assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	1	331911-332709	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP012506.2_331426_331609_-,NA	NA|398aa|up_9|NZ_CP012506.2_321605_322799_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP012506.2_322834_324517_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP012506.2_324533_326729_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|392aa|up_6|NZ_CP012506.2_326799_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP012506.2_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP012506.2_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP012506.2_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP012506.2_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP012506.2_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP012506.2_331426_331609_-	NA	NA|886aa|down_0|NZ_CP012506.2_334774_337432_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP012506.2_337722_339333_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP012506.2_339356_340265_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP012506.2_340488_342384_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP012506.2_342380_343997_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP012506.2_343993_347986_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP012506.2_347982_348291_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP012506.2_348293_349835_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP012506.2_349883_350177_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP012506.2_350206_350497_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	2	333094-333205	1	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	333164-333180|333164-333180|333164-333180|333164-333180|333164-333180|333164-333180	NZ_CP012506.2_836383-836367|NZ_CP012506.2_1185043-1185059|NZ_CP012506.2_1209059-1209043|NZ_CP012506.2_2419404-2419420|NZ_CP012506.2_2800219-2800235|NZ_CP012506.2_4037053-4037069	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP012506.2_331426_331609_-,NA	NA|398aa|up_9|NZ_CP012506.2_321605_322799_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP012506.2_322834_324517_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP012506.2_324533_326729_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|392aa|up_6|NZ_CP012506.2_326799_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP012506.2_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP012506.2_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP012506.2_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP012506.2_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP012506.2_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP012506.2_331426_331609_-	NA	NA|886aa|down_0|NZ_CP012506.2_334774_337432_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP012506.2_337722_339333_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP012506.2_339356_340265_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP012506.2_340488_342384_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP012506.2_342380_343997_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP012506.2_343993_347986_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP012506.2_347982_348291_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP012506.2_348293_349835_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP012506.2_349883_350177_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP012506.2_350206_350497_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	3	336096-337064	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	1	4	336936-336959|336936-336959|336936-336959|336936-336959	NZ_CP012506.2_148607-148584|NZ_CP012506.2_1212564-1212541|NZ_CP012506.2_2419916-2419939|NZ_CP012506.2_2689923-2689900	NA	11	11	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP012506.2_331426_331609_-,NA	NA|561aa|up_9|NZ_CP012506.2_322834_324517_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP012506.2_324533_326729_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|392aa|up_7|NZ_CP012506.2_326799_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP012506.2_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP012506.2_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP012506.2_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP012506.2_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP012506.2_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP012506.2_331426_331609_-	NA	NA|936aa|up_0|NZ_CP012506.2_331703_334511_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP012506.2_337722_339333_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP012506.2_339356_340265_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP012506.2_340488_342384_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP012506.2_342380_343997_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP012506.2_343993_347986_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP012506.2_347982_348291_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP012506.2_348293_349835_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP012506.2_349883_350177_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP012506.2_350206_350497_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP012506.2_350507_351395_+	pfam14011, ESX-1_EspG, EspG family
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	4	364822-365520	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	365110-365151|365185-365217	NZ_CP012506.2_373126-373167|NZ_CP012506.2_371941-371973	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP012506.2_361834_362137_+,NA|161aa|down_1|NZ_CP012506.2_374915_375398_-,NA|410aa|down_5|NZ_CP012506.2_377514_378744_+	NA|262aa|up_9|NZ_CP012506.2_356529_357315_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP012506.2_357303_358107_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP012506.2_358116_359514_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP012506.2_359692_361468_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP012506.2_361610_361838_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP012506.2_361834_362137_+	NA	NA|74aa|up_3|NZ_CP012506.2_362184_362406_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP012506.2_362402_362828_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP012506.2_362963_363596_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP012506.2_363592_364501_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP012506.2_374256_374928_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP012506.2_374915_375398_-	NA	NA|239aa|down_2|NZ_CP012506.2_375455_376172_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP012506.2_376273_376930_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP012506.2_376999_377491_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP012506.2_377514_378744_+	NA	NA|621aa|down_6|NZ_CP012506.2_378898_380761_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP012506.2_380832_381219_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP012506.2_381221_381884_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP012506.2_381944_382829_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	5	690391-690467	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP012506.2_676286_676694_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP012506.2_676753_677440_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP012506.2_677593_680227_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP012506.2_680249_682637_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP012506.2_682774_683497_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP012506.2_683493_684291_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP012506.2_684292_685180_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP012506.2_685185_686400_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP012506.2_686396_687428_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP012506.2_687424_688870_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP012506.2_691602_693153_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP012506.2_693204_693597_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP012506.2_693593_693851_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP012506.2_694033_695269_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP012506.2_695519_695933_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP012506.2_695929_696166_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP012506.2_696269_696776_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP012506.2_696889_697360_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP012506.2_697403_698165_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP012506.2_698221_698533_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	6	1570804-1571876	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1571004-1571025	NZ_CP012506.2_1207609-1207588	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP012506.2_1562567_1562885_+,NA	NA|103aa|up_9|NZ_CP012506.2_1560082_1560391_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP012506.2_1560387_1562007_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP012506.2_1562567_1562885_+	NA	NA|209aa|up_6|NZ_CP012506.2_1563019_1563646_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP012506.2_1563711_1564044_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP012506.2_1564059_1565316_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP012506.2_1565443_1566655_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP012506.2_1566727_1568206_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP012506.2_1568202_1569588_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP012506.2_1569665_1570700_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP012506.2_1572730_1573132_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP012506.2_1573128_1573386_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP012506.2_1573468_1574428_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP012506.2_1574452_1575415_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP012506.2_1575548_1576151_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP012506.2_1576231_1578199_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP012506.2_1578216_1579041_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP012506.2_1579209_1579692_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP012506.2_1579763_1580588_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP012506.2_1580784_1581723_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	7	2070992-2071246	3	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2071073-2071090|2071073-2071090|2071163-2071180	NZ_CP012506.2_399422-399405|NZ_CP012506.2_605725-605708|NZ_CP012506.2_3440759-3440742	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP012506.2_2070351_2070615_-,NA	NA|165aa|up_9|NZ_CP012506.2_2056645_2057140_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP012506.2_2057543_2058221_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP012506.2_2058579_2061405_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP012506.2_2061631_2062492_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP012506.2_2062532_2063399_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP012506.2_2063403_2065290_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP012506.2_2065305_2067339_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP012506.2_2067458_2069684_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP012506.2_2069959_2070355_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP012506.2_2070351_2070615_-	NA	NA|346aa|down_0|NZ_CP012506.2_2072383_2073421_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP012506.2_2073420_2074788_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP012506.2_2074961_2076398_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP012506.2_2076433_2077885_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP012506.2_2077914_2078865_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP012506.2_2078879_2079296_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP012506.2_2079573_2079996_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP012506.2_2080044_2080347_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP012506.2_2080343_2080658_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP012506.2_2080657_2082391_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	8	2150825-2150950	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACAGTAATAGGCGGAACATTGATCGGCCCCACCAACGC	39	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP012506.2_2135207_2135678_-,NA|136aa|up_1|NZ_CP012506.2_2142689_2143097_-,NA|127aa|down_6|NZ_CP012506.2_2161547_2161928_-	NA|157aa|up_9|NZ_CP012506.2_2135207_2135678_-	NA	NA|155aa|up_8|NZ_CP012506.2_2136017_2136482_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP012506.2_2136657_2138880_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP012506.2_2138917_2139361_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP012506.2_2139474_2140068_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP012506.2_2140150_2140756_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP012506.2_2140855_2141860_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP012506.2_2141959_2142712_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP012506.2_2142689_2143097_-	NA	NA|767aa|up_0|NZ_CP012506.2_2143231_2145532_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP012506.2_2152646_2155610_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP012506.2_2156058_2156523_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP012506.2_2156620_2157484_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP012506.2_2157521_2158793_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP012506.2_2159064_2160180_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP012506.2_2160170_2161511_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP012506.2_2161547_2161928_-	NA	NA|621aa|down_7|NZ_CP012506.2_2162084_2163947_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP012506.2_2163954_2164434_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP012506.2_2164670_2165444_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	9	2153812-2154031	5	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP012506.2_2135207_2135678_-,NA|136aa|up_1|NZ_CP012506.2_2142689_2143097_-,NA|127aa|down_5|NZ_CP012506.2_2161547_2161928_-	NA|157aa|up_9|NZ_CP012506.2_2135207_2135678_-	NA	NA|155aa|up_8|NZ_CP012506.2_2136017_2136482_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP012506.2_2136657_2138880_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP012506.2_2138917_2139361_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP012506.2_2139474_2140068_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP012506.2_2140150_2140756_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP012506.2_2140855_2141860_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP012506.2_2141959_2142712_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP012506.2_2142689_2143097_-	NA	NA|767aa|up_0|NZ_CP012506.2_2143231_2145532_+	PLN02892, PLN02892, isocitrate lyase	NA|155aa|down_0|NZ_CP012506.2_2156058_2156523_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP012506.2_2156620_2157484_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP012506.2_2157521_2158793_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP012506.2_2159064_2160180_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP012506.2_2160170_2161511_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP012506.2_2161547_2161928_-	NA	NA|621aa|down_6|NZ_CP012506.2_2162084_2163947_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP012506.2_2163954_2164434_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP012506.2_2164670_2165444_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP012506.2_2165447_2166215_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	10	3114254-3115401	2,6,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,NNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,44	1	1	3115325-3115365	NZ_CP012506.2_1978759-1978719	II-B,III-A:II-B,III-A:II-B,III-A	12,14,15	15	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP012506.2_3107533_3107788_-,NA|135aa|up_7|NZ_CP012506.2_3107935_3108340_+,NA|64aa|up_6|NZ_CP012506.2_3108336_3108528_+,NA|86aa|up_4|NZ_CP012506.2_3110114_3110372_+,NA|104aa|up_3|NZ_CP012506.2_3110476_3110788_+,NA|203aa|up_2|NZ_CP012506.2_3111207_3111816_+,NA	NA|92aa|up_9|NZ_CP012506.2_3107082_3107358_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP012506.2_3107533_3107788_-	NA	NA|135aa|up_7|NZ_CP012506.2_3107935_3108340_+	NA	NA|64aa|up_6|NZ_CP012506.2_3108336_3108528_+	NA	NA|385aa|up_5|NZ_CP012506.2_3108726_3109881_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP012506.2_3110114_3110372_+	NA	NA|104aa|up_3|NZ_CP012506.2_3110476_3110788_+	NA	NA|203aa|up_2|NZ_CP012506.2_3111207_3111816_+	NA	NA|470aa|up_1|NZ_CP012506.2_3111886_3113296_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP012506.2_3113292_3114105_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP012506.2_3115432_3116694_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP012506.2_3117057_3117768_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP012506.2_3117777_3118152_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP012506.2_3118148_3120587_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_4|NZ_CP012506.2_3120583_3121306_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP012506.2_3121705_3122251_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP012506.2_3122522_3123407_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP012506.2_3123409_3124297_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP012506.2_3124601_3125147_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP012506.2_3125143_3125413_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	11	3659492-3659610	7	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3659522-3659580	NZ_CP012506.2_3659585-3659643	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_CP012506.2_3665243_3665657_-,NA|126aa|down_7|NZ_CP012506.2_3665691_3666069_-	NA|719aa|up_9|NZ_CP012506.2_3646318_3648475_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP012506.2_3648471_3649140_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP012506.2_3649240_3650425_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_CP012506.2_3650429_3652724_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP012506.2_3652712_3653882_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP012506.2_3653906_3654431_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP012506.2_3654427_3655717_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_CP012506.2_3655670_3656489_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP012506.2_3656443_3656962_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP012506.2_3657004_3657805_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP012506.2_3659876_3660545_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP012506.2_3660585_3661479_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP012506.2_3661475_3661907_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP012506.2_3662014_3663817_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP012506.2_3663826_3664612_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP012506.2_3664608_3665046_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_CP012506.2_3665243_3665657_-	NA	NA|126aa|down_7|NZ_CP012506.2_3665691_3666069_-	NA	NA|450aa|down_8|NZ_CP012506.2_3666102_3667452_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP012506.2_3667502_3667955_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	12	3739929-3740505	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP012506.2_3754737_3755025_-,NA|87aa|down_8|NZ_CP012506.2_3768141_3768402_-	NA|282aa|up_9|NZ_CP012506.2_3719452_3720298_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP012506.2_3720772_3721213_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP012506.2_3721246_3722116_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP012506.2_3722136_3723147_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP012506.2_3723431_3724064_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP012506.2_3724130_3725360_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP012506.2_3725642_3726992_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP012506.2_3727003_3728143_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP012506.2_3728139_3728871_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_0|NZ_CP012506.2_3728879_3736493_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP012506.2_3742607_3742865_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP012506.2_3743120_3752594_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP012506.2_3753219_3753666_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP012506.2_3753702_3754443_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP012506.2_3754737_3755025_-	NA	NA|265aa|down_5|NZ_CP012506.2_3766751_3767546_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_CP012506.2_3767627_3767999_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_7|NZ_CP012506.2_3767896_3768115_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_CP012506.2_3768141_3768402_-	NA	NA|130aa|down_9|NZ_CP012506.2_3768516_3768906_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_001275565.2_ASM127556v2	NZ_CP012506	Mycobacterium tuberculosis strain SCAID 187.0 chromosome, complete genome	13	4110784-4110872	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP012506.2_4101370_4102141_-,NA|119aa|up_3|NZ_CP012506.2_4107275_4107632_+,NA|52aa|up_2|NZ_CP012506.2_4107731_4107887_+,NA|233aa|up_0|NZ_CP012506.2_4109888_4110587_-,NA|126aa|down_6|NZ_CP012506.2_4116107_4116485_+	NA|288aa|up_9|NZ_CP012506.2_4099752_4100616_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP012506.2_4101370_4102141_-	NA	NA|549aa|up_7|NZ_CP012506.2_4102137_4103784_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP012506.2_4103780_4104644_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP012506.2_4104636_4105563_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP012506.2_4105564_4107190_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP012506.2_4107275_4107632_+	NA	NA|52aa|up_2|NZ_CP012506.2_4107731_4107887_+	NA	NA|652aa|up_1|NZ_CP012506.2_4107897_4109853_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP012506.2_4109888_4110587_-	NA	NA|173aa|down_0|NZ_CP012506.2_4110932_4111451_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP012506.2_4111451_4112435_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP012506.2_4112427_4113621_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP012506.2_4113626_4114448_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP012506.2_4114579_4115263_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP012506.2_4115262_4116000_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP012506.2_4116107_4116485_+	NA	NA|225aa|down_7|NZ_CP012506.2_4116583_4117258_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP012506.2_4117363_4118158_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP012506.2_4118164_4118620_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
