The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010413	Bifidobacterium breve strain BR3, complete genome	2421115	923497	969261	2421115	coat,tRNA,integrase,portal,terminase,transposase,tail	Bifidobacterium_phage(59.09%)	55	928591:928607	948745:948761
WP_003829356.1|923497_925531_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.9	2.3e-110
WP_103619788.1|926322_927186_+	PAC2 family protein	NA	NA	NA	NA	NA
WP_003829353.1|927336_928221_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_025301234.1|928371_929163_+	phosphotransferase	NA	NA	NA	NA	NA
928591:928607	attL	CATGATGCCGGTGCCGA	NA	NA	NA	NA
WP_016462961.1|929382_930558_-|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	38.7	1.9e-56
WP_032734778.1|930635_931172_+	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
WP_143247961.1|931295_932105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016462964.1|932121_932547_-	hypothetical protein	NA	I3NLD5	Bifidobacterium_phage	44.2	2.7e-21
WP_016462965.1|932543_933554_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	43.8	9.4e-73
WP_143247960.1|933652_934087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022527507.1|934353_935034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618546.1|935063_935336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618548.1|935543_936161_-	hypothetical protein	NA	I3NLD1	Bifidobacterium_phage	43.4	9.0e-18
WP_060618549.1|936327_936783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016462971.1|936869_937115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618550.1|937370_937634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618551.1|937648_937918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618965.1|937920_938496_+	single-stranded DNA-binding protein	NA	A6N1Y1	Microbacterium_phage	59.5	2.7e-40
WP_060618552.1|938505_938913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618553.1|939045_940464_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	39.2	1.0e-69
WP_060618554.1|940467_941613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828284.1|941609_942014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032746516.1|942038_942248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828285.1|942244_942832_+	hypothetical protein	NA	I3NLB8	Bifidobacterium_phage	35.5	9.5e-25
WP_052829187.1|942828_943023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828287.1|943015_943336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828288.1|943442_943718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_131211567.1|943817_944000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828289.1|944073_944877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052828290.1|944949_945153_-	hypothetical protein	NA	I3NLD9	Bifidobacterium_phage	69.4	7.0e-20
WP_155466432.1|945145_945310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032734780.1|946189_946726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016462991.1|946718_947843_+	hypothetical protein	NA	A0A1C9EHW4	Gordonia_phage	54.3	3.8e-107
WP_060618555.1|947829_948486_+|terminase	terminase	terminase	A0A1C9EHV3	Gordonia_phage	54.6	1.1e-58
WP_060618556.1|948485_949979_+|portal	phage portal protein	portal	D7NW49	Streptomyces_phage	31.7	6.1e-60
948745:948761	attR	TCGGCACCGGCATCATG	NA	NA	NA	NA
WP_060618557.1|949920_951081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032737230.1|951104_951719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618558.1|951735_952593_+|coat	coat protein	coat	E5DV53	Deep-sea_thermophilic_phage	49.0	1.8e-61
WP_007056616.1|952659_953244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016462998.1|953240_953663_+	hypothetical protein	NA	I3NL96	Bifidobacterium_phage	86.4	6.3e-39
WP_106622479.1|953664_954054_+	hypothetical protein	NA	I3NL95	Bifidobacterium_phage	62.3	3.2e-37
WP_060618559.1|954050_954467_+	hypothetical protein	NA	I3NL94	Bifidobacterium_phage	60.9	5.1e-41
WP_060618560.1|954539_955073_+	hypothetical protein	NA	I3NL93	Bifidobacterium_phage	87.2	2.2e-81
WP_016463002.1|955248_955743_+	hypothetical protein	NA	I3NL92	Bifidobacterium_phage	71.2	4.6e-57
WP_016463003.1|955814_956111_+	hypothetical protein	NA	I3NL91	Bifidobacterium_phage	65.3	2.3e-35
WP_060618561.1|956127_959466_+|tail	phage tail tape measure protein	tail	I3NL90	Bifidobacterium_phage	48.4	3.9e-192
WP_016463005.1|959462_960359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618562.1|960422_961367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016463007.1|961366_962575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618563.1|962585_965819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052829195.1|965837_966134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143247959.1|966163_966532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081000307.1|966567_967074_+	hypothetical protein	NA	I3NL83	Bifidobacterium_phage	62.1	2.7e-28
WP_032738804.1|967045_967807_-	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	37.9	1.9e-33
WP_080790637.1|967803_969261_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010413	Bifidobacterium breve strain BR3, complete genome	2421115	1784852	1838587	2421115	protease,integrase,portal,terminase,transposase,capsid,holin,tail	Bifidobacterium_phage(18.75%)	53	1773465:1773483	1823424:1823442
1773465:1773483	attL	ACCCGAACGGCAACCCCGA	NA	NA	NA	NA
WP_095256842.1|1784852_1785179_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_019727793.1|1785310_1786744_+	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_016462205.1|1786924_1787716_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_052789170.1|1787847_1788885_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_015438392.1|1789301_1790621_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	2.2e-29
WP_044051860.1|1790617_1791490_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003828197.1|1791525_1792464_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_060618761.1|1792475_1793642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_052828920.1|1793907_1795095_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_003831442.1|1795140_1796142_-	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_143247920.1|1796334_1797288_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_016462199.1|1797413_1797803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618762.1|1798483_1799110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014483422.1|1799248_1800220_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_050824600.1|1800444_1801449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618763.1|1801448_1802687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003828186.1|1802788_1803742_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_060618764.1|1803872_1804577_-	endonuclease NucS	NA	NA	NA	NA	NA
WP_021649479.1|1804660_1804954_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_015438381.1|1804953_1806426_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_025221132.1|1806434_1807358_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_003828181.1|1807361_1808993_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_015438380.1|1809061_1809898_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_060618765.1|1809932_1810451_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003828178.1|1810516_1810747_-	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_060618766.1|1810850_1811660_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_014483418.1|1812004_1813039_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_060618767.1|1813437_1814262_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B3B212	Gordonia_phage	44.4	3.2e-55
WP_003809885.1|1814311_1814584_+	BrnT family toxin	NA	NA	NA	NA	NA
WP_003809887.1|1814567_1814852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060618768.1|1814917_1815181_-|holin	holin	holin	C9E2L0	Enterococcus_phage	50.8	1.2e-08
WP_060618769.1|1815265_1816501_-	LysM peptidoglycan-binding domain-containing protein	NA	Q8LTJ6	Lactococcus_phage	44.1	6.4e-39
WP_060618770.1|1816562_1816886_-	hypothetical protein	NA	I3NL84	Bifidobacterium_phage	69.8	5.8e-16
WP_065471130.1|1817174_1818410_-	reverse transcriptase	NA	D6PSR5	Lactobacillus_phage	28.0	1.0e-28
WP_060618774.1|1818823_1820404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618991.1|1821295_1821892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618992.1|1821901_1825621_-|tail	phage tail protein	tail	I3NL88	Bifidobacterium_phage	62.8	2.5e-179
1823424:1823442	attR	TCGGGGTTGCCGTTCGGGT	NA	NA	NA	NA
WP_060618775.1|1825641_1826421_-	hypothetical protein	NA	I3NL89	Bifidobacterium_phage	37.0	8.7e-42
WP_060618776.1|1826440_1829509_-	tape measure protein	NA	R9QN01	Lactococcus_phage	42.4	1.8e-74
WP_060618777.1|1829510_1829903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618778.1|1829914_1830235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618779.1|1830289_1830877_-	hypothetical protein	NA	A0A141E164	Streptococcus_phage	38.0	7.0e-20
WP_060618780.1|1830908_1831274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618781.1|1831270_1831546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618782.1|1831557_1831893_-	hypothetical protein	NA	Q7Y4I1	Streptococcus_phage	30.8	2.5e-06
WP_060618783.1|1831889_1832342_-	hypothetical protein	NA	A0A1D8ETI1	Propionibacterium_phage	51.7	7.3e-25
WP_060618784.1|1832353_1832668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618785.1|1832667_1833573_-|capsid	phage major capsid protein	capsid	A0A0H4INI2	Propionibacterium_phage	33.4	1.2e-34
WP_016462172.1|1833618_1834152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016462171.1|1834283_1834544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060618786.1|1834501_1835704_-	hypothetical protein	NA	A0A1D8EU68	Propionibacterium_phage	45.8	4.5e-21
WP_060618787.1|1835654_1837154_-|portal	phage portal protein	portal	A0A068F3B8	Mycobacterium_phage	33.7	2.8e-57
WP_060618788.1|1837153_1838587_-|terminase	terminase	terminase	V5R8Y1	Arthrobacter_phage	38.4	2.4e-85
