The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	710420	718241	2783537		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|710420_711476_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|711475_712162_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|712136_712610_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|712952_713393_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|713672_714257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|714355_715069_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|715072_715492_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|715493_716162_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|716512_717106_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|717089_718241_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	730212	744853	2783537		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|730212_731271_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|731609_732152_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|733030_733948_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|734038_734140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|734217_735723_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|736063_736564_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|736583_737450_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|738250_738649_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|738611_740717_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|740834_741806_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|741986_742142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|742180_743152_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|743138_744095_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|744091_744853_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	795817	814181	2783537	coat,terminase,integrase	Staphylococcus_phage(72.22%)	24	797189:797204	804588:804603
WP_001050048.1|795817_798190_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
797189:797204	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
WP_001085183.1|798211_798676_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_000121224.1|799239_800346_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	2.0e-76
WP_078064262.1|800351_800999_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|801156_801363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|801398_801626_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|801622_801796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|801762_801966_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403838.1|801967_802351_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_053819376.1|802351_802660_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.4	8.7e-22
WP_053819377.1|802719_804336_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.9	1.8e-246
WP_053819378.1|804511_805315_+	DNA primase	NA	Q4ZE69	Staphylococcus_phage	96.3	2.2e-149
804588:804603	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
WP_078160500.1|805301_805574_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	90.0	1.3e-40
WP_053819380.1|805575_806217_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	95.3	3.5e-113
WP_001190599.1|806752_807094_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	3.2e-57
WP_000846289.1|807105_807684_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448776.1|807701_807920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771373.1|807970_808498_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.7	3.7e-89
WP_053819381.1|808500_808842_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.9e-57
WP_001293088.1|808838_809408_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
WP_001035599.1|809562_810267_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001035616.1|811143_811704_-	DUF4888 domain-containing protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
WP_000278088.1|812491_813292_+	staphylococcal enterotoxin type C3	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
WP_001574561.1|813458_814181_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	34.9	1.2e-26
>prophage 4
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	845943	901383	2783537	head,capsid,transposase,holin,terminase,integrase,tail,portal,plate	Staphylococcus_phage(87.3%)	75	841259:841274	898270:898285
841259:841274	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_001006450.1|845943_847194_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|847183_847648_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|847798_849196_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145730.1|849263_850313_-|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	100.0	2.7e-203
WP_042908153.1|850509_851214_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	99.1	8.7e-126
WP_053819385.1|851245_851971_-	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	99.6	1.4e-123
WP_000775187.1|851998_852673_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|852689_853022_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|853284_853479_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|853478_854246_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|854246_854471_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_031790431.1|854510_854960_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	98.7	1.5e-78
WP_000977382.1|854973_855195_+	hypothetical protein	NA	A1KWZ3	Staphylococcus_virus	100.0	1.5e-31
WP_000048124.1|855187_855349_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_053819386.1|855442_855703_+	DUF1108 family protein	NA	A0A068A219	Staphylococcus_phage	97.7	2.6e-43
WP_001205732.1|855711_855975_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_053819387.1|855983_857927_+	AAA family ATPase	NA	I1W619	Staphylococcus_phage	98.3	0.0e+00
WP_053819388.1|857928_858849_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	3.9e-166
WP_071621397.1|858929_859547_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_017466775.1|859547_860018_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.8	5.3e-79
WP_031833239.1|860047_860932_+	DnaD domain protein	NA	A0A1W6JPN9	Staphylococcus_phage	100.0	1.7e-139
WP_053819389.1|860938_861157_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	97.2	2.0e-36
WP_000401964.1|861165_861570_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_053819390.1|861582_861951_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	98.3	2.8e-51
WP_000228426.1|861954_862197_+	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	97.5	1.2e-39
WP_053819391.1|862209_862611_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	97.7	5.2e-67
WP_053819392.1|862607_862973_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	6.7e-53
WP_029265083.1|862965_863220_+	DUF1024 family protein	NA	B5WZN0	Staphylococcus_phage	98.8	5.5e-38
WP_078064235.1|863182_863377_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	100.0	8.2e-26
WP_029753394.1|863369_863879_+	dUTPase	NA	M9NS45	Staphylococcus_phage	98.8	1.5e-90
WP_000195803.1|863915_864122_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_053819393.1|864118_864505_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	95.3	4.1e-61
WP_053819394.1|864501_864675_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.9e-21
WP_000286968.1|864675_865077_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594087.1|865401_865896_+	hypothetical protein	NA	A0A0N9BAX3	Staphylococcus_phage	99.4	2.2e-83
WP_001037578.1|865888_867112_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000177422.1|867108_868533_+|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	100.0	6.2e-272
WP_000184135.1|868501_869455_+|capsid	minor capsid protein	capsid	A0A0N7E0U6	Staphylococcus_phage	100.0	2.3e-177
WP_000346033.1|869456_869663_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_001019219.1|869765_870350_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000235168.1|870366_871281_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002931.1|871292_871436_+	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000177352.1|871441_871792_+	hypothetical protein	NA	A0A0N6WMR1	Staphylococcus_phage	100.0	4.1e-60
WP_000483040.1|871803_872139_+|head	phage head closure protein	head	Q4ZBR2	Staphylococcus_phage	100.0	8.8e-60
WP_001151330.1|872125_872539_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000270192.1|872551_872977_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|872977_873535_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_053819395.1|873601_874108_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	99.4	1.7e-91
WP_000880587.1|874152_874437_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_031868680.1|874440_877584_+|terminase	terminase	terminase	Q4ZBY3	Staphylococcus_virus	100.0	0.0e+00
WP_000560181.1|877598_878540_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_053819396.1|878550_880437_+	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	99.8	0.0e+00
WP_000323257.1|880449_882348_+	hypothetical protein	NA	Q4ZBX7	Staphylococcus_virus	99.8	0.0e+00
WP_029052110.1|882347_884171_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.8	0.0e+00
WP_001599201.1|884170_884548_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	99.2	1.1e-53
WP_001790193.1|884551_884725_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|884765_885065_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524039.1|885201_887076_+	CHAP domain-containing protein	NA	A7VMY9	Staphylococcus_phage	100.0	0.0e+00
WP_000276639.1|887088_888261_+|plate	BppU family phage baseplate upper protein	plate	B2ZZ03	Staphylococcus_phage	100.0	4.9e-198
WP_000398862.1|888266_888662_+	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_000339141.1|888717_889020_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_053819397.1|889030_890485_+	CHAP domain-containing protein	NA	I1W626	Staphylococcus_phage	99.8	9.8e-289
WP_001788502.1|890730_890883_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139426.1|890953_891064_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	91.7	3.9e-09
WP_000382163.1|891050_891251_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000274029.1|892081_892396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|892760_893801_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267236.1|893814_894882_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|895178_895262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|895309_896158_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|896170_896998_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|897024_898344_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
898270:898285	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_000201875.1|898427_899345_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|899474_899858_+	YutD family protein	NA	NA	NA	NA	NA
WP_053819398.1|900063_901383_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	1047822	1056295	2783537		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1047822_1048305_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1048291_1049416_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1049419_1050124_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1050123_1050387_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1050388_1051060_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1051052_1053242_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1053220_1054705_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1054697_1055726_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1055728_1056295_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	1674667	1683710	2783537	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1674667_1675186_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1675207_1677481_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_053819414.1|1677683_1679963_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.0	1.3e-29
WP_001160682.1|1680237_1680498_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1680516_1681656_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1681678_1682704_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1682705_1683710_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	1807141	1869350	2783537	tRNA,protease	Staphylococcus_phage(95.65%)	59	NA	NA
WP_001050566.1|1807141_1813702_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1814027_1814339_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001108730.1|1814360_1816775_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1817065_1818247_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1818356_1819310_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1819306_1819870_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1819992_1820394_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1820965_1821793_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1821795_1821915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1822026_1823028_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1823149_1823614_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1823626_1824808_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1824818_1825451_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|1825457_1826489_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1826981_1828484_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1829006_1829321_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1829320_1830613_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1830699_1831554_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1831829_1832054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1832252_1832723_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1832835_1833279_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1833265_1833709_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1834004_1834640_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1835079_1835793_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1836052_1836355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1836610_1836976_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1836972_1837326_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1839322_1840156_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_053819418.1|1840367_1841276_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.0	1.3e-137
WP_000933820.1|1841397_1842594_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1842965_1844558_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1844935_1845682_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1845686_1846160_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1846225_1846483_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1846479_1847481_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1847485_1848964_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1849122_1849578_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1849880_1850531_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1850611_1851607_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1851681_1852308_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1852348_1852690_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1852790_1853363_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1854717_1854813_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1854935_1855037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1856112_1857342_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|1857334_1859074_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1859054_1859189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1859251_1859971_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1860072_1860180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1860128_1860848_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1860968_1861688_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1861745_1862468_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1862592_1863300_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1864262_1864844_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|1865316_1865535_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|1865790_1866264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1866268_1867060_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1867429_1868413_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1868414_1869350_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 8
NZ_CP010890	Staphylococcus aureus strain SA564 chromosome, complete genome	2783537	1963169	2057757	2783537	head,capsid,holin,terminase,integrase,tail,portal,tRNA,protease	Staphylococcus_phage(86.84%)	113	1959606:1959630	2060043:2060067
1959606:1959630	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|1963169_1963472_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1963838_1965377_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1965465_1966665_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|1966677_1968681_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|1968684_1970877_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|1970873_1971566_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1971737_1972040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1972148_1973444_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|1974303_1975470_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1975500_1975827_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1976118_1976292_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1976272_1976875_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1977145_1977967_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1977959_1979429_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1979612_1980689_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1980708_1981503_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1981574_1981682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053819422.1|1981692_1983255_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1983459_1984557_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1984925_1985486_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1985538_1986468_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1986660_1986834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1986885_1988265_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1988384_1989413_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1989682_1990084_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1990656_1990830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053819423.1|1991280_1992321_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1992377_1993220_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1993216_1993774_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1993833_1994358_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1994478_1995042_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1995107_1995848_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1995847_1996720_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1996716_1997397_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|1997397_1998294_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1998290_1998671_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1998928_1999105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1999347_1999446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1999645_2000932_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2001210_2001501_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|2001515_2002946_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2003903_2004083_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2004397_2004658_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2004710_2005061_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|2005743_2006193_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920042.1|2007268_2007760_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000861026.1|2007950_2008706_-	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
WP_000611512.1|2008717_2008972_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2009023_2009131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2009183_2009360_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000034846.1|2009562_2010345_-	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_000340977.1|2010756_2011131_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2011186_2011474_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2011519_2011672_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_053819424.1|2011664_2015447_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.5	0.0e+00
WP_000567396.1|2015462_2016947_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000504568.1|2016943_2021473_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
WP_001096355.1|2021717_2022068_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2022117_2022342_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|2022383_2023028_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2023028_2023436_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|2023432_2023837_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2023833_2024196_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2024179_2024464_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2024453_2024738_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2024757_2025903_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2025926_2026664_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_053819425.1|2026647_2027835_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.9e-219
WP_000625088.1|2027850_2029512_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2029508_2029853_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2029982_2030282_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2030513_2030930_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|2030957_2031158_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|2031157_2031307_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|2031303_2031510_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282077.1|2031506_2031752_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000185693.1|2031788_2032325_-	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|2032321_2032567_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178987.1|2032581_2032830_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_000111491.1|2032826_2033084_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|2033083_2033455_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401969.1|2033467_2033872_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2033880_2034099_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2034105_2034999_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2035028_2035499_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_064135358.1|2035499_2036117_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000180600.1|2036197_2037118_-	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_000700554.1|2037119_2039063_-	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2039071_2039335_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2039343_2039604_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2039608_2039911_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2040005_2040167_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2040163_2040487_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2040541_2040922_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|2040908_2041106_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148605.1|2041121_2041874_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128909.1|2041924_2042254_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001025404.1|2042242_2042458_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2042473_2042737_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001031454.1|2042870_2043584_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2043599_2044532_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2044537_2044879_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000694772.1|2045082_2045265_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_001558608.1|2045364_2046348_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000427213.1|2046358_2046601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000857180.1|2046663_2047701_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000595392.1|2048819_2049836_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2049857_2050913_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2051348_2052572_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2053015_2054323_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2054862_2056479_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2056554_2056839_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2057013_2057757_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2060043:2060067	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
