assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001190885.1_ASM119088v1	NZ_CP011329	Streptococcus agalactiae strain H002 chromosome, complete genome	1	625398-625614	1	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	TCTGGAATGGGATCAAAGC	19	0	0	NA	NA	NA	3	3	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|109aa|up_9|NZ_CP011329.1_616793_617120_+,NA|123aa|up_3|NZ_CP011329.1_620974_621343_+,NA|109aa|up_2|NZ_CP011329.1_621351_621678_+,NA|140aa|up_0|NZ_CP011329.1_622261_622681_+,NA|357aa|down_7|NZ_CP011329.1_636778_637849_+,NA|433aa|down_8|NZ_CP011329.1_637870_639169_+,NA|74aa|down_9|NZ_CP011329.1_639386_639608_+	NA|109aa|up_9|NZ_CP011329.1_616793_617120_+	NA	NA|430aa|up_8|NZ_CP011329.1_617187_618477_+	pfam04860, Phage_portal, Phage portal protein	NA|233aa|up_7|NZ_CP011329.1_618469_619168_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|403aa|up_6|NZ_CP011329.1_619181_620390_+	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|86aa|up_5|NZ_CP011329.1_620386_620644_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|113aa|up_4|NZ_CP011329.1_620643_620982_+	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|123aa|up_3|NZ_CP011329.1_620974_621343_+	NA	NA|109aa|up_2|NZ_CP011329.1_621351_621678_+	NA	NA|190aa|up_1|NZ_CP011329.1_621680_622250_+	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family	NA|140aa|up_0|NZ_CP011329.1_622261_622681_+	NA	NA|242aa|down_0|NZ_CP011329.1_626091_626817_+	COG4722, COG4722, Phage-related protein [Function unknown]	NA|972aa|down_1|NZ_CP011329.1_626816_629732_+	COG4926, PblB, Phage-related protein [Function unknown]	NA|619aa|down_2|NZ_CP011329.1_629744_631601_+	pfam05895, DUF859, Siphovirus protein of unknown function (DUF859)	NA|133aa|down_3|NZ_CP011329.1_631618_632017_+	pfam05105, Phage_holin_4_1, Bacteriophage holin family	NA|36aa|down_4|NZ_CP011329.1_633560_633668_+	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|414aa|down_5|NZ_CP011329.1_634205_635447_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|435aa|down_6|NZ_CP011329.1_635391_636696_+	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|357aa|down_7|NZ_CP011329.1_636778_637849_+	NA	NA|433aa|down_8|NZ_CP011329.1_637870_639169_+	NA	NA|74aa|down_9|NZ_CP011329.1_639386_639608_+	NA
GCF_001190885.1_ASM119088v1	NZ_CP011329	Streptococcus agalactiae strain H002 chromosome, complete genome	2	921391-922548	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	1	1	922021-922050	NZ_CP011329.1_1143966-1143995	II-A:II-A:II-A	15,16,17	17	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA	NA|124aa|up_9|NZ_CP011329.1_910772_911144_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP011329.1_911168_911549_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP011329.1_911640_912771_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP011329.1_912774_913512_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP011329.1_913512_914283_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP011329.1_914272_914929_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP011329.1_915316_919429_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP011329.1_919430_920300_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP011329.1_920296_920638_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP011329.1_920624_921290_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP011329.1_923105_923522_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP011329.1_923657_925490_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|378aa|down_2|NZ_CP011329.1_927667_928801_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|304aa|down_3|NZ_CP011329.1_929223_930135_+	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|220aa|down_4|NZ_CP011329.1_930234_930894_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_5|NZ_CP011329.1_930902_931367_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_6|NZ_CP011329.1_931366_931801_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_7|NZ_CP011329.1_931952_934745_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_8|NZ_CP011329.1_934744_935848_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_9|NZ_CP011329.1_935968_936607_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others
GCF_001190885.1_ASM119088v1	NZ_CP011329	Streptococcus agalactiae strain H002 chromosome, complete genome	3	2037671-2038131	3	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	CNTCTGGNTTANCNTCTGGNTTANCNTCT	29	2	2	2037832-2037850|2038084-2038102	NZ_CP011329.1_2038120-2038138|NZ_CP011329.1_2038144-2038162	NA	7	7	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|203aa|up_6|NZ_CP011329.1_2028305_2028914_+,NA	NA|231aa|up_9|NZ_CP011329.1_2020182_2020875_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|229aa|up_8|NZ_CP011329.1_2026141_2026828_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_7|NZ_CP011329.1_2026824_2028213_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_6|NZ_CP011329.1_2028305_2028914_+	NA	NA|834aa|up_5|NZ_CP011329.1_2029000_2031502_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_4|NZ_CP011329.1_2031878_2033126_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_3|NZ_CP011329.1_2033168_2034014_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|399aa|up_2|NZ_CP011329.1_2034218_2035415_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP011329.1_2035479_2036685_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|180aa|up_0|NZ_CP011329.1_2036731_2037271_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP011329.1_2039680_2039854_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP011329.1_2039889_2040042_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP011329.1_2040090_2042412_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP011329.1_2042455_2043340_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP011329.1_2043364_2045005_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP011329.1_2045174_2046386_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP011329.1_2046452_2047124_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP011329.1_2047153_2048356_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP011329.1_2048376_2049156_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP011329.1_2049313_2050051_+	COG2188, PhnF, Transcriptional regulators [Transcription]
