The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011306	Stenotrophomonas maltophilia strain ISMMS2R chromosome, complete genome	4509724	566431	575428	4509724		Enterobacteria_phage(42.86%)	7	NA	NA
WP_010480669.1|566431_567487_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	4.1e-79
WP_053442487.1|567501_568389_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.7	1.6e-95
WP_010480673.1|568385_568943_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.0	6.0e-45
WP_049480751.1|568939_569833_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.5	1.8e-27
WP_053442488.1|569937_571341_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	28.9	1.1e-47
WP_010480679.1|571353_572700_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.8	2.0e-30
WP_053442489.1|572797_575428_-	DEAD/DEAH box helicase	NA	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	30.5	8.5e-49
>prophage 2
NZ_CP011306	Stenotrophomonas maltophilia strain ISMMS2R chromosome, complete genome	4509724	926336	999583	4509724	protease,tail,plate	Enterobacter_phage(16.0%)	69	NA	NA
WP_010483890.1|926336_927626_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	1.7e-135
WP_053442573.1|927768_930222_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	51.9	1.9e-220
WP_004146343.1|930439_930712_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	61.8	7.7e-22
WP_019336553.1|931589_933545_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010483881.1|933742_934942_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_053442574.1|934938_935703_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010483877.1|935714_936359_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010483875.1|936372_936825_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	52.7	3.8e-42
WP_019336550.1|936829_937561_+	DNA polymerase III subunit epsilon	NA	A2I2Z6	Vibrio_virus	28.9	1.3e-07
WP_010483871.1|937623_938328_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_010483869.1|938866_939271_+	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.3	7.7e-18
WP_010483867.1|939289_940336_-	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
WP_010483865.1|940356_941106_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
WP_010483863.1|941105_941873_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010483861.1|941869_942259_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010483859.1|942733_943051_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_053442575.1|943408_954313_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_049453599.1|954370_954814_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_053442576.1|954889_955999_-	DUF3667 domain-containing protein	NA	NA	NA	NA	NA
WP_053443790.1|956760_958824_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.4	2.1e-47
WP_010483846.1|958830_959151_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_053442577.1|959233_959833_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_053442578.1|959899_960259_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_005408301.1|960338_960866_-	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_053442579.1|960862_962812_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA	NA
WP_032952475.1|962804_963728_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_053442580.1|963751_964705_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_043398217.1|964747_966583_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_053442581.1|966690_967260_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_019659501.1|967373_967883_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_005408308.1|967990_968185_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_014036188.1|968276_969254_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010483824.1|969331_970114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053442582.1|970282_971227_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_005408312.1|971309_972053_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.3	4.7e-13
WP_005415509.1|972205_972445_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	5.9e-10
WP_019338749.1|972588_973851_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010483816.1|973943_975308_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_053442583.1|975429_976491_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_053442584.1|976487_977153_+	dTMP kinase	NA	W8D0J5	Erwinia_phage	34.9	7.2e-21
WP_053442585.1|977149_978106_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_005412452.1|978102_978456_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_049453542.1|978749_979313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053442586.1|979365_979773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005408320.1|980338_980719_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_053442587.1|980750_981824_-|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	51.0	3.0e-93
WP_010483798.1|981814_982030_-|tail	tail protein X	tail	A0A219Y9W1	Aeromonas_phage	47.0	2.2e-08
WP_049410185.1|982013_982481_-|tail	phage tail protein	tail	A4PE53	Ralstonia_virus	30.4	1.3e-08
WP_053442588.1|982483_984955_-|tail	phage tail tape measure protein	tail	K4ICR4	Acidithiobacillus_phage	26.6	2.9e-22
WP_019336908.1|985075_985366_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	58.5	4.2e-18
WP_010483789.1|985443_985947_-|tail	phage major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	50.6	3.1e-40
WP_010483787.1|985949_987149_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	D5LGY7	Escherichia_phage	53.8	1.1e-125
WP_019336909.1|987256_987847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010483783.1|987851_989369_-|tail	tail fiber protein	tail	V9IQX0	Stenotrophomonas_phage	56.8	2.7e-71
WP_019336910.1|989376_990678_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	52.0	7.4e-46
WP_010483779.1|990670_991567_-|plate	baseplate J/gp47 family protein	plate	V5YTH6	Pseudomonas_phage	58.1	1.8e-83
WP_010483777.1|991569_991908_-	GPW/gp25 family protein	NA	A0A193GYY8	Enterobacter_phage	61.3	1.0e-31
WP_053442589.1|991960_992551_-|plate	phage baseplate assembly protein V	plate	A0A193GYL5	Enterobacter_phage	37.7	2.8e-24
WP_053442590.1|992547_993102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158003730.1|993212_993518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053442591.1|993459_993837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049410196.1|993833_994319_-	glycoside hydrolase family 104 protein	NA	D5LH07	Escherichia_phage	53.8	1.0e-40
WP_053442592.1|994315_994666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029550699.1|994662_995112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019336915.1|995451_995835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019336916.1|995988_996627_-	hypothetical protein	NA	A0A1V0DYI4	Shewanella_phage	41.8	2.0e-20
WP_010483758.1|996668_996896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049410201.1|996971_997247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049410203.1|997246_999583_-	toprim domain-containing protein	NA	V5YUR8	Pseudomonas_phage	42.1	1.4e-135
>prophage 3
NZ_CP011306	Stenotrophomonas maltophilia strain ISMMS2R chromosome, complete genome	4509724	2215206	2222823	4509724		Stenotrophomonas_phage(57.14%)	13	NA	NA
WP_100050554.1|2215206_2215851_-	hypothetical protein	NA	S0F2J2	Stenotrophomonas_phage	57.5	2.8e-30
WP_187296455.1|2215983_2216148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187296456.1|2216144_2216306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187296460.1|2216681_2217560_+	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	74.7	2.9e-126
WP_053443007.1|2217556_2217847_+	DNA-binding protein	NA	O80282	Xanthomonas_phage	63.6	3.2e-26
WP_053443008.1|2217850_2218072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053443009.1|2218089_2218332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148563089.1|2218595_2219840_+	hypothetical protein	NA	S0F309	Stenotrophomonas_phage	41.4	7.1e-46
WP_053443011.1|2219839_2220160_+	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_053443012.1|2220156_2221347_+	zonular occludens toxin family protein	NA	S0F3F8	Stenotrophomonas_phage	37.3	6.5e-57
WP_053443013.1|2221343_2221970_+	conjugal transfer protein	NA	A0A1W6DY89	Xanthomonas_phage	57.2	2.5e-55
WP_053443014.1|2221966_2222299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100050555.1|2222484_2222823_-	hypothetical protein	NA	S0F2N2	Stenotrophomonas_phage	88.4	2.2e-50
