The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	80186	108138	4589485	transposase	Acidithiobacillus_phage(37.5%)	29	NA	NA
WP_145976116.1|80186_81725_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.7	1.6e-151
WP_053378012.1|81724_82489_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	60.2	2.0e-75
WP_083447618.1|82418_83000_-	DedA family protein	NA	NA	NA	NA	NA
WP_053378013.1|83139_83751_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_145976117.1|83747_85394_-	MCE family protein	NA	NA	NA	NA	NA
WP_053378015.1|85383_86022_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
WP_053378016.1|86018_86642_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
WP_053378017.1|86664_87549_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_083447620.1|87664_89125_-	catalase	NA	A0A2K9L0T1	Tupanvirus	45.3	2.1e-97
WP_083447621.1|89215_89680_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_053378018.1|89808_90822_-	nitrite reductase, copper-containing	NA	NA	NA	NA	NA
WP_083447622.1|91000_91642_-	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_053381932.1|92361_92712_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	50.0	7.6e-22
WP_187299305.1|92708_92870_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_083447624.1|93011_93260_-|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.1	9.8e-08
WP_083447625.1|93670_93874_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_187299304.1|93866_94130_+|transposase	transposase	transposase	S5VXX4	Leptospira_phage	42.4	4.7e-08
WP_083447627.1|94336_94954_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_053378020.1|95609_96929_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_053378021.1|97177_97675_-	thiol-disulfide isomerase	NA	NA	NA	NA	NA
WP_187299303.1|97721_98237_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_053381933.1|98558_100028_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	34.0	1.1e-53
WP_053378023.1|100214_100832_-	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_187299302.1|101568_102123_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_083448309.1|102565_103171_+	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_053378026.1|103797_104865_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_083447629.1|104920_105382_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_145976118.1|106055_106466_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_145976116.1|106599_108138_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.7	1.6e-151
>prophage 2
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	1215738	1224029	4589485		uncultured_virus(33.33%)	8	NA	NA
WP_053379004.1|1215738_1216833_-	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.2	7.0e-05
WP_053379005.1|1216948_1217317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053379006.1|1217442_1219080_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	61.2	1.6e-170
WP_053379007.1|1219121_1219421_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	50.6	1.3e-14
WP_053379008.1|1219661_1220660_-	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	30.7	4.5e-27
WP_053379009.1|1220865_1222062_+	NarK/NasA family nitrate transporter	NA	NA	NA	NA	NA
WP_053379010.1|1222150_1223359_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.4	8.9e-102
WP_083447791.1|1223492_1224029_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	46.2	4.0e-30
>prophage 3
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	2014078	2026394	4589485	tRNA	Synechococcus_phage(28.57%)	8	NA	NA
WP_053379723.1|2014078_2018764_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	35.4	1.3e-07
WP_053379724.1|2018760_2019933_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2D2W2B8	Stenotrophomonas_phage	25.8	1.4e-14
WP_053379725.1|2019948_2021265_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A0E3F0U6	Synechococcus_phage	35.8	2.9e-50
WP_053379726.1|2021279_2022266_-	NAD-dependent epimerase/dehydratase family protein	NA	M4R1H4	Synechococcus_phage	31.7	3.9e-39
WP_083447912.1|2022273_2023305_-	GDP-mannose 4,6-dehydratase	NA	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	58.7	9.8e-110
WP_053379727.1|2023319_2024291_-	SDR family NAD(P)-dependent oxidoreductase	NA	M1NML0	Moumouvirus	34.7	4.4e-43
WP_053379728.1|2024277_2025282_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_053379729.1|2025278_2026394_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	36.0	2.1e-36
>prophage 4
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	2787241	2795732	4589485	transposase	Bacillus_phage(28.57%)	11	NA	NA
WP_083448017.1|2787241_2788063_-	DEAD/DEAH box helicase	NA	A0A2H4J643	uncultured_Caudovirales_phage	61.4	1.7e-67
WP_053380379.1|2788059_2788287_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_083448018.1|2788462_2789233_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.1	1.1e-09
WP_053380380.1|2789543_2790602_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_053380381.1|2790623_2791580_-|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	49.4	1.9e-78
WP_053380382.1|2791787_2793017_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	30.1	2.2e-47
WP_053380383.1|2793051_2793363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053380384.1|2793409_2793808_-	response regulator	NA	W8CYM9	Bacillus_phage	31.5	4.3e-05
WP_053380385.1|2793917_2794220_-	DUF2294 family protein	NA	NA	NA	NA	NA
WP_053380386.1|2794279_2794705_-	response regulator	NA	W8CYM9	Bacillus_phage	34.7	5.6e-11
WP_083448020.1|2794655_2795732_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	38.0	2.2e-43
>prophage 5
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	3241451	3249527	4589485	tRNA	Paramecium_bursaria_Chlorella_virus(16.67%)	6	NA	NA
WP_053380778.1|3241451_3243281_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	42.6	6.0e-118
WP_083448095.1|3243329_3244895_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	31.5	1.1e-19
WP_083448096.1|3244960_3245674_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	29.5	1.2e-13
WP_053380780.1|3245824_3246412_+	AAA family ATPase	NA	A0A2H4P766	Pseudomonas_phage	32.6	1.7e-13
WP_053380781.1|3246474_3247503_+	DNA polymerase III subunit delta'	NA	D9ZNI9	Clostridium_phage	29.7	6.1e-11
WP_053380782.1|3247538_3249527_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.8	6.6e-94
>prophage 6
NZ_CP011801	Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome	4589485	4375822	4429908	4589485	integrase,transposase,tRNA	Acidithiobacillus_phage(16.67%)	50	4372585:4372600	4414894:4414909
4372585:4372600	attL	TTCGACGAGCAGCACG	NA	NA	NA	NA
WP_053381773.1|4375822_4376272_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_145976472.1|4376306_4376834_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	36.2	1.3e-17
WP_053381775.1|4376839_4378456_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_053381776.1|4378509_4379157_-	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_187299300.1|4379156_4379951_-	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_053381778.1|4380061_4380661_-	LemA family protein	NA	NA	NA	NA	NA
WP_053381779.1|4380803_4381337_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_053381780.1|4381439_4382228_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_053381781.1|4382260_4384171_-	fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_083448290.1|4384170_4384848_-	succinate dehydrogenase cytochrome b subunit	NA	NA	NA	NA	NA
WP_053381782.1|4384920_4386174_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	51.4	3.1e-09
WP_053381783.1|4386298_4387873_+	glycoside hydrolase family 32 protein	NA	F8WPR5	Bacillus_phage	34.2	5.8e-61
WP_053381784.1|4388373_4389720_+	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA	NA
WP_053381785.1|4389703_4390978_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_083448408.1|4391138_4392197_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_053382195.1|4392238_4392985_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_053381786.1|4392989_4393754_+	ABC transporter ATP-binding protein	NA	M1I4Q1	Paramecium_bursaria_Chlorella_virus	31.1	5.2e-07
WP_053381787.1|4393741_4395499_+	phosphotransferase	NA	NA	NA	NA	NA
WP_187299301.1|4395482_4396640_+	NTP transferase domain-containing protein	NA	M4QRS4	Synechococcus_phage	49.1	5.3e-27
WP_053381789.1|4396647_4397661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053381790.1|4397670_4398744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053381791.1|4398775_4399249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053381792.1|4399405_4401709_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_053381793.1|4401740_4402475_-	thymidylate kinase	NA	NA	NA	NA	NA
WP_053382196.1|4402422_4403151_-	thymidylate kinase	NA	A0A1L7N147	Ralstonia_phage	33.3	3.2e-06
WP_053381794.1|4403174_4404728_-	Ppx/GppA family phosphatase	NA	NA	NA	NA	NA
WP_083447634.1|4405013_4405526_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_145976119.1|4405600_4406401_+	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_053378032.1|4406409_4408599_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_083447632.1|4408571_4410164_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_053378030.1|4410164_4411301_+	TniQ family protein	NA	NA	NA	NA	NA
WP_083447631.1|4411254_4413009_+	TnsD family Tn7-like transposition protein	NA	NA	NA	NA	NA
WP_053378012.1|4413367_4414132_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	60.2	2.0e-75
WP_145976116.1|4414131_4415670_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.7	1.6e-151
4414894:4414909	attR	TTCGACGAGCAGCACG	NA	NA	NA	NA
WP_145976118.1|4415803_4416214_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_083447629.1|4416887_4417349_-	thermonuclease family protein	NA	NA	NA	NA	NA
WP_053378026.1|4417404_4418472_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_083448309.1|4419098_4419704_-	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_187299302.1|4420146_4420701_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_053378023.1|4421437_4422055_+	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_053381933.1|4422241_4423711_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	34.0	1.1e-53
WP_187299303.1|4424032_4424548_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_053378021.1|4424594_4425092_+	thiol-disulfide isomerase	NA	NA	NA	NA	NA
WP_053378020.1|4425340_4426660_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_083447627.1|4427315_4427933_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_187299304.1|4428139_4428403_-|transposase	transposase	transposase	S5VXX4	Leptospira_phage	42.4	4.7e-08
WP_083447625.1|4428395_4428599_-	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_083447624.1|4429009_4429258_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.1	9.8e-08
WP_187299305.1|4429399_4429561_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_053381932.1|4429557_4429908_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	50.0	7.6e-22
