assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	1	2318108-2318231	1	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA|30aa|down_7|NZ_CP012635.1_2327128_2327218_+	NA|471aa|up_9|NZ_CP012635.1_2307561_2308974_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP012635.1_2309530_2309740_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP012635.1_2310195_2310822_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP012635.1_2310842_2312945_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP012635.1_2312957_2313596_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP012635.1_2313659_2314328_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP012635.1_2314324_2315110_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP012635.1_2315113_2315926_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP012635.1_2315937_2317542_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP012635.1_2317667_2317973_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP012635.1_2318546_2319803_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP012635.1_2319843_2321217_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP012635.1_2321431_2322073_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP012635.1_2322112_2323261_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP012635.1_2323551_2324763_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP012635.1_2324875_2325808_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP012635.1_2325804_2326830_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP012635.1_2327128_2327218_+	NA	NA|390aa|down_8|NZ_CP012635.1_2327383_2328553_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP012635.1_2328698_2329280_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	2	2978485-2978576	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA|70aa|up_8|NZ_CP012635.1_2967842_2968052_-,NA	NA|503aa|up_9|NZ_CP012635.1_2966175_2967684_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP012635.1_2967842_2968052_-	NA	NA|1321aa|up_7|NZ_CP012635.1_2968106_2972069_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP012635.1_2972108_2972747_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP012635.1_2973033_2974125_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP012635.1_2974124_2974817_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP012635.1_2974828_2975215_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP012635.1_2975222_2976023_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_1|NZ_CP012635.1_2976032_2976623_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_0|NZ_CP012635.1_2976633_2977128_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|199aa|down_0|NZ_CP012635.1_2978999_2979596_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP012635.1_2979616_2979844_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP012635.1_2979881_2981123_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP012635.1_2981657_2982578_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP012635.1_2982577_2982883_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP012635.1_2983238_2983838_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP012635.1_2983834_2986381_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP012635.1_2986380_2987553_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP012635.1_2987682_2988375_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP012635.1_2988347_2989376_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	3	3100121-3100269	3,1	CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Type I-F	CTTTCTAAGCTGCCTGTACGGCAGTGAAC,CTTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	TypeI-F	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|431aa|up_9|NZ_CP012635.1_3085460_3086753_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP012635.1_3086843_3088187_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP012635.1_3088197_3088809_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1348aa|up_6|NZ_CP012635.1_3088967_3093011_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP012635.1_3093145_3093640_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP012635.1_3094183_3095149_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP012635.1_3095271_3097038_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP012635.1_3097038_3098760_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP012635.1_3098801_3099506_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP012635.1_3099790_3100009_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP012635.1_3100809_3101364_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP012635.1_3101374_3102376_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas8f|436aa|down_2|NZ_CP012635.1_3103306_3104614_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_3|NZ_CP012635.1_3104943_3108177_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_4|NZ_CP012635.1_3108173_3109157_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_5|NZ_CP012635.1_3109809_3112086_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_6|NZ_CP012635.1_3112116_3112437_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_7|NZ_CP012635.1_3112759_3112984_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_8|NZ_CP012635.1_3113056_3115003_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_9|NZ_CP012635.1_3114999_3116115_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	4	3109330-3109597	4,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,4,3	4	TypeI-F	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|322aa|up_9|NZ_CP012635.1_3094183_3095149_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_8|NZ_CP012635.1_3095271_3097038_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_7|NZ_CP012635.1_3097038_3098760_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_6|NZ_CP012635.1_3098801_3099506_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_5|NZ_CP012635.1_3099790_3100009_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_4|NZ_CP012635.1_3100809_3101364_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_3|NZ_CP012635.1_3101374_3102376_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas8f|436aa|up_2|NZ_CP012635.1_3103306_3104614_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP012635.1_3104943_3108177_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP012635.1_3108173_3109157_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP012635.1_3109809_3112086_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP012635.1_3112116_3112437_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP012635.1_3112759_3112984_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP012635.1_3113056_3115003_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP012635.1_3114999_3116115_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP012635.1_3116265_3117222_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP012635.1_3117218_3118877_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP012635.1_3119302_3119998_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP012635.1_3120318_3121218_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP012635.1_3121361_3123014_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	5	3306998-3307128	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCT	36	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA|36aa|down_4|NZ_CP012635.1_3310756_3310864_+,NA|125aa|down_6|NZ_CP012635.1_3312500_3312875_+	NA|135aa|up_9|NZ_CP012635.1_3294226_3294631_-	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|98aa|up_8|NZ_CP012635.1_3294780_3295074_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_7|NZ_CP012635.1_3295073_3295187_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_6|NZ_CP012635.1_3295201_3296341_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_5|NZ_CP012635.1_3296356_3297925_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|372aa|up_4|NZ_CP012635.1_3299254_3300370_-	sd00006, TPR, Tetratricopeptide repeat	NA|290aa|up_3|NZ_CP012635.1_3300609_3301479_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_2|NZ_CP012635.1_3301478_3302645_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|up_1|NZ_CP012635.1_3302738_3303956_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|up_0|NZ_CP012635.1_3303970_3306772_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_0|NZ_CP012635.1_3307132_3307849_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_1|NZ_CP012635.1_3307864_3309631_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_2|NZ_CP012635.1_3309630_3309978_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_3|NZ_CP012635.1_3309971_3310376_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_4|NZ_CP012635.1_3310756_3310864_+	NA	NA|428aa|down_5|NZ_CP012635.1_3311069_3312353_+	PRK05614, gltA, citrate synthase	NA|125aa|down_6|NZ_CP012635.1_3312500_3312875_+	NA	NA|349aa|down_7|NZ_CP012635.1_3313026_3314073_+	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|264aa|down_8|NZ_CP012635.1_3314069_3314861_-	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|245aa|down_9|NZ_CP012635.1_3314896_3315631_-	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins
GCF_001280325.1_ASM128032v1	NZ_CP012635	Escherichia coli strain SF-088 chromosome, complete genome	6	3991462-3991595	3	PILER-CR	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	ATCACCAATATTGAAAAT	18	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|283aa|up_9|NZ_CP012635.1_3981987_3982836_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP012635.1_3983150_3983384_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP012635.1_3983469_3983949_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP012635.1_3984140_3986003_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP012635.1_3985995_3986526_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP012635.1_3986633_3987965_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP012635.1_3988023_3988311_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP012635.1_3988307_3989594_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP012635.1_3989644_3990586_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP012635.1_3990600_3991371_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP012635.1_3991843_3993358_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP012635.1_3993388_3994531_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP012635.1_3994658_3995876_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP012635.1_3995948_3997502_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP012635.1_3997610_3998396_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP012635.1_3998401_3998992_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP012635.1_3999110_3999506_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|153aa|down_7|NZ_CP012635.1_3999795_4000254_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1074aa|down_8|NZ_CP012635.1_4000477_4003699_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP012635.1_4003716_4004865_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
