assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001281465.1_ASM128146v1	NZ_CP010517	Cupriavidus gilardii CR3 chromosome 2, complete sequence	1	880605-880706	1	CRISPRCasFinder	no		DEDDh,csa3	Orphan	GCCGCGACGGCCTGCTCCCTCTCCCGC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas3	NA|190aa|up_1|NZ_CP010517.1_878918_879488_-,NA|561aa|down_7|NZ_CP010517.1_887646_889329_+,NA|157aa|down_8|NZ_CP010517.1_889370_889841_+	NA|382aa|up_9|NZ_CP010517.1_870211_871357_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|299aa|up_8|NZ_CP010517.1_871353_872250_+	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|317aa|up_7|NZ_CP010517.1_872311_873262_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|233aa|up_6|NZ_CP010517.1_873297_873996_-	PRK12828, PRK12828, short chain dehydrogenase; Provisional	NA|158aa|up_5|NZ_CP010517.1_874165_874639_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|358aa|up_4|NZ_CP010517.1_874901_875975_+	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|462aa|up_3|NZ_CP010517.1_876171_877557_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|401aa|up_2|NZ_CP010517.1_877661_878864_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|190aa|up_1|NZ_CP010517.1_878918_879488_-	NA	NA|287aa|up_0|NZ_CP010517.1_879607_880468_-	pfam03961, FapA, Flagellar Assembly Protein A	NA|288aa|down_0|NZ_CP010517.1_881306_882170_-	sd00006, TPR, Tetratricopeptide repeat	NA|294aa|down_1|NZ_CP010517.1_882166_883048_-	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|268aa|down_2|NZ_CP010517.1_883276_884080_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|218aa|down_3|NZ_CP010517.1_884147_884801_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|251aa|down_4|NZ_CP010517.1_884841_885594_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|233aa|down_5|NZ_CP010517.1_885675_886374_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|321aa|down_6|NZ_CP010517.1_886618_887581_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|561aa|down_7|NZ_CP010517.1_887646_889329_+	NA	NA|157aa|down_8|NZ_CP010517.1_889370_889841_+	NA	NA|170aa|down_9|NZ_CP010517.1_889749_890259_-	pfam13628, DUF4142, Domain of unknown function (DUF4142)
GCF_001281465.1_ASM128146v1	NZ_CP010517	Cupriavidus gilardii CR3 chromosome 2, complete sequence	2	1787414-1787544	2	CRISPRCasFinder	no		DEDDh,csa3	Orphan	GCAGTGGTCACCTTCTTCGCAGC	23	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,DEDDh,WYL,cas3	NA,NA	NA|244aa|up_9|NZ_CP010517.1_1774265_1774997_-	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|908aa|up_8|NZ_CP010517.1_1775140_1777864_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|669aa|up_7|NZ_CP010517.1_1778123_1780130_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|349aa|up_6|NZ_CP010517.1_1780341_1781388_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|285aa|up_5|NZ_CP010517.1_1781764_1782619_+	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids	NA|184aa|up_4|NZ_CP010517.1_1782721_1783273_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|320aa|up_3|NZ_CP010517.1_1783427_1784387_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|257aa|up_2|NZ_CP010517.1_1784431_1785202_+	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional	NA|297aa|up_1|NZ_CP010517.1_1785233_1786124_-	pfam04072, LCM, Leucine carboxyl methyltransferase	NA|339aa|up_0|NZ_CP010517.1_1786270_1787287_-	cd04788, HTH_NolA-AlbR, Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR	NA|159aa|down_0|NZ_CP010517.1_1789056_1789533_+	pfam12732, YtxH, YtxH-like protein	NA|324aa|down_1|NZ_CP010517.1_1789620_1790592_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|612aa|down_2|NZ_CP010517.1_1790980_1792816_+	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|312aa|down_3|NZ_CP010517.1_1792951_1793887_+	PRK11233, PRK11233, nitrogen assimilation transcriptional regulator; Provisional	NA|224aa|down_4|NZ_CP010517.1_1793907_1794579_-	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|232aa|down_5|NZ_CP010517.1_1794881_1795577_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|226aa|down_6|NZ_CP010517.1_1795610_1796288_+	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|441aa|down_7|NZ_CP010517.1_1796284_1797607_+	PRK07056, PRK07056, amidase; Provisional	NA|446aa|down_8|NZ_CP010517.1_1797746_1799084_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|280aa|down_9|NZ_CP010517.1_1799085_1799925_-	pfam12852, Cupin_6, Cupin
GCF_001281465.1_ASM128146v1	NZ_CP010517	Cupriavidus gilardii CR3 chromosome 2, complete sequence	3	2037936-2038262	1	PILER-CR	no		DEDDh,csa3	Orphan	CGCAGAAACGGGTACG	16	0	0	NA	NA	NA	6	6	Orphan	csa3,DinG,DEDDh,WYL,cas3	NA|61aa|up_4|NZ_CP010517.1_2031738_2031921_+,NA|120aa|up_3|NZ_CP010517.1_2032809_2033169_+,NA|109aa|up_2|NZ_CP010517.1_2034764_2035091_-,NA	NA|572aa|up_9|NZ_CP010517.1_2020714_2022430_-	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103	NA|421aa|up_8|NZ_CP010517.1_2024807_2026070_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|731aa|up_7|NZ_CP010517.1_2026461_2028654_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|525aa|up_6|NZ_CP010517.1_2028745_2030320_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|324aa|up_5|NZ_CP010517.1_2030490_2031462_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|61aa|up_4|NZ_CP010517.1_2031738_2031921_+	NA	NA|120aa|up_3|NZ_CP010517.1_2032809_2033169_+	NA	NA|109aa|up_2|NZ_CP010517.1_2034764_2035091_-	NA	NA|440aa|up_1|NZ_CP010517.1_2035774_2037094_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|68aa|up_0|NZ_CP010517.1_2037515_2037719_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_001281465.1_ASM128146v1	NZ_CP010516	Cupriavidus gilardii CR3 chromosome 1, complete sequence	1	2229497-2229587	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	GCGGGAGAGGGAGCACACACCGGGCAGT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas3	NA,NA	NA|322aa|up_9|NZ_CP010516.1_2208074_2209040_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|2312aa|up_8|NZ_CP010516.1_2209334_2216270_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|495aa|up_7|NZ_CP010516.1_2216524_2218009_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|785aa|up_6|NZ_CP010516.1_2218001_2220356_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|391aa|up_5|NZ_CP010516.1_2220360_2221533_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|682aa|up_4|NZ_CP010516.1_2221529_2223575_-	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|661aa|up_3|NZ_CP010516.1_2223667_2225650_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|317aa|up_2|NZ_CP010516.1_2226083_2227034_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|183aa|up_1|NZ_CP010516.1_2227121_2227670_+	PRK05208, PRK05208, hypothetical protein; Provisional	NA|508aa|up_0|NZ_CP010516.1_2227887_2229411_+	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|279aa|down_0|NZ_CP010516.1_2229682_2230519_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|767aa|down_1|NZ_CP010516.1_2230607_2232908_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_2|NZ_CP010516.1_2233497_2234160_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|243aa|down_3|NZ_CP010516.1_2234206_2234935_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|138aa|down_4|NZ_CP010516.1_2234973_2235387_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|115aa|down_5|NZ_CP010516.1_2235625_2235970_+	pfam10636, hemP, Hemin uptake protein hemP	NA|136aa|down_6|NZ_CP010516.1_2236096_2236504_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|367aa|down_7|NZ_CP010516.1_2237324_2238425_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|310aa|down_8|NZ_CP010516.1_2238527_2239457_+	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|411aa|down_9|NZ_CP010516.1_2239493_2240726_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional
GCF_001281465.1_ASM128146v1	NZ_CP010516	Cupriavidus gilardii CR3 chromosome 1, complete sequence	2	2544907-2545010	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,WYL,cas3	Orphan	CGCCAGCCGTCCCCGATTGTGTTCTCCCTC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,WYL,cas3	NA|576aa|up_2|NZ_CP010516.1_2539880_2541608_-,NA	NA|462aa|up_9|NZ_CP010516.1_2533054_2534440_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|207aa|up_8|NZ_CP010516.1_2535403_2536024_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|143aa|up_7|NZ_CP010516.1_2536039_2536468_+	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	NA|372aa|up_6|NZ_CP010516.1_2536689_2537805_+	PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional	NA|63aa|up_5|NZ_CP010516.1_2537785_2537974_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|270aa|up_4|NZ_CP010516.1_2537985_2538795_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|222aa|up_3|NZ_CP010516.1_2539139_2539805_+	PRK00279, adk, adenylate kinase; Reviewed	NA|576aa|up_2|NZ_CP010516.1_2539880_2541608_-	NA	NA|253aa|up_1|NZ_CP010516.1_2541957_2542716_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|624aa|up_0|NZ_CP010516.1_2542925_2544797_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|298aa|down_0|NZ_CP010516.1_2545057_2545951_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|340aa|down_1|NZ_CP010516.1_2546114_2547134_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|507aa|down_2|NZ_CP010516.1_2547306_2548827_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|171aa|down_3|NZ_CP010516.1_2548820_2549333_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|403aa|down_4|NZ_CP010516.1_2549349_2550558_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|298aa|down_5|NZ_CP010516.1_2550628_2551522_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|214aa|down_6|NZ_CP010516.1_2551757_2552399_+	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|324aa|down_7|NZ_CP010516.1_2552511_2553483_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|153aa|down_8|NZ_CP010516.1_2553738_2554197_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|299aa|down_9|NZ_CP010516.1_2554289_2555186_+	PRK00283, xerD, tyrosine recombinase
