assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001281565.1_ASM128156v1	NZ_CP012675	Proteus mirabilis strain CYPV1 chromosome, complete genome	1	2303102-2303257	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	NA|546aa|up_6|NZ_CP012675.1_2293583_2295221_-,NA|115aa|down_1|NZ_CP012675.1_2305831_2306176_-,NA|271aa|down_3|NZ_CP012675.1_2306867_2307680_-,NA|107aa|down_4|NZ_CP012675.1_2307648_2307969_-,NA|163aa|down_5|NZ_CP012675.1_2307981_2308470_-,NA|153aa|down_7|NZ_CP012675.1_2310858_2311317_-,NA|151aa|down_8|NZ_CP012675.1_2311376_2311829_-	NA|187aa|up_9|NZ_CP012675.1_2291258_2291819_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_8|NZ_CP012675.1_2291881_2292739_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_7|NZ_CP012675.1_2292925_2293504_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|546aa|up_6|NZ_CP012675.1_2293583_2295221_-	NA	NA|419aa|up_5|NZ_CP012675.1_2295820_2297077_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP012675.1_2297429_2299868_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP012675.1_2299879_2300497_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP012675.1_2300500_2301277_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP012675.1_2301392_2301935_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP012675.1_2302503_2302683_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP012675.1_2303997_2304654_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|115aa|down_1|NZ_CP012675.1_2305831_2306176_-	NA	NA|231aa|down_2|NZ_CP012675.1_2306172_2306865_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_3|NZ_CP012675.1_2306867_2307680_-	NA	NA|107aa|down_4|NZ_CP012675.1_2307648_2307969_-	NA	NA|163aa|down_5|NZ_CP012675.1_2307981_2308470_-	NA	NA|768aa|down_6|NZ_CP012675.1_2308472_2310776_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_7|NZ_CP012675.1_2310858_2311317_-	NA	NA|151aa|down_8|NZ_CP012675.1_2311376_2311829_-	NA	NA|496aa|down_9|NZ_CP012675.1_2311839_2313327_-	pfam11863, DUF3383, Protein of unknown function (DUF3383)
GCF_001281565.1_ASM128156v1	NZ_CP012675	Proteus mirabilis strain CYPV1 chromosome, complete genome	2	2379748-2380021	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cse2gr11,cas8e	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,ATCCCCGTATACACGGGGAACAC,CGGTTCATCCCCGTATACACGGGGAACAC	29,23,29	0	0	NA	NA	I-E:NA:I-E	4,4,3	4	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	NA,NA	NA|194aa|up_9|NZ_CP012675.1_2366983_2367565_+	PRK03826, PRK03826, 5'-nucleotidase; Provisional	NA|610aa|up_8|NZ_CP012675.1_2367626_2369456_-	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]	NA|221aa|up_7|NZ_CP012675.1_2369565_2370228_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_6|NZ_CP012675.1_2370262_2370757_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_5|NZ_CP012675.1_2370897_2371353_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_4|NZ_CP012675.1_2371744_2372947_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_3|NZ_CP012675.1_2373024_2375169_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_2|NZ_CP012675.1_2375504_2375648_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP012675.1_2375878_2378278_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP012675.1_2378355_2379579_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP012675.1_2380079_2380376_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP012675.1_2380378_2381299_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP012675.1_2381299_2381977_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP012675.1_2381976_2382714_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cse2gr11|196aa|down_4|NZ_CP012675.1_2383819_2384407_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_5|NZ_CP012675.1_2384393_2385992_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|419aa|down_6|NZ_CP012675.1_2389695_2390952_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_7|NZ_CP012675.1_2390962_2391250_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_8|NZ_CP012675.1_2391279_2391723_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_9|NZ_CP012675.1_2391949_2392996_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_001281565.1_ASM128156v1	NZ_CP012675	Proteus mirabilis strain CYPV1 chromosome, complete genome	3	2388927-2389565	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cse2gr11,cas8e	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	NA,NA	NA|715aa|up_9|NZ_CP012675.1_2373024_2375169_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_8|NZ_CP012675.1_2375504_2375648_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_7|NZ_CP012675.1_2375878_2378278_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_6|NZ_CP012675.1_2378355_2379579_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_5|NZ_CP012675.1_2380079_2380376_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_4|NZ_CP012675.1_2380378_2381299_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_3|NZ_CP012675.1_2381299_2381977_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_2|NZ_CP012675.1_2381976_2382714_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cse2gr11|196aa|up_1|NZ_CP012675.1_2383819_2384407_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_0|NZ_CP012675.1_2384393_2385992_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|419aa|down_0|NZ_CP012675.1_2389695_2390952_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP012675.1_2390962_2391250_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP012675.1_2391279_2391723_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP012675.1_2391949_2392996_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP012675.1_2392992_2393535_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP012675.1_2393731_2394346_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP012675.1_2394410_2395316_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP012675.1_2395335_2395917_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP012675.1_2396038_2397556_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP012675.1_2397586_2398078_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_001281565.1_ASM128156v1	NZ_CP012675	Proteus mirabilis strain CYPV1 chromosome, complete genome	4	2633285-2633427	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cse2gr11,cas8e,RT	NA|74aa|up_7|NZ_CP012675.1_2623958_2624180_+,NA|49aa|up_1|NZ_CP012675.1_2631224_2631371_+,NA|68aa|up_0|NZ_CP012675.1_2631371_2631575_+,NA	NA|219aa|up_9|NZ_CP012675.1_2622039_2622696_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|300aa|up_8|NZ_CP012675.1_2622856_2623756_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_7|NZ_CP012675.1_2623958_2624180_+	NA	NA|245aa|up_6|NZ_CP012675.1_2624842_2625577_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_5|NZ_CP012675.1_2625667_2626291_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_4|NZ_CP012675.1_2626459_2627320_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_3|NZ_CP012675.1_2627411_2627783_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NZ_CP012675.1_2627953_2630551_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|49aa|up_1|NZ_CP012675.1_2631224_2631371_+	NA	NA|68aa|up_0|NZ_CP012675.1_2631371_2631575_+	NA	NA|476aa|down_0|NZ_CP012675.1_2645819_2647247_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP012675.1_2647448_2649314_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP012675.1_2649326_2651993_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|257aa|down_3|NZ_CP012675.1_2652156_2652927_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP012675.1_2653253_2653796_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP012675.1_2654006_2654450_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP012675.1_2654549_2655653_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP012675.1_2655649_2656849_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP012675.1_2657126_2657741_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP012675.1_2657743_2658496_+	PRK05287, PRK05287, cell division protein ZapD
