_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|421917_423072_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_010989167.1|423059_423275_-	membrane protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|423271_424156_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|424155_426621_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
424249:424265	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|426714_426852_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|426796_427132_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|427229_427511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034292.1|427513_428035_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
WP_000729859.1|428034_429462_-|tail	tail protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_001789770.1|429451_429706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|429702_430167_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|430166_430613_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|430614_430953_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|430962_431916_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|431930_433046_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|433260_433719_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|433721_434543_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|434523_436020_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_029246253.1|436019_437552_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|437611_438157_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|438156_438468_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|438467_438794_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|438790_439441_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|439424_440153_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|440155_440506_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_065304567.1|440749_441742_-	nucleoid-associated protein	NA	A0A291AUQ0	Sinorhizobium_phage	37.3	3.0e-55
WP_144079282.1|441785_442169_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	58.9	1.7e-27
WP_000990529.1|442346_444116_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|444126_445293_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|445295_445565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|445592_446123_+	host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|446411_446684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|446693_446996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|446992_447376_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000132655.1|447368_447584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|447580_448264_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|448260_448491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|448480_448696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000988475.1|448685_449138_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
WP_001281695.1|449109_449499_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|449680_450625_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|451151_452681_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|452691_454080_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|454254_455289_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|455705_456068_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|456054_456384_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|456418_457240_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|457508_457760_-	acid shock protein	NA	NA	NA	NA	NA
457659:457675	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|458153_458336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|458292_458751_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	903191	981392	4793553	tail,holin,head,protease,integrase,transposase,terminase	Salmonella_phage(70.0%)	92	954491:954506	994560:994575
WP_000938184.1|903191_903872_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|904079_904538_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|905201_905861_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|905947_906277_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|906273_906555_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|907291_907750_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|908881_910093_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|910150_910468_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|910512_910926_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|911099_911762_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|911856_912315_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|912350_914405_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|914528_914975_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|914993_917147_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|917133_917739_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|917955_918465_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|918819_919872_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|919943_920396_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|920581_922342_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|922410_922929_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|923028_923196_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|923449_924013_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|924009_925650_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|925654_926908_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|926922_928830_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|928842_930951_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|931049_932159_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|932155_932698_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|932863_933874_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|934081_936694_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|937710_938412_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|939333_939852_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|939866_941378_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|941377_942058_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|942054_943254_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|943254_943608_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|943848_944604_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|944662_945091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|945090_945822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|946016_946352_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|946348_947380_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|947382_947685_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|947688_948339_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|948338_950291_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|950468_950921_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|950924_951365_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|951376_952522_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|952525_953089_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|953063_953453_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|953439_953994_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|953990_954398_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|954363_954732_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
954491:954506	attL	TCGGCAATCAGTTTAT	NA	NA	NA	NA
WP_000627464.1|954773_955715_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|955726_956224_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_050192319.1|956228_957461_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	98.8	4.0e-227
WP_138010671.1|957475_958213_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|958097_959567_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|959566_960970_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|960935_961688_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|961777_962005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|962101_962479_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|962521_963061_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|963057_963672_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|963671_963953_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|963939_964329_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|964545_964995_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|965130_965256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|965654_966452_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|966441_966588_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|966584_967196_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|967404_968007_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|968341_968581_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|968765_969263_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|969273_969453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|970298_970871_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|970874_971348_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|971347_971872_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|971868_972216_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|972226_972976_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|972978_973962_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|974046_974421_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|974386_974623_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|974752_975157_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|975445_975646_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|975736_976033_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|976038_976824_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|976820_977501_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|977578_978643_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|978639_979521_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|979526_979766_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|979806_980055_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|980099_981392_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
994560:994575	attR	ATAAACTGATTGCCGA	NA	NA	NA	NA
>prophage 4
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	1052704	1060016	4793553	protease,integrase	Ralstonia_phage(16.67%)	7	1047386:1047400	1058752:1058766
1047386:1047400	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|1052704_1053082_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|1053243_1053441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|1053652_1055929_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|1055959_1056280_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|1056603_1056825_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|1056954_1058901_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1058752:1058766	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|1058897_1060016_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 5
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	1672843	1760003	4793553	plate,tail,tRNA	Salmonella_phage(40.0%)	65	NA	NA
WP_000118732.1|1672843_1674187_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|1674190_1674727_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|1674793_1675279_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|1675515_1675941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|1675912_1676314_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|1677898_1678441_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000449770.1|1678879_1681543_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|1681910_1682813_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|1682799_1683624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|1683620_1684115_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|1684130_1686014_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145232.1|1686010_1687006_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|1688600_1689332_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|1689395_1689863_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|1689859_1690582_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|1690616_1691372_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|1691443_1692811_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|1692866_1693637_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|1693714_1694515_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|1694646_1695822_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|1695926_1696841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|1696861_1697665_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|1703696_1706270_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|1706399_1707131_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|1707127_1708108_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|1708239_1708977_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|1709248_1709587_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|1709690_1709738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|1709837_1710998_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|1710958_1711867_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|1711924_1713046_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|1713055_1714126_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|1714565_1715084_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|1715076_1716297_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|1716453_1716801_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|1716841_1717609_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|1717653_1718202_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|1718220_1718469_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|1718812_1720174_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|1720339_1721131_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|1721150_1722437_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|1722557_1723115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|1723196_1723787_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|1723910_1724789_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|1724874_1726536_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|1726684_1727023_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|1727188_1727479_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|1727468_1727945_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|1728094_1728577_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237656.1|1729196_1740071_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|1740134_1741544_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|1741540_1743721_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|1743728_1744892_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|1745434_1746208_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000972389.1|1746611_1746830_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|1746920_1748021_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|1748017_1748503_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|1748499_1751577_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|1751569_1751689_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|1751703_1752006_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|1752060_1752576_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|1752585_1753758_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|1753900_1754467_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|1755150_1756266_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|1756346_1760003_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 6
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	2077381	2121084	4793553	bacteriocin,protease,transposase,tRNA	Bacillus_virus(25.0%)	48	NA	NA
WP_001204111.1|2077381_2077840_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|2078029_2079109_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|2079210_2080374_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|2080395_2081442_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|2081815_2082241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|2082266_2082845_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|2082845_2083553_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001785834.1|2083540_2084218_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|2084211_2084868_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|2084972_2085431_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|2085619_2087611_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|2087886_2088645_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|2088745_2089666_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|2089893_2091870_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|2091878_2092010_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|2092143_2092308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|2092304_2092604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|2092659_2093814_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|2094306_2095701_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856776.1|2095779_2096277_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|2096372_2097080_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|2097156_2097888_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|2097907_2098855_+	glutathione synthase	NA	NA	NA	NA	NA
WP_023888922.1|2098998_2099634_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|2099633_2100050_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|2100096_2100783_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|2100912_2101893_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|2101910_2102615_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|2102633_2103200_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|2103196_2103487_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|2103494_2104088_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|2104080_2105217_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|2105307_2106315_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|2106447_2107494_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|2107812_2108271_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|2108393_2109113_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|2109162_2109489_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|2109488_2110208_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|2110362_2111415_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|2111442_2111718_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|2111830_2112916_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|2113132_2114389_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|2116999_2117707_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|2118048_2118333_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_071525158.1|2118682_2118862_+	type VI secretion system protein	NA	NA	NA	NA	NA
WP_001141622.1|2119982_2120300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000768134.1|2120296_2120563_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|2120805_2121084_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 7
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	3060081	3151688	4793553	capsid,transposase,tail,portal,tRNA,head,terminase,integrase,lysis,plate	Salmonella_phage(63.46%)	88	3049581:3049595	3152488:3152502
3049581:3049595	attL	GCGCGCCGCCACGGC	NA	NA	NA	NA
WP_000186987.1|3060081_3061182_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000591414.1|3061555_3063400_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000201804.1|3063344_3064196_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000149789.1|3070109_3071138_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_000655746.1|3071134_3072097_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA	NA
WP_000023068.1|3072131_3073082_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	7.9e-29
WP_001775645.1|3073290_3073464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031748.1|3074040_3075225_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
WP_001275691.1|3075454_3075838_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001287521.1|3075839_3076385_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_001085926.1|3076542_3076971_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_001096676.1|3076974_3077679_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_001207203.1|3078094_3078592_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_000028882.1|3078658_3079024_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_050192330.1|3079341_3083370_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
WP_000653965.1|3083446_3087670_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.1	5.0e-67
WP_001576436.1|3087711_3088035_+	membrane protein	NA	NA	NA	NA	NA
WP_031624270.1|3088040_3088385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000359982.1|3088838_3089054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000643282.1|3089134_3090268_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA	NA
WP_000944065.1|3090264_3091035_-	thiazole synthase	NA	NA	NA	NA	NA
WP_001166848.1|3091036_3091237_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_000999774.1|3091217_3091976_-	HesA/MoeB/ThiF family protein	NA	A0A1V0SAV8	Catovirus	28.5	7.0e-12
WP_000284626.1|3091968_3092604_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_000108425.1|3092603_3094499_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_000934311.1|3094862_3095351_-	sigma D regulator	NA	NA	NA	NA	NA
WP_000373954.1|3095443_3096217_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_000137619.1|3096257_3097322_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000362359.1|3097331_3098003_+	deoxyribonuclease V	NA	A0A1V0SJW5	Klosneuvirus	28.7	2.1e-20
WP_000940092.1|3098044_3098635_+	YjaG family protein	NA	NA	NA	NA	NA
WP_001044509.1|3098821_3099094_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	5.5e-20
WP_001083923.1|3099105_3099798_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
WP_000828129.1|3099839_3100295_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA	NA
WP_001772857.1|3100548_3101946_+	two-component system sensor histidine kinase ZraS	NA	NA	NA	NA	NA
WP_000617932.1|3101951_3103277_+	sigma-54-dependent response regulator transcription factor ZraR	NA	NA	NA	NA	NA
WP_000866776.1|3103273_3104563_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_001187524.1|3104578_3106168_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.4	8.4e-68
WP_001541181.1|3112229_3113078_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000840996.1|3113184_3113523_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_000502114.1|3113630_3114089_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000972391.1|3115670_3115889_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001011760.1|3115979_3117080_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3117076_3117562_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3117558_3120636_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3120628_3120748_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3120762_3121065_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3121119_3121635_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3121644_3122817_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3122959_3123526_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_072075000.1|3123553_3123952_+|tail	phage tail protein	tail	A0A0F7LBW5	Escherichia_phage	37.5	1.3e-12
WP_001174915.1|3123954_3124395_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_000805568.1|3124366_3124960_-|tail	tail assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_000104804.1|3124959_3126474_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_001086816.1|3126470_3127076_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|3127068_3127977_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|3127963_3128323_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|3128319_3128898_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|3128966_3129413_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|3129405_3129837_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_001080928.1|3129932_3130361_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|3130357_3130735_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001069905.1|3130736_3131249_-	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000171568.1|3131229_3131445_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|3131448_3131652_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|3131651_3132116_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|3132211_3132862_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|3132865_3133924_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216264.1|3133940_3134774_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|3134916_3136683_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|3136682_3137720_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|3137754_3138495_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|3138491_3139406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|3140019_3140898_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|3141006_3141306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|3141373_3141562_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|3141715_3144130_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|3144126_3144984_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|3144980_3145208_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|3145207_3145441_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|3145508_3145850_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|3145967_3146264_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|3146271_3146781_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|3146813_3147035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|3147160_3147730_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|3147745_3147937_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|3148125_3149178_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|3149803_3149902_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|3150041_3151688_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
3152488:3152502	attR	GCGCGCCGCCACGGC	NA	NA	NA	NA
>prophage 8
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	3419143	3510846	4793553	capsid,tail,portal,head,terminase,integrase,lysis,plate	Salmonella_phage(82.0%)	103	3420316:3420332	3516076:3516092
WP_000089603.1|3419143_3420295_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
3420316:3420332	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|3420391_3420859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|3421070_3421946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|3422133_3422496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|3422452_3423367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|3423385_3424126_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|3424104_3424791_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|3424826_3425327_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|3425336_3425906_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|3425925_3428016_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|3428012_3428771_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|3429007_3429262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|3429261_3429501_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|3429530_3429893_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|3429902_3430277_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|3430273_3430927_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|3430926_3431826_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|3431815_3433294_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|3433280_3433730_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|3436720_3437107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|3437261_3437654_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|3437650_3438619_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|3438633_3440064_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|3440396_3441902_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000993574.1|3441937_3442327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|3442550_3442793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|3443197_3444445_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|3444429_3445071_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|3445281_3445824_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000018145.1|3447918_3448128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|3448145_3448598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|3448594_3448891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|3448968_3449427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|3449515_3451465_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|3451536_3452445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|3452518_3453418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|3453492_3453819_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|3453918_3454188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|3454319_3455594_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|3455813_3456191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|3456277_3456496_-	positive regulator of late gene transcription	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|3456563_3457664_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|3457660_3458146_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|3458145_3460692_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|3460918_3461038_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|3461052_3461355_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|3461409_3461925_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|3461934_3463107_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|3463209_3463428_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|3463641_3464364_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|3464561_3464969_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|3464975_3466595_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|3466591_3467197_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|3467189_3468098_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|3468084_3468444_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_048667703.1|3468440_3469019_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	98.4	4.4e-107
WP_048667705.1|3469087_3469534_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.7	2.2e-66
WP_001039961.1|3469526_3469958_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_024131238.1|3470053_3470482_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|3470478_3470856_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|3470860_3471370_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|3471350_3471566_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|3471569_3471773_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|3471772_3472237_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|3472330_3472981_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|3472984_3474049_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|3474065_3474899_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|3475041_3476808_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|3476807_3477851_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|3477899_3478595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|3478614_3479679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|3479675_3480740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|3480749_3480968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|3481063_3481297_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|3481308_3481497_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001690689.1|3481664_3484067_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.4	0.0e+00
WP_000104130.1|3484057_3484918_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|3484914_3485499_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|3485495_3485723_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|3485722_3485956_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|3486023_3486365_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|3486328_3486529_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|3486536_3487046_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|3487078_3487321_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|3487437_3488070_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|3488073_3489099_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000902197.1|3489205_3489559_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
WP_001681810.1|3490205_3490463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681808.1|3490473_3491364_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000354257.1|3491363_3492110_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|3492411_3494382_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|3494401_3495706_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|3495728_3496424_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|3496449_3497244_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|3497253_3498321_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|3498365_3500102_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_072073205.1|3500101_3502597_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|3502620_3503667_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|3503669_3504947_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_048667701.1|3505191_3505731_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|3506584_3508096_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|3508079_3509669_+	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|3509832_3510846_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3516076:3516092	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 9
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	4581835	4591006	4793553	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|4581835_4582783_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|4582766_4583498_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|4583478_4583586_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|4583645_4584377_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001785994.1|4584599_4586285_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.9	6.9e-278
WP_000598633.1|4586281_4587001_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|4587047_4587515_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|4587571_4588102_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|4588273_4588732_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|4588972_4591006_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 10
NZ_CP012091	Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 chromosome, complete genome	4793553	4666898	4677405	4793553		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|4666898_4668302_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|4668479_4669373_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|4669749_4670835_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|4670834_4671734_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_024135283.1|4671781_4672660_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
WP_000973711.1|4672660_4673212_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|4673217_4674192_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|4674207_4674981_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|4674985_4676065_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|4676091_4677405_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
