The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012201	Massilia sp. NR 4-1 chromosome, complete genome	6361416	2611728	2651861	6361416	plate,holin,tail	uncultured_Caudovirales_phage(40.0%)	50	NA	NA
WP_050408633.1|2611728_2612112_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_050408634.1|2612130_2612433_-	DUF883 family protein	NA	NA	NA	NA	NA
WP_050408635.1|2612487_2613024_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_050408636.1|2613042_2613915_-	OmpA family protein	NA	NA	NA	NA	NA
WP_050412451.1|2613949_2614324_-	DUF4398 domain-containing protein	NA	NA	NA	NA	NA
WP_050408637.1|2614503_2616579_+	AsmA family protein	NA	NA	NA	NA	NA
WP_190287806.1|2616665_2616887_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA	NA
WP_050408639.1|2616914_2617661_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_050408640.1|2617809_2618472_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_150119079.1|2618550_2618697_+	lmo0937 family membrane protein	NA	NA	NA	NA	NA
WP_050408641.1|2618803_2619490_+	OmpA family protein	NA	G3M9Z0	Bacillus_virus	36.0	4.0e-06
WP_050408642.1|2619513_2620059_+	DUF3617 domain-containing protein	NA	NA	NA	NA	NA
WP_050408643.1|2620148_2620985_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_190287807.1|2621051_2621894_-	porin	NA	NA	NA	NA	NA
WP_050408645.1|2622088_2624128_+	site-specific recombinase	NA	NA	NA	NA	NA
WP_050412452.1|2624132_2625518_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_150119080.1|2625585_2626167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050408647.1|2626292_2626517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050408648.1|2626517_2627426_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050412453.1|2627523_2628537_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_050408649.1|2628546_2629068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408650.1|2629358_2629589_+	membrane lipoprotein lipid attachment site-containing protein	NA	NA	NA	NA	NA
WP_050408651.1|2629608_2630430_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_050408652.1|2630447_2630900_-	lysozyme	NA	A0A0M5M782	Salmonella_phage	44.6	8.3e-21
WP_050408653.1|2630896_2631370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408654.1|2631366_2631630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150119081.1|2631629_2631992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408656.1|2632111_2633137_-	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	47.8	2.8e-80
WP_050408657.1|2633147_2633354_-|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	49.3	2.5e-12
WP_050408658.1|2633328_2634207_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	52.6	7.8e-31
WP_050408659.1|2634208_2636494_-|tail	phage tail tape measure protein	tail	A0A2H4JG00	uncultured_Caudovirales_phage	31.9	2.8e-24
WP_050408660.1|2636595_2636940_-|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	53.4	9.5e-17
WP_150119082.1|2636998_2637502_-|tail	phage major tail tube protein	tail	Q7M2A5	Pseudomonas_phage	61.1	1.6e-52
WP_050408662.1|2637517_2638687_-|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	73.1	1.1e-160
WP_150119083.1|2638784_2640086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408665.1|2640085_2640538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408666.1|2640547_2641750_-	hypothetical protein	NA	K4ICQ5	Acidithiobacillus_phage	41.0	1.5e-72
WP_050408667.1|2641763_2643689_-	DUF4815 domain-containing protein	NA	K4ICQ5	Acidithiobacillus_phage	44.6	4.2e-154
WP_050408668.1|2643703_2644186_-	hypothetical protein	NA	Q75QL7	Wolbachia_phage	54.5	1.1e-05
WP_082219465.1|2644187_2645297_-	hypothetical protein	NA	K4I1F8	Acidithiobacillus_phage	33.9	2.3e-24
WP_050408670.1|2645290_2646121_-|plate	baseplate J/gp47 family protein	plate	K4HZB7	Acidithiobacillus_phage	40.7	7.8e-41
WP_050408671.1|2646117_2646450_-	GPW/gp25 family protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	59.8	1.6e-29
WP_050408672.1|2646451_2646646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408673.1|2646709_2647288_-|plate	phage baseplate assembly protein V	plate	A0A2H4JFJ8	uncultured_Caudovirales_phage	40.7	1.5e-19
WP_050408674.1|2647291_2647813_-	hypothetical protein	NA	Q9JML9	Wolbachia_phage	39.1	1.1e-16
WP_150119266.1|2647971_2648640_-	hypothetical protein	NA	Q6JIF4	Burkholderia_virus	49.3	6.3e-49
WP_050412454.1|2648778_2649468_+	helix-turn-helix domain-containing protein	NA	E7C9R0	Salmonella_phage	30.7	1.2e-10
WP_050408676.1|2649469_2650180_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_050408677.1|2650442_2650691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050408678.1|2650715_2651861_-	HAMP domain-containing histidine kinase	NA	A0A1B0VMK3	Pseudomonas_phage	40.0	1.1e-64
>prophage 2
NZ_CP012201	Massilia sp. NR 4-1 chromosome, complete genome	6361416	2707995	2738537	6361416	head,protease,tail,transposase	Pseudomonas_phage(40.0%)	38	NA	NA
WP_150119087.1|2707995_2713962_-|tail	phage tail length tape measure family protein	tail	E4WL33	Enterobacteria_phage	25.9	1.1e-27
WP_050408727.1|2713964_2714228_-	DUF1799 domain-containing protein	NA	NA	NA	NA	NA
WP_050408728.1|2714323_2714668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408729.1|2714723_2715671_-	hypothetical protein	NA	A0A1B0T6E1	Thiobacimonas_phage	35.4	2.9e-47
WP_050408730.1|2715673_2715880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408731.1|2715876_2716299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408732.1|2716295_2716697_-	DUF1320 domain-containing protein	NA	C9DGP4	Escherichia_phage	43.5	3.2e-08
WP_050408733.1|2716700_2717006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050412458.1|2717059_2717983_-|head	Mu-like prophage major head subunit gpT family protein	head	A0A2H4J778	uncultured_Caudovirales_phage	69.3	7.0e-123
WP_050408734.1|2718170_2718572_-	hypothetical protein	NA	A0A0U5KRP3	unidentified_phage	65.6	8.4e-41
WP_050408735.1|2718608_2719685_-|protease	phage protease	protease	A0A0M5N0Q6	Ralstonia_phage	45.0	2.8e-67
WP_050408736.1|2719809_2720265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082219472.1|2720302_2721235_-	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_050408738.1|2721421_2722213_-	DNA adenine methylase	NA	Q5ZQW7	Pseudomonas_phage	64.1	3.2e-100
WP_082219473.1|2722130_2722367_-	Com family DNA-binding transcriptional regulator	NA	A0A1S5NPS9	Burkholderia_phage	65.0	7.9e-15
WP_050408739.1|2722489_2723029_-	phage virion morphogenesis protein	NA	NA	NA	NA	NA
WP_050412459.1|2723150_2724413_-	hypothetical protein	NA	Q5ZQY3	Pseudomonas_phage	40.4	2.9e-71
WP_190287808.1|2724427_2725996_-	DUF935 domain-containing protein	NA	A0A125RNC0	Pseudomonas_phage	45.8	1.2e-119
WP_050408741.1|2725992_2727762_-	hypothetical protein	NA	A0A0M4U7A1	Ralstonia_phage	71.8	3.0e-247
WP_050408742.1|2727758_2728268_-	DUF1804 family protein	NA	A0A0A1IX73	Pseudomonas_phage	46.0	7.9e-36
WP_050408743.1|2728267_2728594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082219476.1|2728615_2728855_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_050408744.1|2728933_2729350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408745.1|2729346_2729913_-	transglycosylase SLT domain-containing protein	NA	U6C6A5	Ralstonia_phage	70.8	7.4e-67
WP_082219477.1|2729972_2730239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408747.1|2730363_2730792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408748.1|2730800_2731235_-	regulatory protein GemA	NA	A0A0M5MRZ7	Ralstonia_phage	54.0	1.3e-31
WP_050408749.1|2731238_2731937_-	DUF2786 domain-containing protein	NA	L7P7W8	Pseudomonas_phage	32.5	2.3e-25
WP_050408750.1|2732044_2732347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050408751.1|2732488_2732770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408752.1|2732779_2733409_-	DUF3164 family protein	NA	B5TA85	Burkholderia_phage	63.1	3.9e-69
WP_050408753.1|2733439_2733781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408754.1|2733783_2734119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050408755.1|2734102_2734738_-	hypothetical protein	NA	X4YVB2	Pseudomonas_phage	42.9	1.7e-35
WP_050408756.1|2734748_2735489_-	ATP-binding protein	NA	Q38014	Pseudomonas_phage	54.1	2.8e-66
WP_150119090.1|2735535_2737680_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	Q38013	Pseudomonas_phage	54.6	7.6e-205
WP_050412461.1|2737676_2738156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082219478.1|2738222_2738537_-	helix-turn-helix domain-containing protein	NA	A0A2P9JZG5	Alteromonadaceae_phage	51.5	1.6e-18
>prophage 3
NZ_CP012201	Massilia sp. NR 4-1 chromosome, complete genome	6361416	3610434	3622178	6361416	tRNA	Moumouvirus(16.67%)	7	NA	NA
WP_050409463.1|3610434_3613128_-	DNA topoisomerase III	NA	A0A2P1ELA0	Moumouvirus	25.2	1.1e-22
WP_050409464.1|3613386_3613851_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_082219831.1|3613905_3615027_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	37.6	1.7e-27
WP_050409466.1|3615305_3616400_-	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	54.0	7.0e-13
WP_050409467.1|3616597_3617140_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.7	5.0e-20
WP_050409468.1|3617214_3618171_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	34.3	3.7e-10
WP_050409469.1|3618395_3622178_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.0	3.3e-09
>prophage 4
NZ_CP012201	Massilia sp. NR 4-1 chromosome, complete genome	6361416	6320479	6327038	6361416		uncultured_Mediterranean_phage(33.33%)	7	NA	NA
WP_050412217.1|6320479_6321217_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	55.4	1.3e-66
WP_050412218.1|6321213_6322083_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.8	3.3e-34
WP_050412219.1|6322097_6323030_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_050412220.1|6323038_6324049_+	RNA polymerase sigma factor RpoS	NA	A0A2I7SAT0	Vibrio_phage	35.0	1.2e-32
WP_050412221.1|6324172_6325516_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.9	1.5e-25
WP_050412222.1|6325705_6326386_-	Bax inhibitor-1/YccA family protein	NA	A2VCJ8	Vaccinia_virus	30.7	1.6e-12
WP_050412223.1|6326612_6327038_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	42.1	3.9e-20
