The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	363728	410978	4809574	terminase,portal,integrase,coat,holin,lysis,protease	Salmonella_phage(61.76%)	71	354498:354514	419557:419573
354498:354514	attL	GATATTGAAATTCGCGT	NA	NA	NA	NA
WP_001043675.1|363728_364781_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
WP_001285275.1|365063_366167_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_000893231.1|366178_367429_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
WP_000051898.1|367634_368798_-|integrase	site-specific integrase	integrase	A0A2H5BFK7	Salmonella_phage	100.0	6.3e-230
WP_153246670.1|369027_369168_-	hypothetical protein	NA	A0A0M4QWX3	Salmonella_phage	91.3	5.2e-14
WP_001084858.1|369236_369764_-	DUF551 domain-containing protein	NA	E7C9P2	Salmonella_phage	100.0	1.8e-99
WP_000348980.1|369765_369957_-	hypothetical protein	NA	A0A2I6TD51	Escherichia_phage	100.0	2.1e-26
WP_000034216.1|369958_370798_-	ead/Ea22-like family protein	NA	A0A088CC42	Shigella_phage	64.8	7.8e-65
WP_000812204.1|370794_371436_-	hypothetical protein	NA	E7C9P6	Salmonella_phage	100.0	1.7e-112
WP_001214777.1|371432_371603_-	DUF2737 family protein	NA	Q76H43	Enterobacteria_phage	100.0	1.6e-25
WP_001111291.1|371613_371907_-	DUF2856 family protein	NA	Q76H42	Enterobacteria_phage	100.0	1.4e-48
WP_001253476.1|371953_372238_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_015995136.1|372237_372945_-	DNA single-strand annealing protein	NA	B8K1D9	Salmonella_phage	100.0	3.1e-139
WP_001750234.1|372941_373085_-	hypothetical protein	NA	B8K1E0	Salmonella_phage	100.0	8.4e-20
WP_001749553.1|373074_373263_-	DUF5444 family protein	NA	B8K1E1	Salmonella_phage	100.0	1.6e-31
WP_015995137.1|373243_373396_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	B8K1E2	Salmonella_phage	100.0	3.2e-25
WP_022631111.1|373719_374004_-	hypothetical protein	NA	B8K1E3	Salmonella_phage	98.9	3.2e-47
WP_000213983.1|374040_374235_-	hypothetical protein	NA	A0A075B8G0	Enterobacteria_phage	100.0	2.5e-30
WP_015995140.1|375048_375351_-	hypothetical protein	NA	B8K1E6	Salmonella_phage	100.0	7.4e-50
WP_000786968.1|375714_375924_+	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	98.6	3.5e-30
WP_015995141.1|375964_377038_-	AAA family ATPase	NA	E7C9Q8	Salmonella_phage	100.0	8.4e-205
WP_000885924.1|377176_377518_-	DUF3024 domain-containing protein	NA	E7C9Q9	Salmonella_phage	100.0	4.3e-62
WP_000712404.1|377584_378274_-	helix-turn-helix transcriptional regulator	NA	E7C9R0	Salmonella_phage	100.0	2.9e-126
WP_000182204.1|378384_378600_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
WP_001103492.1|378710_378992_+	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
WP_001125981.1|379026_379173_+	DUF2740 family protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
WP_000065659.1|379165_380065_+	hypothetical protein	NA	E7C9R4	Salmonella_phage	100.0	1.9e-157
WP_000131503.1|380054_381491_+	AAA family ATPase	NA	E7C9R5	Salmonella_phage	100.0	6.1e-275
WP_001227831.1|381567_381762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000440795.1|381761_382052_+	hypothetical protein	NA	E7C9R6	Salmonella_phage	100.0	2.2e-51
WP_000049339.1|382054_382351_+	hypothetical protein	NA	E7C9R7	Salmonella_phage	100.0	1.1e-48
WP_000811304.1|382307_382754_+	recombination protein NinB	NA	I6R0N7	Salmonella_phage	100.0	3.2e-81
WP_000679702.1|382750_382924_+	hypothetical protein	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
WP_000113765.1|382890_383067_+	NinE family protein	NA	C6ZR57	Salmonella_phage	100.0	4.6e-28
WP_001532927.1|383069_383411_+	DUF2591 family protein	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
WP_000950941.1|383403_383580_+	protein ninF	NA	E7C9S2	Salmonella_phage	100.0	6.7e-27
WP_001107939.1|383572_384178_+	recombination protein NinG	NA	E7C9S3	Salmonella_phage	100.0	7.1e-100
WP_000036320.1|384174_384399_+	hypothetical protein	NA	Q76H69	Enterobacteria_phage	100.0	6.3e-38
WP_000149882.1|384395_384599_+	phage NinH family protein	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
WP_000219133.1|384579_384759_+	hypothetical protein	NA	Q76H67	Enterobacteria_phage	100.0	1.9e-24
WP_001047566.1|384755_385529_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	100.0	8.1e-133
WP_000286100.1|385959_386163_+|holin	phage holin family protein	holin	I6R0S9	Salmonella_phage	100.0	1.1e-33
WP_024136257.1|386140_386638_+	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
WP_001687043.1|386634_387102_+|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
WP_015995148.1|387314_387845_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	100.0	1.3e-94
WP_000808099.1|388067_388310_+	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
WP_001140562.1|388313_388703_+	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
WP_001687044.1|388702_389107_+	hypothetical protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
WP_000729923.1|389110_389599_+	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
WP_022630929.1|389576_391076_+|terminase	terminase large subunit	terminase	Q76H24	Enterobacteria_phage	99.8	8.2e-307
WP_054088298.1|391075_393253_+|portal	portal protein	portal	A0A075B8I1	Enterobacteria_phage	99.9	0.0e+00
WP_000433852.1|393266_394178_+	scaffold protein	NA	A0A192Y6T4	Salmonella_phage	100.0	4.9e-161
WP_001196937.1|394177_395470_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
WP_000538670.1|395510_396071_+	hypothetical protein	NA	C6ZR11	Salmonella_phage	100.0	9.8e-104
WP_022631114.1|396054_396555_+	packaged DNA stabilization gp4 family protein	NA	I1TEJ0	Salmonella_phage	98.2	2.7e-89
WP_054088299.1|396514_397933_+	packaged DNA stabilization protein gp10	NA	E7C9U1	Salmonella_phage	98.3	9.6e-273
WP_000774927.1|397936_398638_+	hypothetical protein	NA	A0A192Y6T9	Salmonella_phage	100.0	8.8e-78
WP_000627697.1|398637_399093_+	DUF2824 family protein	NA	A0A192Y6V9	Salmonella_phage	100.0	5.2e-87
WP_021293881.1|399095_399785_+	hypothetical protein	NA	B9UDK9	Salmonella_phage	84.7	1.4e-88
WP_065312814.1|401142_402972_+	DNA transfer protein	NA	A0A2H4FNB8	Salmonella_phage	97.3	2.2e-290
WP_050068189.1|402993_403632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000151196.1|403903_404089_+	hypothetical protein	NA	I6RSG3	Salmonella_phage	100.0	1.1e-08
WP_001036007.1|404063_404273_-	hypothetical protein	NA	I6R975	Salmonella_phage	98.6	5.9e-30
WP_001283827.1|404269_404521_-	Arc family DNA-binding protein	NA	A5VW59	Enterobacteria_phage	95.1	1.2e-34
WP_001386205.1|404626_404767_+	Arc family DNA-binding protein	NA	A0A0M4S6R9	Salmonella_phage	59.1	4.4e-05
WP_040079796.1|404763_405006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001659087.1|405068_405998_+	putative antirepressor	NA	A5VW58	Enterobacteria_phage	90.9	2.9e-161
WP_054088301.1|406177_408181_+	endorhamnosidase	NA	E7C9U9	Salmonella_phage	99.6	0.0e+00
WP_000671497.1|408239_409697_-	glucosyltransferase domain-containing protein	NA	E7C9N7	Salmonella_phage	100.0	1.3e-240
WP_000703639.1|409686_410619_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
WP_000915528.1|410615_410978_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
419557:419573	attR	GATATTGAAATTCGCGT	NA	NA	NA	NA
>prophage 2
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	1018856	1027587	4809574	transposase,protease	Dickeya_phage(14.29%)	7	NA	NA
WP_001201751.1|1018856_1019975_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|1019971_1021918_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|1022047_1022269_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1022592_1022913_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|1022943_1025220_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|1025411_1025870_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_085983316.1|1026331_1027587_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 3
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	1077649	1168565	4809574	terminase,holin,tail,lysis,protease,tRNA	Salmonella_phage(58.7%)	90	NA	NA
WP_001154025.1|1077649_1078453_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1078445_1079768_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1079748_1080453_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_022630856.1|1080452_1084919_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925872.1|1085263_1087105_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1087364_1087913_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1087940_1088588_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1088649_1089840_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1090024_1091116_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1091722_1093123_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1093323_1093785_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544849.1|1094101_1095316_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893207.1|1095560_1096997_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191399.1|1097074_1098277_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_020899445.1|1098471_1099764_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
WP_000065276.1|1099808_1100057_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1100097_1100337_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_014344386.1|1100379_1101537_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
WP_020899444.1|1101499_1104700_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
WP_023139985.1|1104826_1105177_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
WP_000917559.1|1105225_1105357_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
WP_000981510.1|1105653_1106088_-	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
WP_001555460.1|1106193_1106421_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
WP_000426364.1|1106455_1106776_+	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
WP_000062943.1|1106860_1107844_+	replication protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
WP_000800012.1|1107846_1108596_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
WP_020899441.1|1108606_1108954_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
WP_000065109.1|1108950_1109409_+	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
WP_000850457.1|1109412_1109721_+	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
WP_000208142.1|1109724_1110369_+	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
WP_001536080.1|1110368_1110626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000493384.1|1110680_1111658_-	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
WP_022630855.1|1111669_1112266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000861985.1|1112857_1113091_+	DinI-like family protein	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
WP_000763780.1|1113200_1113422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929788.1|1113506_1114109_+	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
WP_001096542.1|1114317_1114929_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
WP_000801757.1|1114925_1115066_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001097242.1|1115062_1115752_+	antitermination protein	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
WP_001534733.1|1115946_1116072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1117016_1117703_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_077248428.1|1117978_1118308_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
WP_000984584.1|1118291_1118744_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
WP_024143045.1|1118761_1119208_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
WP_000867564.1|1119676_1120222_+|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
WP_020899435.1|1121342_1121675_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
WP_000725267.1|1121774_1122272_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1122388_1122922_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1123011_1123707_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1123716_1124454_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_001576012.1|1124351_1125056_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
WP_000033415.1|1125127_1128478_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
WP_000178849.1|1128516_1128759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031247858.1|1128812_1131251_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
WP_000143167.1|1131250_1131832_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001674638.1|1132307_1133276_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
WP_000334547.1|1133923_1134550_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_031603423.1|1134618_1134918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1134902_1135589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1135859_1136051_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1136477_1139090_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1139297_1140308_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1140473_1141016_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1141012_1142122_-	YcbX family protein	NA	NA	NA	NA	NA
WP_001086485.1|1142220_1144329_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1144341_1146249_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1146263_1147517_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1147521_1149162_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1149158_1149722_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1149977_1150145_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1150244_1150763_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156454.1|1150831_1152592_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1152777_1153230_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1153301_1154354_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1154710_1155220_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1155436_1156042_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1156028_1158182_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1158200_1158647_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_022630854.1|1158770_1160825_+	DNA helicase IV	NA	A0A1P8CWU5	Bacillus_phage	23.8	1.1e-08
WP_000424187.1|1160860_1161319_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1161413_1162076_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1162249_1162663_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1162707_1163025_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1163082_1164294_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1164508_1165057_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1165082_1165862_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1165910_1166192_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1166188_1166518_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1166604_1167264_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1167884_1168565_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 4
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	1957657	1964465	4809574	integrase,tail	Salmonella_phage(33.33%)	11	1952521:1952543	1962234:1962256
1952521:1952543	attL	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
WP_031247788.1|1957657_1958539_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
WP_001521334.1|1959010_1959199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|1959263_1959431_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001050882.1|1959687_1960221_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
WP_001013467.1|1960274_1960505_-	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_010989030.1|1960694_1961189_+	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
WP_176731523.1|1961260_1962103_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.3e-71
WP_000722368.1|1962476_1962830_-	YebY family protein	NA	NA	NA	NA	NA
1962234:1962256	attR	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
WP_000979702.1|1962846_1963722_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|1963722_1964097_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|1964234_1964465_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 5
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	2166436	2175601	4809574		Enterobacteria_phage(42.86%)	10	NA	NA
WP_000565905.1|2166436_2167516_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2167520_2168294_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_072100420.1|2168290_2168950_-	NAD(P)H-flavin reductase	NA	NA	NA	NA	NA
WP_001722843.1|2168979_2169282_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_000973708.1|2169287_2169839_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2169839_2170718_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2170765_2171665_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2171664_2172750_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2173126_2174020_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2174197_2175601_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 6
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	2245563	2254734	4809574	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_022631044.1|2245563_2247597_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2247837_2248296_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2248467_2248998_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2249054_2249522_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2249568_2250288_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2250284_2251970_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2252192_2252924_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2252983_2253091_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2253071_2253803_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2253786_2254734_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 7
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	2274141	2340533	4809574	lysis,tail,holin	Salmonella_phage(31.58%)	58	NA	NA
WP_000989296.1|2274141_2274837_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2274990_2275875_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2276051_2276771_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_000605187.1|2276767_2277013_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_001136409.1|2277217_2278459_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2278452_2279688_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2279762_2280773_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2280788_2282309_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_001036943.1|2282442_2283441_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2283939_2284962_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_001526153.1|2285111_2286254_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2286268_2286937_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2287265_2288123_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2288111_2288501_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2288505_2289873_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_000022915.1|2290089_2290977_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2291009_2292332_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2292375_2294367_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2294712_2296182_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2296371_2297235_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2297355_2298405_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2298483_2299341_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2299405_2301094_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2301110_2302049_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2302048_2303179_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2303547_2304729_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2304793_2305459_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2305460_2305583_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2305970_2306225_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2306548_2307121_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2307333_2308320_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2308349_2309069_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2309482_2310055_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2310380_2311937_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_000561748.1|2312043_2313849_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2313858_2314953_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137764.1|2314952_2315978_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2315979_2317569_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2317572_2317917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2318307_2319498_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2319525_2320221_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2320372_2322133_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2322257_2322542_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2322650_2323271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2323298_2324306_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2324485_2324713_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2324744_2326505_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2326785_2327289_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2327316_2327607_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2327954_2329784_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2329837_2330281_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2330658_2331186_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2331188_2332430_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2333022_2333352_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_010989045.1|2335007_2335376_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_001202279.1|2335390_2336380_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
WP_001113462.1|2339241_2339445_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2339741_2340533_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 8
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	2718454	2727768	4809574	tail,plate	Salmonella_phage(28.57%)	8	NA	NA
WP_000790154.1|2718454_2720254_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_024144984.1|2720884_2721556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046891335.1|2722098_2723232_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	32.5	1.2e-36
WP_000267959.1|2723307_2723481_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	65.1	1.7e-11
WP_149677107.1|2723470_2724076_-|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	94.7	1.2e-99
WP_054088329.1|2724045_2725395_-	hypothetical protein	NA	A0A1B0VFW4	Salmonella_phage	88.8	3.1e-220
WP_046891337.1|2726072_2726699_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
WP_077944633.1|2726682_2727768_-|plate	baseplate J/gp47 family protein	plate	A0A0U2RJZ0	Escherichia_phage	66.7	4.8e-139
>prophage 9
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	2737918	2764103	4809574	integrase,holin,terminase	Salmonella_phage(68.97%)	32	2747028:2747042	2765571:2765585
WP_001110972.1|2737918_2738950_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	45.5	1.5e-73
WP_023181116.1|2738967_2739840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046891343.1|2739860_2741435_-	NUDIX hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	1.0e-20
WP_010835735.1|2741435_2742311_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	1.2e-55
WP_046891344.1|2742282_2743713_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.9	5.8e-92
WP_010835733.1|2743712_2744984_-	hypothetical protein	NA	A0A0U2JTW9	Escherichia_phage	38.3	5.1e-84
WP_046891345.1|2744973_2745948_-|terminase	terminase small subunit	terminase	C5IHM0	Burkholderia_virus	37.7	7.3e-30
WP_046891346.1|2746007_2746412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046891347.1|2746401_2746953_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
WP_046891348.1|2746949_2747576_-	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	80.2	1.3e-93
2747028:2747042	attL	TGTAACGCGTACCAT	NA	NA	NA	NA
WP_046891349.1|2747578_2747926_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	78.5	1.1e-44
WP_001749676.1|2748324_2749122_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	6.8e-151
WP_001617856.1|2749111_2749258_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_046891350.1|2749254_2749866_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_046891351.1|2750074_2750677_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_001217670.1|2751011_2751251_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_052753786.1|2751770_2752328_-	DUF551 domain-containing protein	NA	K7P7E4	Enterobacteria_phage	50.5	1.1e-38
WP_046891353.1|2752685_2753159_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	4.3e-68
WP_046891354.1|2753158_2753941_-	hypothetical protein	NA	A0A1V0E5L5	Salmonella_phage	92.8	8.6e-66
WP_031607904.1|2753937_2754339_-	ParB/RepB/Spo0J family partition protein	NA	S4TTI6	Salmonella_phage	99.2	6.4e-73
WP_000788825.1|2754383_2755085_-	hypothetical protein	NA	A0A0M3ULE2	Salmonella_phage	99.6	8.4e-129
WP_000024046.1|2755081_2755987_-	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	99.7	9.1e-176
WP_001574095.1|2756078_2756453_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869364.1|2756418_2756655_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
WP_001009038.1|2756784_2757189_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	100.0	4.2e-72
WP_000917563.1|2757585_2757744_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	100.0	2.4e-23
WP_077941501.1|2757765_2758116_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.8	1.6e-59
WP_046891356.1|2758242_2761170_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	98.6	0.0e+00
WP_077941502.1|2761132_2762290_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	1.0e-216
WP_001237031.1|2762332_2762572_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_054088320.1|2762581_2762896_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	84.8	6.6e-41
WP_001007937.1|2762873_2764103_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
2765571:2765585	attR	TGTAACGCGTACCAT	NA	NA	NA	NA
>prophage 10
NZ_CP012681	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 chromosome, complete genome	4809574	4370071	4390488	4809574	holin,tail,plate	Burkholderia_phage(45.0%)	25	NA	NA
WP_000587738.1|4370071_4370800_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_010989092.1|4370996_4371287_-	membrane protein	NA	NA	NA	NA	NA
WP_000084331.1|4371535_4371991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526208.1|4371987_4372593_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000368196.1|4372597_4374343_-|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_000359500.1|4374345_4374978_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4374970_4376086_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4376076_4376436_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4376599_4378147_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4378146_4379076_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4379072_4379435_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4379762_4380485_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4380494_4381538_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4381525_4381735_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4381734_4382688_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_022630954.1|4382687_4385042_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	1.2e-65
WP_001185654.1|4385138_4385267_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4385226_4385544_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4385595_4386120_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4386119_4387547_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4387536_4387734_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000777266.1|4388344_4388659_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270441.1|4388671_4389277_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
WP_001226442.1|4389279_4389567_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4390140_4390488_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 1
NZ_CP012683	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 plasmid p33673_IncF, complete sequence	112639	3931	65541	112639	integrase,transposase	Escherichia_phage(33.33%)	44	367:380	24461:24474
367:380	attL	TGCTTGAAAAACTG	NA	NA	NA	NA
WP_172440212.1|3931_5145_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	96.3	6.3e-164
WP_054088337.1|5279_5645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074152073.1|5889_6126_+	colicin V immunity protein	NA	NA	NA	NA	NA
WP_122997259.1|6583_8698_-	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	26.5	1.6e-34
WP_000489608.1|8672_9947_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000008826.1|10389_13356_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	38.3	7.3e-182
WP_000904945.1|13336_13960_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	49.7	3.4e-41
WP_001067845.1|14363_15068_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	4.0e-139
WP_001339197.1|16399_17608_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_000557619.1|17775_18033_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_001398199.1|17965_18367_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_001262766.1|18650_20423_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_024144810.1|22475_22742_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_149018855.1|23048_23270_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
WP_001066942.1|23390_24131_+|integrase	site-specific integrase	integrase	I3WFA4	Macacine_betaherpesvirus	57.6	2.0e-24
WP_000361612.1|24415_25393_-	replication initiation protein	NA	J9Q7H0	Salmonella_phage	59.2	3.9e-100
24461:24474	attR	CAGTTTTTCAAGCA	NA	NA	NA	NA
WP_032333019.1|26178_26991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000081352.1|28736_29669_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_001373486.1|29655_31059_-	S-methylmethionine permease	NA	NA	NA	NA	NA
WP_149677109.1|31266_32283_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	6.4e-186
WP_000976514.1|32697_33843_+	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
WP_001190712.1|34280_34502_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
WP_001617892.1|34684_36241_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.7	3.2e-104
WP_001617890.1|36237_37521_+	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.5	2.2e-10
WP_039002890.1|37642_40759_+	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	24.0	2.9e-27
WP_000991832.1|41806_42739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000246636.1|42742_43738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000350635.1|44202_46341_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001044768.1|46502_46919_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_001261287.1|46915_47146_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000545983.1|50831_51965_+	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_000642771.1|51984_52269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054088342.1|54745_55027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021512928.1|55934_57260_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	6.5e-114
WP_001067855.1|57408_58113_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000239529.1|58691_58967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633913.1|58960_59605_-	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	43.0	1.9e-39
WP_001103690.1|59826_60798_+	hypothetical protein	NA	A0A222YXF2	Escherichia_phage	42.9	7.4e-67
WP_000340829.1|60802_61195_+	plasmid partitioning/stability family protein	NA	NA	NA	NA	NA
WP_000457518.1|61199_62471_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	60.5	1.9e-142
WP_000109071.1|62470_62908_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
WP_000618110.1|62904_63153_-	DinI-like family protein	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
WP_001348615.1|63570_64473_+	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
WP_000086185.1|64857_65541_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.9	5.1e-30
>prophage 1
NZ_CP012682	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 plasmid p33676_IncA/C, complete sequence	161461	13693	68333	161461	transposase,integrase	Escherichia_phage(22.22%)	43	13630:13689	24632:25453
13630:13689	attL	CGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCT	NA	NA	NA	NA
WP_001067858.1|13693_14398_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_063102497.1|14591_14978_+	bleomycin binding protein	NA	NA	NA	NA	NA
WP_000084745.1|15297_15690_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_001206356.1|16174_16966_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_001336345.1|16971_17262_-	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
WP_001083725.1|17373_17871_-	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
WP_054088330.1|18015_18963_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	44.0	1.5e-64
WP_001067858.1|18996_19701_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000248278.1|20700_20928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000951934.1|20951_21143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587837.1|21624_22167_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000557454.1|22179_23040_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
WP_001067858.1|23922_24627_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_001132147.1|24800_25151_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	40.0	4.8e-08
WP_000843496.1|25184_25382_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_001398208.1|25422_27900_-	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.4	2.9e-83
24632:25453	attR	AGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCGTCTCGATTATCCGTTACCAGCCACAGCAAGACTCAGTTCACCTTTCAATCCTGCAAGACTTAACCCGGTATCGGGAAAAGTGAGTCCCCATAATGGCATTGATTATTCCATGCCCATGAACACGAAAATAGTCAGCGTCATCGACGGAAAAATCACCCGGGCCGAATACAACAGTACCATGGGATATTTTGTTGAAGTAACGGGAAAAGCCGGTGTTAAAACTCGCTATCTCCACCTCAATAAAATACTCGTTACTAAAGGGGCCAGAGTTACCCGGGGAGGTGCTATTGCGTTATCCGGTAACAGCGGACGTTCATCCGGTCCTCATTTACATTATGAGCTGGTCATCAATAACAATCCTGTTAATTCACTGGCGTTCCGGGCATCGGCACCCGCTGATAACAAACTCGAACAGCATGCCTTTGCGCATGCCAGAGACTACGAACGATACCTGGACTGATAACGGGACCGCGACGCGGCCCCGTTTGCCGGATTAATTTTTTTTATTGTTTTCACTTCCGTGATGTTGGTGATCCCCATGCCCTCCGTGGCCGTGGAAAAGATGCATTAGCGGGCAGACCAGCAATAACAGATATGGCCAGTAACCTGCCACATGTGACCAGTGTTCTCGCAGGAGGGCAAATGCCGCGATCGCGGCGACAGCAATAAGCGCATAGGTGGTACTTTTCATACTGGACTCCTTCTGTTCATAACAGACCCTTCACTCAGTGTTATTTCCCGAGCCTGACACTTTTCAGACGC	NA	NA	NA	NA
WP_000758221.1|27996_28437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022630998.1|28523_31670_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.4	1.5e-60
WP_001398209.1|31680_32973_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
WP_001246155.1|33086_33440_-	cation efflux system protein CusF	NA	NA	NA	NA	NA
WP_000475512.1|33467_34853_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA	NA
WP_000697969.1|35042_35723_+	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	36.0	2.1e-31
WP_022630999.1|35715_37191_+	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.4e-27
WP_000790483.1|37441_37873_+	silver-binding protein SilE	NA	NA	NA	NA	NA
WP_000694953.1|38016_38367_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	54.3	1.9e-20
WP_001148756.1|40299_41274_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_000796235.1|42204_42876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000639434.1|46411_46693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022631019.1|47601_48927_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	1.9e-113
WP_000612626.1|49832_50180_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
WP_000817038.1|55765_56737_-	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	86.9	1.4e-150
WP_000523812.1|56736_57903_-	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.7	3.0e-224
WP_000200070.1|58643_59654_+	replication initiation protein	NA	J9Q7H0	Salmonella_phage	54.3	3.0e-87
WP_000427623.1|60489_61494_-|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
WP_000429836.1|61572_62007_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001294663.1|62078_62429_+	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_000732292.1|62442_62718_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_001340589.1|62753_63176_+	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000105636.1|63227_64922_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
WP_001277456.1|64939_65302_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000993386.1|65298_65535_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001300294.1|65570_66239_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_001067855.1|67628_68333_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
NZ_CP012682	Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 plasmid p33676_IncA/C, complete sequence	161461	75439	114782	161461	transposase,integrase	Escherichia_phage(25.0%)	47	67628:67687	113469:114226
67628:67687	attL	CATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTG	NA	NA	NA	NA
WP_000845048.1|75439_76453_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_000454193.1|76655_77006_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001067858.1|77215_77920_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_001049717.1|78248_78875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001326174.1|79296_79674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001231464.1|79997_80660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000869297.1|80659_81037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122507.1|81046_81493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743449.1|81502_82132_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
WP_000332868.1|82088_82673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000178857.1|82683_84549_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_001326173.1|84545_87518_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001249395.1|87685_88303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001191890.1|88284_88518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000366823.1|88517_90710_+	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	29.4	9.9e-43
WP_000467110.1|90724_91213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001326171.1|91303_91603_-	hypothetical protein	NA	A0A0K1LLW2	Caulobacter_phage	55.4	3.6e-20
WP_000464630.1|91814_92432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000268552.1|92487_93144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000936897.1|93143_94571_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
WP_000647188.1|94574_95075_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	38.4	9.5e-18
WP_001447539.1|95083_95395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001326170.1|95400_95832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344149.1|95899_96574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044823.1|96548_96830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001125904.1|96822_97200_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	1.7e-22
WP_000939033.1|97526_97670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000074431.1|97761_98397_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_000703827.1|98449_98722_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001207227.1|98770_99952_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
WP_001151304.1|99955_100741_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
WP_000338945.1|100914_101226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001043260.1|101532_102348_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_001082319.1|102408_103212_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000480968.1|103211_104048_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_000844627.1|104353_104596_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000164043.1|104627_105278_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000804063.1|105383_106583_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_001255015.1|106849_107155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000214123.1|107182_108397_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	3.2e-19
WP_001447541.1|108613_109498_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001120888.1|109528_111022_-|transposase	IS91-like element ISVsa3 family transposase	transposase	NA	NA	NA	NA
WP_000743213.1|111232_111457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001366550.1|111453_112191_-	recombinase family protein	NA	NA	NA	NA	NA
WP_001044210.1|112676_112817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|112822_113527_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|114077_114782_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
113469:114226	attR	CAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCCGAAAAACCACGTTAAGAAAGCAACCTTCTGAAAAGGCGACGTTTATCAGTTTTTTTTCCGGCCATAAAGGGGGCGGAAATTATTCCCTGCACGGGTATTCGCAAGGATTTCGGTAGTGCTCTGGCTCTGCCCCCCATAACCTGGCGGACAGAGCATGATTGGGAAAGCGGTACCCTCACGGCAGAAACGATTGACGCAGGCTATATTTCTATTATTCTGGAAATATAGATAAAGGAGGTATTATGGATTTAAACACTGCTGCAAACGCACTTCGAGAACTGGGCCACCCGACACGTCTCAGCATATACCGGGAGCTGGTCAGGGCGGGTCATGAAGGCCTGCCGGTTGGCGAACTGCAGAAGCACCTTGAGATTCCTGCCTCCACGCTCAGCCATCATCTTTCAGCGCTGATATCCGCTGGACGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTG	NA	NA	NA	NA
