assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	1	135634-135718	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	135660-135692|135660-135692	NZ_CP012593.1_1353370-1353402|NZ_CP012593.1_1441749-1441717	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NZ_CP012593.1_124779_125985_+,NA|68aa|down_0|NZ_CP012593.1_135779_135983_-	NA|402aa|up_9|NZ_CP012593.1_124779_125985_+	NA	NA|402aa|up_8|NZ_CP012593.1_125985_127191_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP012593.1_127201_127759_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP012593.1_127758_128646_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP012593.1_128699_129962_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP012593.1_130038_131184_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP012593.1_131248_131575_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP012593.1_131581_131965_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP012593.1_132391_133879_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP012593.1_134525_135485_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP012593.1_135779_135983_-	NA	NA|171aa|down_1|NZ_CP012593.1_136161_136674_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP012593.1_137015_137756_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP012593.1_137769_138741_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP012593.1_138737_139499_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP012593.1_139511_140543_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP012593.1_140759_141119_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP012593.1_141292_142318_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP012593.1_142703_143954_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP012593.1_144400_151576_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2	431339-431440	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP012593.1_422898_423108_-,NA|128aa|up_6|NZ_CP012593.1_423932_424316_-,NA|33aa|up_0|NZ_CP012593.1_430563_430662_+,NA|221aa|down_1|NZ_CP012593.1_432530_433193_-,NA|179aa|down_7|NZ_CP012593.1_439284_439821_-	NA|84aa|up_9|NZ_CP012593.1_422608_422860_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP012593.1_422898_423108_-	NA	NA|194aa|up_7|NZ_CP012593.1_423285_423867_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP012593.1_423932_424316_-	NA	NA|209aa|up_5|NZ_CP012593.1_424585_425212_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP012593.1_425655_427179_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP012593.1_427194_427764_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP012593.1_428255_429011_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP012593.1_429090_430479_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP012593.1_430563_430662_+	NA	NA|319aa|down_0|NZ_CP012593.1_431456_432413_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP012593.1_432530_433193_-	NA	NA|136aa|down_2|NZ_CP012593.1_433335_433743_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP012593.1_434255_434834_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP012593.1_434833_436102_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP012593.1_436139_437606_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP012593.1_437630_439172_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP012593.1_439284_439821_-	NA	NA|243aa|down_8|NZ_CP012593.1_440188_440917_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP012593.1_441315_441588_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	3	786922-787004	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|34aa|down_1|NZ_CP012593.1_788659_788761_+,NA|52aa|down_8|NZ_CP012593.1_796607_796763_+	NA|237aa|up_9|NZ_CP012593.1_772309_773020_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|NZ_CP012593.1_773003_774008_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|NZ_CP012593.1_774481_776422_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|440aa|up_6|NZ_CP012593.1_776717_778037_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|628aa|up_5|NZ_CP012593.1_778211_780095_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP012593.1_780106_781888_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP012593.1_782109_783087_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP012593.1_783079_784594_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP012593.1_784833_785892_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP012593.1_786230_786773_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP012593.1_787651_788569_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP012593.1_788659_788761_+	NA	NA|502aa|down_2|NZ_CP012593.1_788838_790344_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP012593.1_790684_791185_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP012593.1_791204_792071_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP012593.1_792871_793270_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP012593.1_793232_795338_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP012593.1_795455_796427_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP012593.1_796607_796763_+	NA	NA|324aa|down_9|NZ_CP012593.1_796801_797773_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	4	827869-827947	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	827893-827923|827893-827923|827893-827923	NZ_CP012593.1_258862-258832|NZ_CP012593.1_258807-258777|NZ_CP012593.1_1657626-1657656	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP012593.1_818745_818850_+,NA|36aa|up_5|NZ_CP012593.1_820282_820390_+,NA	NA|191aa|up_9|NZ_CP012593.1_815186_815759_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012593.1_816172_818704_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012593.1_818745_818850_+	NA	NA|370aa|up_6|NZ_CP012593.1_819018_820129_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012593.1_820282_820390_+	NA	NA|280aa|up_4|NZ_CP012593.1_820537_821377_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012593.1_821550_822201_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012593.1_822197_822434_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012593.1_822702_824688_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012593.1_824695_827542_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012593.1_828205_829138_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012593.1_829143_829983_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012593.1_829990_830476_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012593.1_830483_831923_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012593.1_831989_832925_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012593.1_833693_834605_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012593.1_834601_835597_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012593.1_835707_836652_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012593.1_837215_837803_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012593.1_838045_838948_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	5	833327-833417	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	14	833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384|833360-833384	NZ_CP012593.1_135642-135618|NZ_CP012593.1_258778-258754|NZ_CP012593.1_659970-659946|NZ_CP012593.1_785963-785987|NZ_CP012593.1_876888-876912|NZ_CP012593.1_1353294-1353270|NZ_CP012593.1_1623280-1623304|NZ_CP012593.1_1637835-1637811|NZ_CP012593.1_1951703-1951727|NZ_CP012593.1_258833-258809|NZ_CP012593.1_258888-258864|NZ_CP012593.1_945601-945625|NZ_CP012593.1_1657541-1657565|NZ_CP012593.1_1657714-1657738	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP012593.1_820537_821377_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP012593.1_821550_822201_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP012593.1_822197_822434_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP012593.1_822702_824688_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP012593.1_824695_827542_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP012593.1_828205_829138_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP012593.1_829143_829983_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP012593.1_829990_830476_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP012593.1_830483_831923_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP012593.1_831989_832925_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP012593.1_833693_834605_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP012593.1_834601_835597_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP012593.1_835707_836652_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP012593.1_837215_837803_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP012593.1_838045_838948_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP012593.1_839650_840280_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP012593.1_841092_842106_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP012593.1_842158_843169_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP012593.1_843307_844498_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP012593.1_844619_845381_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	6	876815-876896	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	876839-876872	NZ_CP012593.1_1353402-1353369	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP012593.1_869917_870499_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012593.1_870571_871189_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012593.1_871343_871838_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012593.1_872236_872659_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012593.1_872806_873523_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012593.1_873605_874145_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012593.1_874295_874616_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012593.1_874759_875116_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012593.1_875273_875654_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012593.1_875832_876711_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012593.1_877507_877894_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012593.1_877886_878183_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012593.1_878432_879458_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012593.1_879450_880146_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012593.1_880163_880985_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP012593.1_881338_881533_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP012593.1_881766_882618_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP012593.1_882945_883707_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP012593.1_883804_885112_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP012593.1_885217_886468_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	7	1623204-1623288	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1623230-1623262	NZ_CP012593.1_1353402-1353370	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP012593.1_1612413_1613097_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP012593.1_1613340_1613517_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP012593.1_1613809_1615156_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP012593.1_1615162_1615915_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP012593.1_1615916_1616855_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP012593.1_1616858_1617998_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP012593.1_1618133_1619966_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP012593.1_1620034_1620661_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP012593.1_1620692_1621670_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP012593.1_1621770_1622895_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP012593.1_1623460_1625284_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP012593.1_1625629_1625881_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP012593.1_1625925_1626900_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP012593.1_1626956_1629158_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP012593.1_1629162_1629624_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP012593.1_1629715_1630402_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP012593.1_1630441_1631158_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP012593.1_1631160_1631514_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP012593.1_1631514_1632099_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP012593.1_1632088_1632658_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	8	2054223-2054304	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2054247-2054280|2054247-2054280|2054247-2054280|2054247-2054280|2054247-2054280	NZ_CP012593.1_827868-827901|NZ_CP012593.1_1140141-1140108|NZ_CP012593.1_1743200-1743167|NZ_CP012593.1_1357743-1357776|NZ_CP012593.1_2757996-2758029	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|NZ_CP012593.1_2045967_2046309_+,NA|61aa|up_6|NZ_CP012593.1_2046512_2046695_+,NA|81aa|up_4|NZ_CP012593.1_2047788_2048031_+,NA|250aa|down_3|NZ_CP012593.1_2058052_2058802_-,NA|71aa|down_5|NZ_CP012593.1_2060961_2061174_-,NA|193aa|down_8|NZ_CP012593.1_2062119_2062698_-,NA|114aa|down_9|NZ_CP012593.1_2062709_2063051_-	NA|238aa|up_9|NZ_CP012593.1_2044300_2045014_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_CP012593.1_2045029_2045962_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_CP012593.1_2045967_2046309_+	NA	NA|61aa|up_6|NZ_CP012593.1_2046512_2046695_+	NA	NA|328aa|up_5|NZ_CP012593.1_2046794_2047778_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_CP012593.1_2047788_2048031_+	NA	NA|346aa|up_3|NZ_CP012593.1_2048093_2049131_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP012593.1_2050249_2051266_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP012593.1_2051287_2052343_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP012593.1_2052778_2054002_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP012593.1_2054445_2055753_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|231aa|down_1|NZ_CP012593.1_2056754_2057447_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|202aa|down_2|NZ_CP012593.1_2057433_2058039_-	pfam13021, DUF3885, Domain of unknown function (DUF3885)	NA|250aa|down_3|NZ_CP012593.1_2058052_2058802_-	NA	NA|190aa|down_4|NZ_CP012593.1_2060395_2060965_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|71aa|down_5|NZ_CP012593.1_2060961_2061174_-	NA	NA|176aa|down_6|NZ_CP012593.1_2061305_2061833_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_7|NZ_CP012593.1_2061883_2062102_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_8|NZ_CP012593.1_2062119_2062698_-	NA	NA|114aa|down_9|NZ_CP012593.1_2062709_2063051_-	NA
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	9	2068789-2068877	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|88aa|up_8|NZ_CP012593.1_2064233_2064497_-,NA|121aa|up_7|NZ_CP012593.1_2064498_2064861_-,NA|70aa|up_3|NZ_CP012593.1_2067885_2068095_-,NA|49aa|up_2|NZ_CP012593.1_2068087_2068234_-,NA	NA|214aa|up_9|NZ_CP012593.1_2063590_2064232_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|88aa|up_8|NZ_CP012593.1_2064233_2064497_-	NA	NA|121aa|up_7|NZ_CP012593.1_2064498_2064861_-	NA	NA|490aa|up_6|NZ_CP012593.1_2065139_2066609_-	pfam05272, VirE, Virulence-associated protein E	NA|290aa|up_5|NZ_CP012593.1_2066625_2067495_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|108aa|up_4|NZ_CP012593.1_2067559_2067883_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NZ_CP012593.1_2067885_2068095_-	NA	NA|49aa|up_2|NZ_CP012593.1_2068087_2068234_-	NA	NA|106aa|up_1|NZ_CP012593.1_2068230_2068548_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP012593.1_2068552_2068771_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP012593.1_2068943_2069618_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP012593.1_2069631_2070804_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP012593.1_2070872_2072489_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP012593.1_2072564_2072849_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP012593.1_2073023_2073767_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_5|NZ_CP012593.1_2073791_2075051_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP012593.1_2075247_2075874_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP012593.1_2076234_2077020_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP012593.1_2077619_2077754_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP012593.1_2077989_2078553_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	10	2198060-2198140	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP012593.1_2192934_2193165_-,NA|364aa|up_0|NZ_CP012593.1_2196951_2198043_+,NA|35aa|down_0|NZ_CP012593.1_2198475_2198580_-,NA|53aa|down_2|NZ_CP012593.1_2199259_2199418_+	NA|237aa|up_9|NZ_CP012593.1_2188545_2189256_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012593.1_2189376_2189820_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012593.1_2190019_2190433_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012593.1_2190889_2192263_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012593.1_2192934_2193165_-	NA	NA|313aa|up_4|NZ_CP012593.1_2193195_2194134_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012593.1_2194569_2195235_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012593.1_2195386_2195707_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP012593.1_2195708_2196686_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012593.1_2196951_2198043_+	NA	NA|35aa|down_0|NZ_CP012593.1_2198475_2198580_-	NA	NA|57aa|down_1|NZ_CP012593.1_2199096_2199267_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_CP012593.1_2199259_2199418_+	NA	NA|286aa|down_3|NZ_CP012593.1_2200075_2200933_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP012593.1_2201000_2201783_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP012593.1_2202014_2203820_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP012593.1_2204500_2206039_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP012593.1_2206073_2208206_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP012593.1_2208217_2208652_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP012593.1_2208651_2209758_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	11	2210381-2210466	11	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_9|NZ_CP012593.1_2198475_2198580_-,NA|53aa|up_7|NZ_CP012593.1_2199259_2199418_+,NA	NA|35aa|up_9|NZ_CP012593.1_2198475_2198580_-	NA	NA|57aa|up_8|NZ_CP012593.1_2199096_2199267_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_CP012593.1_2199259_2199418_+	NA	NA|286aa|up_6|NZ_CP012593.1_2200075_2200933_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP012593.1_2201000_2201783_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP012593.1_2202014_2203820_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP012593.1_2204500_2206039_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP012593.1_2206073_2208206_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP012593.1_2208217_2208652_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP012593.1_2208651_2209758_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP012593.1_2217800_2219156_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP012593.1_2219182_2220115_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP012593.1_2220116_2220926_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP012593.1_2221114_2222023_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP012593.1_2228263_2229328_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP012593.1_2229475_2230918_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP012593.1_2231240_2231714_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|439aa|down_7|NZ_CP012593.1_2231839_2233156_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP012593.1_2233332_2234016_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP012593.1_2234034_2235222_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001278745.1_ASM127874v1	NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	12	2318424-2318504	12	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479|2318449-2318479	NZ_CP012593.1_840495-840525|NZ_CP012593.1_840551-840581|NZ_CP012593.1_36973-37003|NZ_CP012593.1_375817-375787|NZ_CP012593.1_660034-660004|NZ_CP012593.1_840607-840637|NZ_CP012593.1_877151-877181|NZ_CP012593.1_1041600-1041630|NZ_CP012593.1_1145739-1145709|NZ_CP012593.1_1353358-1353328|NZ_CP012593.1_1441761-1441791|NZ_CP012593.1_1637898-1637868|NZ_CP012593.1_1950355-1950385|NZ_CP012593.1_2307648-2307678|NZ_CP012593.1_2483134-2483164	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP012593.1_2308957_2309122_+,NA|106aa|up_8|NZ_CP012593.1_2309366_2309684_+,NA|84aa|up_5|NZ_CP012593.1_2314805_2315057_+,NA|62aa|up_0|NZ_CP012593.1_2318196_2318382_+,NA	NA|55aa|up_9|NZ_CP012593.1_2308957_2309122_+	NA	NA|106aa|up_8|NZ_CP012593.1_2309366_2309684_+	NA	NA|1056aa|up_7|NZ_CP012593.1_2309867_2313035_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP012593.1_2313151_2314417_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP012593.1_2314805_2315057_+	NA	NA|255aa|up_4|NZ_CP012593.1_2315048_2315813_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP012593.1_2315974_2316415_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP012593.1_2316407_2317619_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP012593.1_2317720_2318071_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP012593.1_2318196_2318382_+	NA	NA|341aa|down_0|NZ_CP012593.1_2318647_2319670_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP012593.1_2319689_2320289_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP012593.1_2320295_2320529_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP012593.1_2320534_2320981_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP012593.1_2320994_2321480_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP012593.1_2321476_2322736_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP012593.1_2322798_2323293_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP012593.1_2323294_2323801_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP012593.1_2323831_2324836_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP012593.1_2325005_2325611_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
