The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012588	Streptococcus thermophilus strain MN-BM-A01, complete genome	1876516	524264	533190	1876516		Bacillus_phage(50.0%)	8	NA	NA
WP_002948474.1|524264_524870_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
WP_014727417.1|524964_526215_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_014608183.1|526221_527199_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_041827329.1|527200_527812_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.0	4.6e-22
WP_011681019.1|527844_529584_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_011681020.1|529573_531322_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	7.1e-52
WP_002885174.1|531499_531631_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_011681022.1|531639_533190_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
>prophage 2
NZ_CP012588	Streptococcus thermophilus strain MN-BM-A01, complete genome	1876516	537552	549967	1876516	integrase	Streptococcus_phage(70.0%)	15	542215:542232	550067:550084
WP_014727421.1|537552_540189_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.2	2.8e-84
WP_014608193.1|540365_542084_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.1e-27
542215:542232	attL	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_014727422.1|542503_542665_-	hypothetical protein	NA	A3F673	Streptococcus_phage	45.0	2.0e-06
WP_014727423.1|543148_543424_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	45.2	7.8e-14
WP_014727424.1|543440_543623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727425.1|543951_545025_-	virulence-associated protein E	NA	W8CQP1	Croceibacter_phage	37.1	3.7e-43
WP_014727426.1|545359_546217_-	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	61.5	6.5e-99
WP_011227098.1|546231_546504_-	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.4e-18
WP_014727427.1|546505_546817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727428.1|546833_547070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727429.1|547083_547278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727430.1|547281_547587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727431.1|547806_548004_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	67.7	1.4e-17
WP_002948197.1|548166_548685_+	helix-turn-helix transcriptional regulator	NA	A0A286QPK5	Streptococcus_phage	73.8	2.6e-18
WP_014727432.1|548800_549967_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.1	5.6e-154
550067:550084	attR	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
>prophage 3
NZ_CP012588	Streptococcus thermophilus strain MN-BM-A01, complete genome	1876516	806115	879213	1876516	protease,transposase,bacteriocin,tRNA	Streptococcus_phage(25.0%)	61	NA	NA
WP_014621469.1|806115_806316_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	90.9	3.4e-27
WP_002944716.1|806595_806796_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_081005008.1|806884_807109_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002945081.1|808106_809018_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_014621467.1|809014_809989_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.8	4.0e-137
WP_011225838.1|809985_810876_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_014621466.1|810856_811627_-	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_014621465.1|811831_812020_-|protease	serine protease	protease	NA	NA	NA	NA
WP_002946191.1|812839_813331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_014621464.1|813450_814167_-	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	47.7	8.2e-63
WP_014727530.1|814159_814603_-	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_014727531.1|814602_815256_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.9	1.3e-62
WP_002950526.1|815429_815810_-	RidA family protein	NA	NA	NA	NA	NA
WP_014727533.1|816891_817299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727534.1|817323_818670_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.4	3.3e-57
WP_014727535.1|818706_819888_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011681058.1|819892_820375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014727536.1|820519_823006_-	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.5	3.3e-212
WP_011681057.1|823100_823736_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.5	4.5e-73
WP_011681056.1|823839_824796_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002950506.1|824797_825865_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002950502.1|825857_827396_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
WP_002950498.1|827509_828580_-	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.1	6.7e-53
WP_002950496.1|828642_829041_-	cytidine deaminase	NA	NA	NA	NA	NA
WP_014727539.1|830544_830715_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	76.6	1.4e-13
WP_014727540.1|830726_830954_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	61.4	4.3e-18
WP_014727541.1|830994_831585_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014727542.1|831909_832830_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	4.9e-36
WP_002947597.1|832898_833135_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_011681051.1|840613_842152_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_014621445.1|843699_844911_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.4	1.0e-166
WP_095559203.1|845100_846671_-|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_014621443.1|846771_847287_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	29.8	1.1e-05
WP_014621442.1|847306_847468_-	histidine kinase	NA	NA	NA	NA	NA
WP_014621441.1|847490_847814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011225813.1|847891_848191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681048.1|849040_850711_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_002948206.1|850904_851588_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_014608202.1|851580_852126_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
WP_014727546.1|852153_852726_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_011681046.1|852808_854527_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.2	2.2e-271
WP_011681222.1|857746_858940_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	64.6	9.3e-136
WP_011681223.1|859219_860158_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
WP_011681224.1|860144_860330_-	DUF3272 family protein	NA	NA	NA	NA	NA
WP_002950915.1|860556_862209_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.9	1.7e-50
WP_011681225.1|862208_862718_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_014727549.1|862753_863653_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_014727550.1|863727_863904_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002950935.1|864842_865190_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014727551.1|865317_866544_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	53.9	1.3e-100
WP_011226101.1|866553_866826_-	chorismate mutase	NA	NA	NA	NA	NA
WP_023909698.1|866900_868436_-	ribonuclease HII	NA	NA	NA	NA	NA
WP_011681232.1|868486_868930_-	flavodoxin	NA	A7KUZ7	Bacillus_phage	32.6	5.0e-10
WP_011681233.1|869014_869386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226105.1|869397_870117_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_014727552.1|870236_871019_-	esterase family protein	NA	NA	NA	NA	NA
WP_014727555.1|872984_873743_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	1.3e-13
WP_014727556.1|873739_874609_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002950961.1|875753_875975_-	DUF4649 family protein	NA	NA	NA	NA	NA
WP_014608403.1|876176_876386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608082.1|878037_879213_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	28.0	1.1e-35
>prophage 4
NZ_CP012588	Streptococcus thermophilus strain MN-BM-A01, complete genome	1876516	1284846	1345356	1876516	protease,transposase,bacteriocin,tRNA	Bacillus_virus(28.57%)	60	NA	NA
WP_011681535.1|1284846_1286946_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.5	5.4e-123
WP_011681536.1|1287659_1288751_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011681537.1|1288757_1289567_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011227491.1|1289822_1290176_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_014727666.1|1290199_1290790_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002951698.1|1290786_1291419_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	31.4	1.4e-18
WP_002951703.1|1292077_1293196_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA	NA
WP_002951705.1|1293195_1293723_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA	NA
WP_014727667.1|1293859_1294774_-	EamA family transporter	NA	NA	NA	NA	NA
WP_014727668.1|1294880_1295234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946582.1|1295331_1296774_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_014608642.1|1296773_1298240_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002884769.1|1298239_1298542_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_024010053.1|1298681_1298936_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_080998437.1|1298948_1299158_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_041827375.1|1301070_1301580_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_014608646.1|1301591_1302440_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002946999.1|1302563_1303115_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_002951720.1|1303177_1303963_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002951721.1|1304222_1305437_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002946987.1|1305791_1306244_+	universal stress protein	NA	NA	NA	NA	NA
WP_014621905.1|1307306_1307675_-	membrane protein	NA	NA	NA	NA	NA
WP_002946980.1|1307886_1308687_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_002951727.1|1309682_1311014_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_011226459.1|1311125_1311908_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
WP_011681548.1|1312529_1314596_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011226461.1|1314604_1314847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226462.1|1314843_1315392_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	44.1	3.5e-37
WP_011226463.1|1315388_1316333_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_014608650.1|1316417_1317455_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011681550.1|1317471_1317969_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	1.1e-13
WP_011226466.1|1318002_1318551_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226467.1|1318692_1319613_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_014621911.1|1319678_1319903_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_014608652.1|1320117_1320861_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	1.2e-29
WP_095559509.1|1320860_1321607_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002947030.1|1323291_1323525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608654.1|1323822_1324926_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011226473.1|1325204_1327514_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_014727672.1|1327780_1328563_+	carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_014608655.1|1328613_1329066_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014621914.1|1329416_1329722_-	type I restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011681558.1|1330699_1331455_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_011681559.1|1331451_1332102_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.5	1.1e-21
WP_002951776.1|1332304_1333261_-	serine hydrolase	NA	NA	NA	NA	NA
WP_014608659.1|1334296_1334659_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002951781.1|1334745_1335609_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
WP_011681561.1|1335729_1337997_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_002951783.1|1338076_1338457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002945924.1|1338581_1338845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197070.1|1339166_1339463_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011681562.1|1339627_1339834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681563.1|1339864_1340554_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_087009847.1|1340747_1342317_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_014608660.1|1342463_1342718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024703992.1|1342968_1343370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681567.1|1343963_1344179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608662.1|1344374_1344605_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681569.1|1344960_1345161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681570.1|1345179_1345356_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
