assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001296095.1_ASM129609v1	NZ_CP012343	Lactiplantibacillus plantarum strain ZS2058 chromosome, complete genome	1	375039-380326	1	CRT	no		WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	Orphan	AGNGANTCNGANTCNGACAGNNNNNN	26	0	0	NA	NA	NA	70	70	Orphan	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	NA|240aa|up_2|NZ_CP012343.1_366704_367424_-,NA|545aa|down_0|NZ_CP012343.1_381056_382691_+,NA|66aa|down_3|NZ_CP012343.1_385792_385990_+	NA|173aa|up_9|NZ_CP012343.1_357395_357914_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|279aa|up_8|NZ_CP012343.1_358028_358865_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|442aa|up_7|NZ_CP012343.1_359703_361029_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|325aa|up_6|NZ_CP012343.1_361000_361975_-	pfam00762, Ferrochelatase, Ferrochelatase	NA|461aa|up_5|NZ_CP012343.1_362306_363689_-	PRK11387, PRK11387, S-methylmethionine permease	NA|310aa|up_4|NZ_CP012343.1_363802_364732_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|499aa|up_3|NZ_CP012343.1_365132_366629_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|240aa|up_2|NZ_CP012343.1_366704_367424_-	NA	NA|397aa|up_1|NZ_CP012343.1_367634_368825_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|501aa|up_0|NZ_CP012343.1_368961_370464_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|545aa|down_0|NZ_CP012343.1_381056_382691_+	NA	NA|503aa|down_1|NZ_CP012343.1_382717_384226_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|509aa|down_2|NZ_CP012343.1_384236_385763_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|66aa|down_3|NZ_CP012343.1_385792_385990_+	NA	NA|176aa|down_4|NZ_CP012343.1_386085_386613_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|228aa|down_5|NZ_CP012343.1_386682_387366_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|809aa|down_6|NZ_CP012343.1_387828_390255_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|557aa|down_7|NZ_CP012343.1_390778_392449_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|247aa|down_8|NZ_CP012343.1_392456_393197_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|279aa|down_9|NZ_CP012343.1_393333_394170_-	cd01171, YXKO-related, B
GCF_001296095.1_ASM129609v1	NZ_CP012343	Lactiplantibacillus plantarum strain ZS2058 chromosome, complete genome	2	1769788-1770013	1	PILER-CR	no	csa3	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	Type I-A	ACTTGTCCAGAACCATCAGCCAACTGACTGACACCACTAGCCAACGCCCCAGTCTTAC	58	1	1	1769846-1769871	NZ_CP012343.1_1769762-1769787	NA	2	2	Orphan	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	NA|187aa|up_8|NZ_CP012343.1_1754381_1754942_-,NA|186aa|up_0|NZ_CP012343.1_1765999_1766557_+,NA	NA|228aa|up_9|NZ_CP012343.1_1753314_1753998_+	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|187aa|up_8|NZ_CP012343.1_1754381_1754942_-	NA	NA|198aa|up_7|NZ_CP012343.1_1755768_1756362_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|391aa|up_6|NZ_CP012343.1_1756510_1757683_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|289aa|up_5|NZ_CP012343.1_1757672_1758539_-	pfam12541, DUF3737, Protein of unknown function (DUF3737)	NA|343aa|up_4|NZ_CP012343.1_1758641_1759670_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|596aa|up_3|NZ_CP012343.1_1760307_1762095_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|584aa|up_2|NZ_CP012343.1_1762094_1763846_-	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein	NA|465aa|up_1|NZ_CP012343.1_1764115_1765510_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|186aa|up_0|NZ_CP012343.1_1765999_1766557_+	NA	NA|185aa|down_0|NZ_CP012343.1_1770776_1771331_-	COG1309, AcrR, Transcriptional regulator [Transcription]	csa3|110aa|down_1|NZ_CP012343.1_1771429_1771759_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|315aa|down_2|NZ_CP012343.1_1772256_1773201_-	smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease	NA|182aa|down_3|NZ_CP012343.1_1773277_1773823_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|176aa|down_4|NZ_CP012343.1_1774085_1774613_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|277aa|down_5|NZ_CP012343.1_1774689_1775520_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|402aa|down_6|NZ_CP012343.1_1775987_1777193_-	pfam02517, Abi, CAAX protease self-immunity	NA|541aa|down_7|NZ_CP012343.1_1777285_1778908_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|265aa|down_8|NZ_CP012343.1_1779221_1780016_-	cd07518, HAD_YbiV-Like, Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily	NA|642aa|down_9|NZ_CP012343.1_1780102_1782028_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)
GCF_001296095.1_ASM129609v1	NZ_CP012343	Lactiplantibacillus plantarum strain ZS2058 chromosome, complete genome	3	1949494-1949579	1	CRISPRCasFinder	no		WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	Orphan	TAAGAAACTTAAAGTGTCTTATT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	NA,NA	NA|471aa|up_9|NZ_CP012343.1_1937767_1939180_+	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|861aa|up_8|NZ_CP012343.1_1939450_1942033_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|95aa|up_7|NZ_CP012343.1_1942318_1942603_+	pfam08922, DUF1905, Domain of unknown function (DUF1905)	NA|122aa|up_6|NZ_CP012343.1_1942886_1943252_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|243aa|up_5|NZ_CP012343.1_1943384_1944113_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|189aa|up_4|NZ_CP012343.1_1944271_1944838_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|346aa|up_3|NZ_CP012343.1_1944964_1946002_+	cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs	NA|189aa|up_2|NZ_CP012343.1_1946150_1946717_-	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|316aa|up_1|NZ_CP012343.1_1946936_1947884_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|493aa|up_0|NZ_CP012343.1_1948000_1949479_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|200aa|down_0|NZ_CP012343.1_1949596_1950196_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|294aa|down_1|NZ_CP012343.1_1950316_1951198_-	cd01138, FeuA, Periplasmic binding protein FeuA	NA|265aa|down_2|NZ_CP012343.1_1951482_1952277_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|333aa|down_3|NZ_CP012343.1_1952273_1953272_+	pfam01032, FecCD, FecCD transport family	NA|332aa|down_4|NZ_CP012343.1_1953268_1954264_+	pfam01032, FecCD, FecCD transport family	NA|171aa|down_5|NZ_CP012343.1_1954508_1955021_+	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|298aa|down_6|NZ_CP012343.1_1955001_1955895_-	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	NA|249aa|down_7|NZ_CP012343.1_1956188_1956935_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|169aa|down_8|NZ_CP012343.1_1956951_1957458_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|279aa|down_9|NZ_CP012343.1_1957716_1958553_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
GCF_001296095.1_ASM129609v1	NZ_CP012343	Lactiplantibacillus plantarum strain ZS2058 chromosome, complete genome	4	2563734-2564693	2,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2,csa3	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	Type II-A,Type II-C,Type II-B	GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,ATAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC,GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	36,36,39,36	0	0	NA	NA	NA:NA:NA:NA	13,14,6,6	14	TypeII-A,TypeII-C,TypeII-B	WYL,DinG,DEDDh,cas3,csa3,cas9,cas1,cas2,csn2	NA|236aa|up_5|NZ_CP012343.1_2555772_2556480_+,NA	NA|247aa|up_9|NZ_CP012343.1_2550913_2551654_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|531aa|up_8|NZ_CP012343.1_2551897_2553490_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|157aa|up_7|NZ_CP012343.1_2553605_2554076_-	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|455aa|up_6|NZ_CP012343.1_2554308_2555673_+	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|236aa|up_5|NZ_CP012343.1_2555772_2556480_+	NA	NA|261aa|up_4|NZ_CP012343.1_2556504_2557287_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	cas9|1359aa|up_3|NZ_CP012343.1_2557575_2561652_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP012343.1_2561846_2562752_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP012343.1_2562729_2563035_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|NZ_CP012343.1_2563031_2563709_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|913aa|down_0|NZ_CP012343.1_2564757_2567496_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|253aa|down_1|NZ_CP012343.1_2567780_2568539_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|65aa|down_2|NZ_CP012343.1_2568581_2568776_-	pfam04024, PspC, PspC domain	NA|201aa|down_3|NZ_CP012343.1_2568841_2569444_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|158aa|down_4|NZ_CP012343.1_2569557_2570031_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|141aa|down_5|NZ_CP012343.1_2570176_2570599_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|115aa|down_6|NZ_CP012343.1_2571138_2571483_-	smart00850, LytTR, LytTr DNA-binding domain	NA|411aa|down_7|NZ_CP012343.1_2571811_2573044_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	csa3|100aa|down_8|NZ_CP012343.1_2573134_2573434_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|398aa|down_9|NZ_CP012343.1_2573498_2574692_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters
