assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001274535.1_ASM127453v1	NZ_CP012410	Leptotrichia sp. oral taxon 212 strain W10393 chromosome, complete genome	1	583604-586464	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	PD-DExK,cas10,csm3gr7	WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Type III-C,Type III-B,Type III-D,Type III-A	CATTTTAATAGTAGCAGAGTGTAATGTAAATAA,ATTTTAATAGTAGCAGAGTGTAATGTAAAT,ATTTTAATAGTAGCAGAGTGTAATGTAAAT,ATTTTAATAGTAGCAGAGTGTAATGTAAAT	33,30,30,30	0	0	NA	NA	NA:NA:NA:NA	40,43,43,40	43	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA,PD-DExK|337aa|down_0|NZ_CP012410.1_586817_587828_+,NA|292aa|down_4|NZ_CP012410.1_591781_592657_+,NA|229aa|down_7|NZ_CP012410.1_594012_594699_+,NA|123aa|down_9|NZ_CP012410.1_595852_596221_+	NA|345aa|up_9|NZ_CP012410.1_571075_572110_+	PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional	NA|584aa|up_8|NZ_CP012410.1_572130_573882_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|332aa|up_7|NZ_CP012410.1_573975_574971_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|463aa|up_6|NZ_CP012410.1_575209_576598_+	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter	NA|125aa|up_5|NZ_CP012410.1_576551_576926_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|321aa|up_4|NZ_CP012410.1_577144_578107_+	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|299aa|up_3|NZ_CP012410.1_578174_579071_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|282aa|up_2|NZ_CP012410.1_579081_579927_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|454aa|up_1|NZ_CP012410.1_580019_581381_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|549aa|up_0|NZ_CP012410.1_581457_583104_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	PD-DExK|337aa|down_0|NZ_CP012410.1_586817_587828_+	NA	cas10|656aa|down_1|NZ_CP012410.1_587846_589814_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm3gr7|233aa|down_2|NZ_CP012410.1_589867_590566_+	pfam03787, RAMPs, RAMP superfamily	NA|405aa|down_3|NZ_CP012410.1_590577_591792_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|292aa|down_4|NZ_CP012410.1_591781_592657_+	NA	NA|135aa|down_5|NZ_CP012410.1_592971_593376_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|123aa|down_6|NZ_CP012410.1_593359_593728_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|229aa|down_7|NZ_CP012410.1_594012_594699_+	NA	NA|298aa|down_8|NZ_CP012410.1_594859_595753_+	pfam14503, YhfZ_C, YhfZ C-terminal domain	NA|123aa|down_9|NZ_CP012410.1_595852_596221_+	NA
GCF_001274535.1_ASM127453v1	NZ_CP012410	Leptotrichia sp. oral taxon 212 strain W10393 chromosome, complete genome	2	1032710-1032815	2	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Orphan	GGCAGACCATCATTTGACAGGGATA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA|182aa|up_4|NZ_CP012410.1_1029324_1029870_+,NA|206aa|down_7|NZ_CP012410.1_1045023_1045641_+	NA|249aa|up_9|NZ_CP012410.1_1024681_1025428_+	COG3774, OCH1, Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]	NA|258aa|up_8|NZ_CP012410.1_1025453_1026227_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|123aa|up_7|NZ_CP012410.1_1026353_1026722_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|190aa|up_6|NZ_CP012410.1_1026749_1027319_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|534aa|up_5|NZ_CP012410.1_1027629_1029231_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|182aa|up_4|NZ_CP012410.1_1029324_1029870_+	NA	NA|162aa|up_3|NZ_CP012410.1_1030156_1030642_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|367aa|up_2|NZ_CP012410.1_1030641_1031742_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|176aa|up_1|NZ_CP012410.1_1031745_1032273_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|99aa|up_0|NZ_CP012410.1_1032269_1032566_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|121aa|down_0|NZ_CP012410.1_1035235_1035598_+	pfam02033, RBFA, Ribosome-binding factor A	NA|559aa|down_1|NZ_CP012410.1_1035601_1037278_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|425aa|down_2|NZ_CP012410.1_1037394_1038669_+	PRK01490, tig, trigger factor; Provisional	NA|190aa|down_3|NZ_CP012410.1_1038681_1039251_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|406aa|down_4|NZ_CP012410.1_1039281_1040499_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|793aa|down_5|NZ_CP012410.1_1040620_1042999_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|424aa|down_6|NZ_CP012410.1_1043113_1044385_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|206aa|down_7|NZ_CP012410.1_1045023_1045641_+	NA	NA|287aa|down_8|NZ_CP012410.1_1045659_1046520_+	PRK06740, PRK06740, histidinol phosphate phosphatase domain-containing protein	NA|185aa|down_9|NZ_CP012410.1_1047564_1048119_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
GCF_001274535.1_ASM127453v1	NZ_CP012410	Leptotrichia sp. oral taxon 212 strain W10393 chromosome, complete genome	3	1794885-1805302	2,3,3	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	Unclear	NNATTTACAATACACTTTGCTACTATTAATAC,ATTTACAATACACTTTGCTACTATTAATAC,GTATTAATAGTAGCAAAGTGTATTGTAAAT	32,30,30	0	0	NA	NA	NA:NA:NA	158,158,157	158	Unclear	WYL,cas3,PD-DExK,cas10,csm3gr7,DinG,DEDDh,RT,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3	NA,NA	NA|440aa|up_9|NZ_CP012410.1_1784113_1785433_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|316aa|up_8|NZ_CP012410.1_1785554_1786502_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|230aa|up_7|NZ_CP012410.1_1787102_1787792_-	COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	NA|272aa|up_6|NZ_CP012410.1_1787804_1788620_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|up_5|NZ_CP012410.1_1788707_1789598_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|434aa|up_4|NZ_CP012410.1_1789622_1790924_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|333aa|up_3|NZ_CP012410.1_1791007_1792006_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|72aa|up_2|NZ_CP012410.1_1792279_1792495_+	pfam01206, TusA, Sulfurtransferase TusA	NA|296aa|up_1|NZ_CP012410.1_1792484_1793372_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|325aa|up_0|NZ_CP012410.1_1793589_1794564_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	cas2|93aa|down_0|NZ_CP012410.1_1805505_1805784_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_1|NZ_CP012410.1_1805785_1806778_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|163aa|down_2|NZ_CP012410.1_1806867_1807356_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|806aa|down_3|NZ_CP012410.1_1807385_1809803_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|255aa|down_4|NZ_CP012410.1_1809822_1810587_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|299aa|down_5|NZ_CP012410.1_1810589_1811486_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|589aa|down_6|NZ_CP012410.1_1811488_1813255_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|243aa|down_7|NZ_CP012410.1_1813282_1814011_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|309aa|down_8|NZ_CP012410.1_1814442_1815369_-	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|270aa|down_9|NZ_CP012410.1_1815381_1816191_-	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates
