assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001244395.1_ASM124439v1	NZ_CP012148	Lacticaseibacillus paracasei strain L9 chromosome, complete genome	1	756306-756436	1	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|48aa|up_0|NZ_CP012148.1_756001_756145_+,NA|78aa|down_1|NZ_CP012148.1_757362_757596_-,NA|60aa|down_5|NZ_CP012148.1_760692_760872_+,NA|175aa|down_6|NZ_CP012148.1_760949_761474_+,NA|354aa|down_9|NZ_CP012148.1_763406_764468_-	NA|227aa|up_9|NZ_CP012148.1_745957_746638_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP012148.1_746659_747598_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP012148.1_747712_748714_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP012148.1_748752_749271_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP012148.1_749315_749744_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP012148.1_749748_750525_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP012148.1_750969_751596_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP012148.1_751656_752778_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP012148.1_752777_755903_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP012148.1_756001_756145_+	NA	NA|159aa|down_0|NZ_CP012148.1_756892_757369_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP012148.1_757362_757596_-	NA	NA|368aa|down_2|NZ_CP012148.1_757925_759029_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP012148.1_759239_760025_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP012148.1_760027_760696_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP012148.1_760692_760872_+	NA	NA|175aa|down_6|NZ_CP012148.1_760949_761474_+	NA	NA|211aa|down_7|NZ_CP012148.1_761707_762340_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP012148.1_762411_763233_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP012148.1_763406_764468_-	NA
GCF_001244395.1_ASM124439v1	NZ_CP012148	Lacticaseibacillus paracasei strain L9 chromosome, complete genome	2	1957815-1957932	2	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	NA,NA|125aa|down_1|NZ_CP012148.1_1960835_1961210_-,NA|141aa|down_2|NZ_CP012148.1_1961349_1961772_-,NA|56aa|down_7|NZ_CP012148.1_1967474_1967642_-	NA|887aa|up_9|NZ_CP012148.1_1941840_1944501_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_8|NZ_CP012148.1_1944809_1945967_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|398aa|up_7|NZ_CP012148.1_1947061_1948255_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_6|NZ_CP012148.1_1948258_1949722_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NZ_CP012148.1_1950167_1950869_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_CP012148.1_1950893_1952039_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_CP012148.1_1952145_1952943_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_CP012148.1_1952955_1954932_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP012148.1_1955260_1956088_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP012148.1_1956149_1957616_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP012148.1_1958091_1960410_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP012148.1_1960835_1961210_-	NA	NA|141aa|down_2|NZ_CP012148.1_1961349_1961772_-	NA	NA|457aa|down_3|NZ_CP012148.1_1962394_1963765_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|379aa|down_4|NZ_CP012148.1_1963859_1964996_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_5|NZ_CP012148.1_1965104_1965422_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_6|NZ_CP012148.1_1965592_1967260_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_7|NZ_CP012148.1_1967474_1967642_-	NA	NA|704aa|down_8|NZ_CP012148.1_1967677_1969789_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|164aa|down_9|NZ_CP012148.1_1969775_1970267_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]
GCF_001244395.1_ASM124439v1	NZ_CP012148	Lacticaseibacillus paracasei strain L9 chromosome, complete genome	3	2302452-2305523	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	Type II-C,Type II-B,Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	46,46,17	46	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,WYL,csa5gr11,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|367aa|up_0|NZ_CP012148.1_2301070_2302171_-,NA|265aa|down_4|NZ_CP012148.1_2311835_2312630_-,NA|389aa|down_5|NZ_CP012148.1_2312630_2313797_-,NA|49aa|down_7|NZ_CP012148.1_2314639_2314786_+	NA|444aa|up_9|NZ_CP012148.1_2288134_2289466_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_8|NZ_CP012148.1_2289671_2291090_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_7|NZ_CP012148.1_2291380_2291947_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP012148.1_2292073_2293522_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP012148.1_2293692_2295531_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP012148.1_2295982_2296840_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP012148.1_2296977_2298609_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP012148.1_2298605_2300297_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP012148.1_2300493_2300919_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP012148.1_2301070_2302171_-	NA	csn2|226aa|down_0|NZ_CP012148.1_2305547_2306225_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP012148.1_2306221_2306527_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP012148.1_2306504_2307410_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1361aa|down_3|NZ_CP012148.1_2307604_2311687_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NZ_CP012148.1_2311835_2312630_-	NA	NA|389aa|down_5|NZ_CP012148.1_2312630_2313797_-	NA	NA|125aa|down_6|NZ_CP012148.1_2314020_2314395_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|49aa|down_7|NZ_CP012148.1_2314639_2314786_+	NA	NA|576aa|down_8|NZ_CP012148.1_2314857_2316585_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP012148.1_2316565_2318308_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
