assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	1	569114-569315	1	PILER-CR	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	GCCGACAACCTGGCCCGCCAGGAAGCCGAGC	31	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA|122aa|up_0|NZ_CP011010.1_568400_568766_+,NA	NA|121aa|up_9|NZ_CP011010.1_553890_554253_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|880aa|up_8|NZ_CP011010.1_554446_557086_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|865aa|up_7|NZ_CP011010.1_557160_559755_+	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|472aa|up_6|NZ_CP011010.1_560292_561708_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|330aa|up_5|NZ_CP011010.1_562581_563571_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|223aa|up_4|NZ_CP011010.1_563585_564254_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|487aa|up_3|NZ_CP011010.1_564303_565764_-	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|428aa|up_2|NZ_CP011010.1_565744_567028_-	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|376aa|up_1|NZ_CP011010.1_567151_568279_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|122aa|up_0|NZ_CP011010.1_568400_568766_+	NA	NA|79aa|down_0|NZ_CP011010.1_569970_570207_+	pfam04325, DUF465, Protein of unknown function (DUF465)	NA|457aa|down_1|NZ_CP011010.1_570508_571879_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|398aa|down_2|NZ_CP011010.1_572012_573206_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme	NA|467aa|down_3|NZ_CP011010.1_573207_574608_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|263aa|down_4|NZ_CP011010.1_574607_575396_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|253aa|down_5|NZ_CP011010.1_575398_576157_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|844aa|down_6|NZ_CP011010.1_576137_578669_+	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|211aa|down_7|NZ_CP011010.1_578665_579298_+	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family	NA|375aa|down_8|NZ_CP011010.1_579301_580426_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|346aa|down_9|NZ_CP011010.1_580428_581466_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	2	846314-846419	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	TCTGCCGGCCAGCGGCCGGCACTACC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA,NA|140aa|down_0|NZ_CP011010.1_846449_846869_-,NA|219aa|down_3|NZ_CP011010.1_848867_849524_+	NA|185aa|up_9|NZ_CP011010.1_837096_837651_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|312aa|up_8|NZ_CP011010.1_837647_838583_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|194aa|up_7|NZ_CP011010.1_838579_839161_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|NZ_CP011010.1_839492_841814_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|360aa|up_5|NZ_CP011010.1_841865_842945_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|154aa|up_4|NZ_CP011010.1_843008_843470_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|109aa|up_3|NZ_CP011010.1_843474_843801_-	pfam11859, DUF3379, Protein of unknown function (DUF3379)	NA|195aa|up_2|NZ_CP011010.1_843797_844382_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|NZ_CP011010.1_844480_844801_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|NZ_CP011010.1_844797_846258_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|NZ_CP011010.1_846449_846869_-	NA	NA|184aa|down_1|NZ_CP011010.1_846991_847543_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|NZ_CP011010.1_847602_848697_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|219aa|down_3|NZ_CP011010.1_848867_849524_+	NA	NA|112aa|down_4|NZ_CP011010.1_849520_849856_+	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|341aa|down_5|NZ_CP011010.1_849857_850880_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|580aa|down_6|NZ_CP011010.1_851257_852997_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|162aa|down_7|NZ_CP011010.1_853188_853674_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_8|NZ_CP011010.1_853753_854089_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_9|NZ_CP011010.1_854085_854679_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	3	1470522-1470695	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	GTGCCAACCTCGGTTGGCACGCTCCATCAG	30	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA|98aa|up_5|NZ_CP011010.1_1465154_1465448_-,NA	NA|333aa|up_9|NZ_CP011010.1_1460877_1461876_-	PRK00325, algL, polysaccharide lyase	NA|603aa|up_8|NZ_CP011010.1_1462020_1463829_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|119aa|up_7|NZ_CP011010.1_1463941_1464298_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|261aa|up_6|NZ_CP011010.1_1464330_1465113_+	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|98aa|up_5|NZ_CP011010.1_1465154_1465448_-	NA	NA|315aa|up_4|NZ_CP011010.1_1465517_1466462_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|291aa|up_3|NZ_CP011010.1_1466577_1467450_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|301aa|up_2|NZ_CP011010.1_1468108_1469011_-	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|122aa|up_1|NZ_CP011010.1_1469147_1469513_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|330aa|up_0|NZ_CP011010.1_1469509_1470499_+	pfam13796, Sensor, Putative sensor	NA|436aa|down_0|NZ_CP011010.1_1470699_1472007_-	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular	NA|197aa|down_1|NZ_CP011010.1_1472100_1472691_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|152aa|down_2|NZ_CP011010.1_1472840_1473296_+	COG1981, COG1981, Predicted membrane protein [Function unknown]	NA|320aa|down_3|NZ_CP011010.1_1473621_1474581_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|1194aa|down_4|NZ_CP011010.1_1474714_1478296_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|222aa|down_5|NZ_CP011010.1_1478565_1479231_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|420aa|down_6|NZ_CP011010.1_1479227_1480487_-	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|264aa|down_7|NZ_CP011010.1_1480483_1481275_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|153aa|down_8|NZ_CP011010.1_1481291_1481750_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|341aa|down_9|NZ_CP011010.1_1481746_1482769_-	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	4	1939399-1939495	3	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Unclear	GGTAGATCCACGCCGTGCGTGGAT	24	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA,NA|110aa|down_9|NZ_CP011010.1_1952410_1952740_-	NA|293aa|up_9|NZ_CP011010.1_1928048_1928927_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|163aa|up_8|NZ_CP011010.1_1928933_1929422_-	pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671	NA|70aa|up_7|NZ_CP011010.1_1929723_1929933_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|230aa|up_6|NZ_CP011010.1_1930115_1930805_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|522aa|up_5|NZ_CP011010.1_1930837_1932403_+	PRK00029, PRK00029, YdiU family protein	NA|179aa|up_4|NZ_CP011010.1_1932972_1933509_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	cas3|459aa|up_3|NZ_CP011010.1_1933683_1935060_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|360aa|up_2|NZ_CP011010.1_1935144_1936224_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|292aa|up_1|NZ_CP011010.1_1936326_1937202_+	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|627aa|up_0|NZ_CP011010.1_1937490_1939371_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|154aa|down_0|NZ_CP011010.1_1939543_1940005_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|130aa|down_1|NZ_CP011010.1_1940014_1940404_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|384aa|down_2|NZ_CP011010.1_1940609_1941761_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1174aa|down_3|NZ_CP011010.1_1941757_1945279_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1027aa|down_4|NZ_CP011010.1_1945275_1948356_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|411aa|down_5|NZ_CP011010.1_1948513_1949746_-	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|177aa|down_6|NZ_CP011010.1_1949738_1950269_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|296aa|down_7|NZ_CP011010.1_1950283_1951171_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|346aa|down_8|NZ_CP011010.1_1951333_1952371_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|110aa|down_9|NZ_CP011010.1_1952410_1952740_-	NA
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	5	3204064-3204192	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	GGCGCCGGTGGCGGCCAGGGCCGT	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA,NA|146aa|down_0|NZ_CP011010.1_3204637_3205075_-	NA|279aa|up_9|NZ_CP011010.1_3190866_3191703_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|up_8|NZ_CP011010.1_3191699_3192581_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|447aa|up_7|NZ_CP011010.1_3192577_3193918_-	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|535aa|up_6|NZ_CP011010.1_3193922_3195527_-	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1019aa|up_5|NZ_CP011010.1_3195778_3198835_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|346aa|up_4|NZ_CP011010.1_3198911_3199949_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|84aa|up_3|NZ_CP011010.1_3200098_3200350_-	pfam01722, BolA, BolA-like protein	NA|100aa|up_2|NZ_CP011010.1_3200370_3200670_-	PRK11370, PRK11370, YciI family protein	NA|302aa|up_1|NZ_CP011010.1_3201046_3201952_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|292aa|up_0|NZ_CP011010.1_3201965_3202841_+	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair]	NA|146aa|down_0|NZ_CP011010.1_3204637_3205075_-	NA	NA|269aa|down_1|NZ_CP011010.1_3205101_3205908_-	cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)	NA|383aa|down_2|NZ_CP011010.1_3205922_3207071_-	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|210aa|down_3|NZ_CP011010.1_3207250_3207880_+	PRK13543, PRK13543, heme ABC exporter ATP-binding protein CcmA	NA|232aa|down_4|NZ_CP011010.1_3207876_3208572_+	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|257aa|down_5|NZ_CP011010.1_3208615_3209386_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|63aa|down_6|NZ_CP011010.1_3209382_3209571_+	pfam04995, CcmD, Heme exporter protein D (CcmD)	NA|154aa|down_7|NZ_CP011010.1_3209567_3210029_+	PRK13254, PRK13254, cytochrome c maturation protein CcmE	NA|640aa|down_8|NZ_CP011010.1_3210029_3211949_+	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|206aa|down_9|NZ_CP011010.1_3211957_3212575_+	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	6	3370625-3370776	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	GTCGAGCAAGCTCGACTCTACGACT	25	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA|230aa|up_2|NZ_CP011010.1_3367704_3368394_-,NA|236aa|down_0|NZ_CP011010.1_3371866_3372574_-	NA|626aa|up_9|NZ_CP011010.1_3359774_3361652_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|382aa|up_8|NZ_CP011010.1_3361671_3362817_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|286aa|up_7|NZ_CP011010.1_3362809_3363667_+	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins	NA|161aa|up_6|NZ_CP011010.1_3363716_3364199_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|454aa|up_5|NZ_CP011010.1_3364460_3365822_-	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|292aa|up_4|NZ_CP011010.1_3365821_3366697_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|270aa|up_3|NZ_CP011010.1_3366893_3367703_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|230aa|up_2|NZ_CP011010.1_3367704_3368394_-	NA	NA|406aa|up_1|NZ_CP011010.1_3368390_3369608_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|295aa|up_0|NZ_CP011010.1_3369705_3370590_+	cd08482, PBP2_TrpI, The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold	NA|236aa|down_0|NZ_CP011010.1_3371866_3372574_-	NA	NA|1803aa|down_1|NZ_CP011010.1_3372570_3377979_-	pfam12458, DUF3686, ATPase involved in DNA repair	NA|673aa|down_2|NZ_CP011010.1_3378064_3380083_-	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]	NA|224aa|down_3|NZ_CP011010.1_3380082_3380754_-	pfam07290, DUF1449, Protein of unknown function (DUF1449)	NA|219aa|down_4|NZ_CP011010.1_3380941_3381598_-	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|257aa|down_5|NZ_CP011010.1_3381594_3382365_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|121aa|down_6|NZ_CP011010.1_3382397_3382760_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|670aa|down_7|NZ_CP011010.1_3382786_3384796_-	COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_8|NZ_CP011010.1_3384900_3385929_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|346aa|down_9|NZ_CP011010.1_3386021_3387059_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	7	3487327-3487510	1	CRT	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	CTGCCGCTGACCGTATTGA	19	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA|61aa|up_0|NZ_CP011010.1_3486712_3486895_+,NA|178aa|down_0|NZ_CP011010.1_3487836_3488370_-,NA|60aa|down_2|NZ_CP011010.1_3489071_3489251_+	NA|855aa|up_9|NZ_CP011010.1_3477293_3479858_+	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|449aa|up_8|NZ_CP011010.1_3480059_3481406_-	COG3946, VirJ, Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]	NA|206aa|up_7|NZ_CP011010.1_3481484_3482102_-	pfam06197, DUF998, Protein of unknown function (DUF998)	NA|58aa|up_6|NZ_CP011010.1_3482098_3482272_-	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal	NA|201aa|up_5|NZ_CP011010.1_3482321_3482924_-	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown]	NA|384aa|up_4|NZ_CP011010.1_3483153_3484305_+	sd00006, TPR, Tetratricopeptide repeat	NA|112aa|up_3|NZ_CP011010.1_3484312_3484648_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|454aa|up_2|NZ_CP011010.1_3484816_3486178_+	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|98aa|up_1|NZ_CP011010.1_3486407_3486701_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|61aa|up_0|NZ_CP011010.1_3486712_3486895_+	NA	NA|178aa|down_0|NZ_CP011010.1_3487836_3488370_-	NA	NA|193aa|down_1|NZ_CP011010.1_3488366_3488945_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|60aa|down_2|NZ_CP011010.1_3489071_3489251_+	NA	NA|198aa|down_3|NZ_CP011010.1_3489284_3489878_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|89aa|down_4|NZ_CP011010.1_3490445_3490712_-	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein	NA|186aa|down_5|NZ_CP011010.1_3490882_3491440_-	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)	NA|167aa|down_6|NZ_CP011010.1_3491502_3492003_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|233aa|down_7|NZ_CP011010.1_3492059_3492758_+	cd02555, PSSA_1, Pseudouridine synthase, a subgroup of the RsuA family	NA|530aa|down_8|NZ_CP011010.1_3492849_3494439_+	cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|359aa|down_9|NZ_CP011010.1_3494442_3495519_-	pfam08668, HDOD, HDOD domain
GCF_001274595.1_ASM127459v1	NZ_CP011010	Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence	8	4525825-4525923	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	Orphan	GTGCCGACCAAGGTCGGCACCTACC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG	NA|106aa|up_9|NZ_CP011010.1_4515557_4515875_-,NA	NA|106aa|up_9|NZ_CP011010.1_4515557_4515875_-	NA	NA|348aa|up_8|NZ_CP011010.1_4516075_4517119_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|408aa|up_7|NZ_CP011010.1_4517186_4518410_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|260aa|up_6|NZ_CP011010.1_4518427_4519207_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|260aa|up_5|NZ_CP011010.1_4519236_4520016_+	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|295aa|up_4|NZ_CP011010.1_4520028_4520913_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|211aa|up_3|NZ_CP011010.1_4521033_4521666_-	cd06259, YdcF-like, YdcF-like	NA|321aa|up_2|NZ_CP011010.1_4521662_4522625_-	PLN02970, PLN02970, serine racemase	NA|164aa|up_1|NZ_CP011010.1_4522784_4523276_+	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	NA|630aa|up_0|NZ_CP011010.1_4523822_4525712_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|470aa|down_0|NZ_CP011010.1_4525956_4527366_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1050aa|down_1|NZ_CP011010.1_4527362_4530512_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|399aa|down_2|NZ_CP011010.1_4530523_4531720_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|468aa|down_3|NZ_CP011010.1_4531837_4533241_+	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|235aa|down_4|NZ_CP011010.1_4533237_4533942_+	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional	NA|177aa|down_5|NZ_CP011010.1_4534098_4534629_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|230aa|down_6|NZ_CP011010.1_4534752_4535442_+	pfam06271, RDD, RDD family	NA|331aa|down_7|NZ_CP011010.1_4535438_4536431_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|539aa|down_8|NZ_CP011010.1_4536420_4538037_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|395aa|down_9|NZ_CP011010.1_4538033_4539218_+	pfam14258, DUF4350, Domain of unknown function (DUF4350)
