The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	313672	354471	2798705	holin,integrase,terminase,portal,head,capsid,tail,protease	Staphylococcus_phage(86.57%)	67	313562:313579	355205:355222
313562:313579	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264743.1|313672_314878_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.5	6.5e-222
WP_000191464.1|315003_315618_+	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_001795334.1|315614_315761_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000705240.1|315796_315979_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000358220.1|316048_316768_-	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_001198673.1|316909_317128_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_001153965.1|317142_317451_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001148572.1|317607_318405_+	phage antirepressor Ant	NA	Q6R854	Staphylococcus_virus	99.6	1.1e-145
WP_000435343.1|318417_318678_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|318697_318835_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001148859.1|318911_319106_+	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_000768245.1|319100_319457_-	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_000389906.1|319506_319698_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000801108.1|319699_319927_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_001124198.1|319985_320249_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_031880121.1|320260_320422_+	DUF1270 domain-containing protein	NA	O80077	Staphylococcus_phage	98.1	3.3e-20
WP_000291075.1|320513_320774_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000815401.1|320783_321005_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_029052133.1|320997_321777_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	98.1	1.5e-139
WP_000704707.1|321807_322359_+	hypothetical protein	NA	Q4ZBM4	Staphylococcus_phage	99.5	1.7e-100
WP_054575657.1|322371_323064_+	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	98.7	4.4e-130
WP_000504992.1|323035_323851_+	phage replisome organizer N-terminal domain-containing protein	NA	Q4ZAS2	Staphylococcus_virus	100.0	3.5e-118
WP_000803046.1|323860_324634_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	99.2	5.1e-143
WP_000256598.1|324627_324786_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	98.1	4.5e-22
WP_001123695.1|324798_325020_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000049787.1|325030_325435_+	DUF1064 domain-containing protein	NA	Q4ZDX8	Staphylococcus_virus	99.3	2.7e-71
WP_001187253.1|325439_325625_+	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	3.5e-26
WP_054575658.1|325625_326243_+	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.0	9.5e-84
WP_001604162.1|326242_326503_+	DUF3310 domain-containing protein	NA	A0A0H3U300	Staphylococcus_phage	100.0	4.4e-43
WP_001579192.1|326505_326706_+	hypothetical protein	NA	A0A0H3U2V3	Staphylococcus_phage	100.0	1.0e-31
WP_078159100.1|326714_326963_+	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	93.9	9.1e-38
WP_000693989.1|326976_327183_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_031925635.1|327185_327587_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	91.0	3.5e-63
WP_031764468.1|327583_327931_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	99.1	2.2e-58
WP_031880126.1|327927_328236_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	98.0	4.4e-50
WP_031880127.1|328228_328474_+	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	100.0	2.2e-36
WP_000185690.1|328470_329007_+	dUTP diphosphatase	NA	Q9MBR0	Staphylococcus_prophage	99.4	4.6e-95
WP_001282072.1|329043_329289_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	8.4e-36
WP_000195761.1|329285_329522_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	100.0	9.6e-37
WP_000483477.1|329546_329783_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000595238.1|329775_329925_+	transcriptional activator RinB	NA	A7TWB4	Staphylococcus_phage	100.0	4.8e-18
WP_000265041.1|330734_330935_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_002955176.1|330957_331419_+	hypothetical protein	NA	R9QT84	Staphylococcus_phage	99.3	2.5e-73
WP_000406186.1|331533_331986_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	88.0	3.3e-70
WP_000026170.1|331992_332358_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	72.7	1.5e-49
WP_000919030.1|332451_332922_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	93.5	2.6e-78
WP_000568449.1|332921_334616_+|terminase	phage terminase family protein	terminase	D2JLE4	Staphylococcus_phage	90.6	3.4e-301
WP_001052526.1|334629_334833_+	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	75.4	4.3e-17
WP_054575631.1|334835_336092_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	87.1	7.3e-208
WP_025173991.1|336510_337095_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	95.9	3.0e-103
WP_054575632.1|337181_338417_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	79.2	1.0e-169
WP_001240639.1|338453_338612_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	88.5	3.9e-18
WP_001177664.1|338620_338953_+|head,tail	phage head-tail connector protein	head,tail	A7TWQ4	Staphylococcus_phage	80.9	4.6e-45
WP_000671501.1|338942_339275_+|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	83.6	3.3e-51
WP_000501001.1|339274_339652_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	86.4	6.2e-54
WP_000608369.1|339648_340029_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	81.7	8.7e-56
WP_054575633.1|340029_340983_+	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	99.4	1.2e-173
WP_054575634.1|341047_341494_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	99.3	1.6e-72
WP_000571956.1|341553_341676_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_054575635.1|341731_346381_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.0	0.0e+00
WP_031880131.1|346380_347871_+|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	98.6	1.2e-294
WP_060624851.1|347886_351672_+	hypothetical protein	NA	Q6R866	Staphylococcus_virus	99.7	0.0e+00
WP_001153681.1|351661_351814_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040259.1|351860_352148_+	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_042363643.1|352203_352578_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	98.4	1.6e-38
WP_000339141.1|352703_353006_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_054575669.1|353016_354471_+	N-acetylmuramoyl-L-alanine amidase	NA	B7T0L1	Staphylococcus_virus	98.8	2.9e-285
355205:355222	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	399271	417342	2798705	coat,integrase,terminase	Staphylococcus_phage(91.3%)	27	395996:396010	410303:410317
395996:396010	attL	TATTACTAAAACAAA	NA	NA	NA	NA
WP_001052484.1|399271_399463_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001261460.1|399706_400003_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|400023_400527_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|400578_400821_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_031765313.1|401961_403176_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	95.8	2.0e-218
WP_000668215.1|403439_404165_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	28.1	3.1e-17
WP_001245562.1|404336_404549_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	87.1	6.6e-29
WP_001138300.1|404549_404822_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	7.2e-44
WP_000784875.1|404833_404980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|404972_405182_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103945.1|405184_405508_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.6e-20
WP_031765319.1|405572_406442_+	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	98.6	2.4e-165
WP_031765320.1|406458_407916_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.5	3.5e-278
WP_031765322.1|408216_408579_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	94.2	6.0e-62
WP_000998179.1|408580_408865_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_031765326.1|408861_409503_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	88.3	4.5e-105
WP_001288441.1|410210_410555_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
410303:410317	attR	TATTACTAAAACAAA	NA	NA	NA	NA
WP_031769358.1|410589_411168_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	100.0	9.2e-81
WP_001160678.1|411167_411344_+	hypothetical protein	NA	A0A1W6JQJ5	Staphylococcus_phage	100.0	7.7e-23
WP_031765331.1|411396_411924_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	95.4	4.3e-85
WP_031769360.1|411926_412268_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	4.9e-58
WP_031765334.1|412264_412834_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	3.0e-100
WP_001035599.1|412988_413693_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_153153625.1|414103_414268_+	hypothetical protein	NA	U3PG28	Staphylococcus_phage	44.4	1.9e-07
WP_031765336.1|414623_415181_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	69.4	1.7e-63
WP_000273396.1|415739_416159_+	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_001606776.1|416172_417342_+	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	99.5	1.6e-212
>prophage 3
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	763521	771342	2798705		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|763521_764577_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|764576_765263_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|765237_765711_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|766053_766494_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|766773_767358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|767456_768170_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|768173_768593_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|768594_769263_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|769613_770207_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|770190_771342_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 4
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	784833	799474	2798705		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|784833_785892_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|786230_786773_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|787651_788569_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|788659_788761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|788838_790344_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|790684_791185_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|791204_792071_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|792871_793270_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|793232_795338_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|795455_796427_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|796607_796763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|796801_797773_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|797759_798716_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|798712_799474_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 5
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	971058	1023072	2798705	bacteriocin,tRNA,protease	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|971058_972048_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|972341_972737_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|973107_973827_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|973947_974934_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|974981_976790_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|977249_978056_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|978078_978444_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|978547_979141_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|979326_979674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|979690_980326_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|980342_981152_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|981148_982003_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|982023_983409_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|983418_985263_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|985540_986311_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|986507_987593_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|987934_989503_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|989647_990406_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|990599_991109_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154223.1|991221_992412_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|992389_993565_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001581533.1|993997_995482_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|995462_995723_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049950.1|995722_997285_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|997586_998390_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|998608_1000933_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1000949_1002308_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1002446_1003958_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1004444_1005014_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1005223_1005442_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|1005522_1006509_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1006707_1006884_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1006898_1007501_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001792055.1|1008416_1008518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1008527_1008800_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870829.1|1008843_1010808_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|1010810_1011131_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|1011127_1011769_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_078159098.1|1011856_1012147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1012287_1012425_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1012513_1012870_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1013357_1014317_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1014362_1014494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1014557_1014773_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|1014937_1015489_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1015540_1016479_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190622.1|1016660_1018022_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526694.1|1018008_1019682_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|1019668_1020472_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|1020464_1021286_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|1021523_1021853_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|1021890_1023072_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	1043110	1051583	2798705		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1043110_1043593_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1043579_1044704_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_054575607.1|1044707_1045412_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	5.6e-48
WP_000848350.1|1045411_1045675_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1045676_1046348_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1046340_1048530_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1048508_1049993_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1049985_1051014_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1051016_1051583_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	1672813	1681856	2798705	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1672813_1673332_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1673353_1675627_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1675829_1678109_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1678383_1678644_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1678662_1679802_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1679824_1680850_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1680851_1681856_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	1805286	1862990	2798705	tRNA,protease	Staphylococcus_phage(95.35%)	54	NA	NA
WP_001050566.1|1805286_1811847_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1812172_1812484_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1812505_1814923_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1815210_1816392_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1816501_1817455_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1817451_1818015_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1818137_1818539_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1819110_1819938_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1819940_1820060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1820171_1821173_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1821294_1821759_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1821771_1822953_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1822963_1823596_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1823602_1824646_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1825126_1826629_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1827151_1827466_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1827465_1828758_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1828844_1829699_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1829974_1830199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1830397_1830868_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1830980_1831424_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1831410_1831854_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1832149_1832785_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1833224_1833938_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1834197_1834500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1834755_1835121_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1835117_1835471_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1837467_1838301_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1838512_1839421_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1839542_1840739_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1841110_1842703_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1843080_1843827_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1843831_1844305_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1844370_1844628_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1844624_1845626_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1845630_1847109_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1847267_1847723_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1848025_1848676_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1848756_1849752_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1849826_1850453_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1850493_1850835_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1850935_1851508_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1852862_1852958_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1853080_1853182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1854257_1855487_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1855479_1857036_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1857199_1857334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1857396_1858116_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1858217_1858325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054575597.1|1858273_1858993_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	3.0e-129
WP_001581695.1|1859113_1859833_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	1.1e-128
WP_001039454.1|1859890_1860613_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1860737_1861445_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1862408_1862990_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 9
NZ_CP012593	Staphylococcus aureus strain HOU1444-VR chromosome, complete genome	2798705	1975734	2072849	2798705	holin,integrase,terminase,coat,portal,head,capsid,tail,protease	Staphylococcus_phage(89.77%)	126	2056291:2056310	2070871:2070890
WP_000827746.1|1975734_1976901_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1976931_1977258_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1977549_1977723_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1977703_1978306_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1978576_1979398_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1979390_1980860_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1981043_1982120_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1982139_1982934_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1983005_1983113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054575624.1|1983123_1984686_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_054575623.1|1984890_1985988_-	pectate lyase	NA	NA	NA	NA	NA
WP_000149686.1|1986356_1986917_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1986969_1987899_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1988091_1988265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1988316_1989696_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1989815_1990844_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1991113_1991515_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1992087_1992261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1992711_1993752_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1993808_1994651_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1994647_1995205_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1995264_1995789_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1995909_1996473_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1996538_1997279_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1997278_1998151_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1998147_1998828_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|1998828_1999725_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1999721_2000102_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2000359_2000536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2000778_2000877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001581722.1|2001076_2002363_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2002641_2002932_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|2002942_2004376_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2005333_2005513_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2005827_2006088_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2006140_2006491_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|2007173_2007623_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920042.1|2008698_2009190_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000861026.1|2009380_2010136_-	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
WP_000611512.1|2010147_2010402_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2010453_2010561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2010613_2010790_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_025174055.1|2010992_2011766_-	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	4.0e-148
WP_000340977.1|2012186_2012561_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2012616_2012904_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2012949_2013102_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_060624862.1|2013094_2016877_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.5	0.0e+00
WP_000567396.1|2016892_2018377_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_031763499.1|2018373_2022903_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
WP_001549167.1|2022959_2023097_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2023147_2023498_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2023547_2023772_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|2023813_2024458_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_054575630.1|2024458_2024866_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	98.5	3.9e-70
WP_000114226.1|2024862_2025267_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2025263_2025626_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2025609_2025894_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2025883_2026168_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_031763505.1|2026187_2027333_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.8e-214
WP_000642728.1|2027356_2028094_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2028077_2029265_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2029280_2030942_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2030938_2031283_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2031412_2031712_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2031943_2032360_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|2032387_2032588_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|2032587_2032737_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|2032733_2032940_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282077.1|2032936_2033182_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000185693.1|2033218_2033755_-	dUTP diphosphatase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|2033751_2033997_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178987.1|2034011_2034260_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_000111491.1|2034256_2034514_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|2034513_2034885_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401969.1|2034897_2035302_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2035310_2035529_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2035535_2036429_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2036458_2036929_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_064135358.1|2036929_2037547_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000180600.1|2037627_2038548_-	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_000700554.1|2038549_2040493_-	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2040501_2040765_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2040773_2041034_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2041038_2041341_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2041435_2041597_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2041593_2041917_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2041971_2042352_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|2042338_2042536_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148605.1|2042551_2043304_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128909.1|2043354_2043684_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001025404.1|2043672_2043888_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2043903_2044167_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001031454.1|2044300_2045014_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2045029_2045962_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2045967_2046309_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000694772.1|2046512_2046695_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_001558608.1|2046794_2047778_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000427213.1|2047788_2048031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000857180.1|2048093_2049131_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000595392.1|2050249_2051266_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2051287_2052343_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2052778_2054002_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2054445_2055753_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
2056291:2056310	attL	TTTTACATCATTCCCGGCAT	NA	NA	NA	NA
WP_000767003.1|2056754_2057447_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_000368755.1|2057433_2058039_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_000708297.1|2058052_2058802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293079.1|2060395_2060965_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	6.6e-100
WP_072326620.1|2060961_2061174_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
WP_001836980.1|2061305_2061833_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	3.7e-89
WP_000448775.1|2061883_2062102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846292.1|2062119_2062698_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_012990920.1|2062709_2063051_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_054575621.1|2063590_2064232_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.1e-110
WP_001804819.1|2064233_2064497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054575622.1|2064498_2064861_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.0	3.0e-61
WP_053040304.1|2065139_2066609_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.7e-280
WP_031765319.1|2066625_2067495_-	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	98.6	2.4e-165
WP_001103945.1|2067559_2067883_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.6e-20
WP_001058492.1|2067885_2068095_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_000708434.1|2068087_2068234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2068230_2068548_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2068552_2068771_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_054575668.1|2068943_2069618_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	46.2	9.2e-40
WP_000179346.1|2069631_2070804_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	1.3e-219
WP_000240642.1|2070872_2072489_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
2070871:2070890	attR	TTTTACATCATTCCCGGCAT	NA	NA	NA	NA
WP_054575667.1|2072564_2072849_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	8.1e-14
>prophage 1
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	0	6656	55713		Streptococcus_phage(100.0%)	4	NA	NA
WP_012816506.1|1468_2074_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_012816505.1|2076_3093_-	DUF3991 and TOPRIM domain-containing protein	NA	NA	NA	NA	NA
WP_031864846.1|3147_4497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031864418.1|4538_6656_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	40.5	1.0e-84
>prophage 2
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	12822	13929	55713		Staphylococcus_phage(100.0%)	1	NA	NA
WP_049276351.1|12822_13929_-	CHAP domain-containing protein	NA	W5R8Q8	Staphylococcus_phage	45.7	1.2e-20
>prophage 3
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	22145	22589	55713		Enterococcus_phage(100.0%)	1	NA	NA
WP_000931137.1|22145_22589_-	single-stranded DNA-binding protein	NA	A0A1M4NDL1	Enterococcus_phage	33.6	2.5e-09
>prophage 4
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	29314	29920	55713		Aeromonas_phage(100.0%)	1	NA	NA
WP_002367801.1|29314_29920_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	33.7	2.7e-19
>prophage 5
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	33752	41018	55713	transposase	Bacillus_phage(40.0%)	6	NA	NA
WP_001059542.1|33752_34721_-	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
WP_002305818.1|34935_36090_-	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
WP_001280781.1|36067_36763_-	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
WP_001015311.1|37396_38077_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_031864412.1|39783_40005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816517.1|40151_41018_+	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	42.9	2.3e-51
>prophage 6
NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	55713	44402	55497	55713	transposase	Staphylococcus_phage(57.14%)	10	NA	NA
WP_001632017.1|44402_44852_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	46.9	5.4e-28
WP_031864414.1|45280_45697_-	YolD-like family protein	NA	A0A1Q1PW34	Staphylococcus_phage	43.5	1.9e-27
WP_031864415.1|45862_46255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042744861.1|47556_48129_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	42.6	1.7e-31
WP_042744862.1|48094_49768_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	78.1	7.9e-242
WP_002487914.1|50053_50824_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_012816508.1|51370_51736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|52362_53535_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_020444769.1|53664_55104_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	1.9e-284
WP_000393259.1|55104_55497_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
>prophage 1
NZ_CP012595	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_02, complete sequence	15957	1933	15782	15957	integrase,holin	Staphylococcus_phage(84.0%)	25	7506:7519	14086:14099
WP_000704707.1|1933_2485_-	hypothetical protein	NA	Q4ZBM4	Staphylococcus_phage	99.5	1.7e-100
WP_029052133.1|2515_3295_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	98.1	1.5e-139
WP_000815401.1|3287_3509_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_031880121.1|3871_4033_-	DUF1270 domain-containing protein	NA	O80077	Staphylococcus_phage	98.1	3.3e-20
WP_001124198.1|4044_4308_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000801108.1|4366_4594_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|4595_4787_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|4836_5193_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|5187_5382_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001662405.1|5458_5596_-	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_000435343.1|5615_5876_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148572.1|5888_6686_-	phage antirepressor Ant	NA	Q6R854	Staphylococcus_virus	99.6	1.1e-145
WP_001153965.1|6842_7151_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001198673.1|7165_7384_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
7506:7519	attL	AAATTTAAGGAGGT	NA	NA	NA	NA
WP_000358220.1|7525_8245_+	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_000705240.1|8314_8497_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001795334.1|8532_8679_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191464.1|8675_9290_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_000264743.1|9415_10621_+|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.5	6.5e-222
WP_054575669.1|11465_12920_-	N-acetylmuramoyl-L-alanine amidase	NA	B7T0L1	Staphylococcus_virus	98.8	2.9e-285
WP_000339141.1|12930_13233_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_042363643.1|13358_13733_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	98.4	1.6e-38
WP_001040259.1|13788_14076_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|14122_14275_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
14086:14099	attR	ACCTCCTTAAATTT	NA	NA	NA	NA
WP_078159103.1|14264_15782_-	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	99.8	4.9e-283
