The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	351661	420413	4491639	tRNA,plate,transposase	Escherichia_phage(38.46%)	60	NA	NA
WP_002213759.1|351661_352120_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002208491.1|352262_352772_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002208490.1|352820_354548_-	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	33.3	3.0e-18
WP_002208488.1|354596_354854_-	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
WP_002222180.1|355352_356321_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	51.8	4.8e-74
WP_002213487.1|356477_357212_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_002227089.1|357460_358447_+	cell division protein ZipA	NA	NA	NA	NA	NA
WP_002213368.1|358537_360550_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	42.2	1.7e-142
WP_002213369.1|360569_360785_+	DUF3820 family protein	NA	NA	NA	NA	NA
WP_002213372.1|360885_361233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213374.1|361364_361970_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_002213775.1|362683_363142_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002222185.1|363334_364750_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002211622.1|365863_367048_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
WP_002211621.1|367498_368728_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_002354622.1|368820_369135_-	DUF2502 domain-containing protein	NA	NA	NA	NA	NA
WP_002232425.1|369404_370394_-	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA	NA
WP_002211617.1|370529_371408_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211616.1|371510_371987_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_002211615.1|372167_373139_+	glucokinase	NA	NA	NA	NA	NA
WP_002211614.1|373216_374464_-	DUF1479 domain-containing protein	NA	NA	NA	NA	NA
WP_002211613.1|374729_375965_+	alanine transaminase	NA	NA	NA	NA	NA
WP_002211611.1|376228_376753_+	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	47.1	9.3e-24
WP_002211610.1|376847_377279_-	hypothetical protein	NA	Q7Y3V7	Yersinia_phage	48.2	2.4e-25
WP_002215847.1|377868_378540_+	lipoprotein	NA	NA	NA	NA	NA
WP_002215846.1|378566_378923_+	DUF4810 domain-containing protein	NA	NA	NA	NA	NA
WP_002211607.1|378919_379576_+	DUF799 domain-containing protein	NA	NA	NA	NA	NA
WP_002211606.1|379821_380391_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_002228419.1|380387_380984_-	molecular chaperone	NA	A0A077SLS7	Escherichia_phage	49.2	9.2e-44
WP_002211604.1|381341_382118_-	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	41.4	3.9e-42
WP_002211603.1|382119_382737_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	68.3	1.1e-87
WP_002228420.1|382748_385175_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	54.3	6.9e-255
WP_002211601.1|386005_386854_+	DUF4225 domain-containing protein	NA	NA	NA	NA	NA
WP_002354621.1|387083_387563_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002211599.1|388029_388554_+	DUF2127 domain-containing protein	NA	NA	NA	NA	NA
WP_002211598.1|388626_389676_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	3.9e-21
WP_002215840.1|389672_391259_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002211596.1|391314_392334_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002211594.1|392662_393757_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_002211590.1|395022_395625_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002215321.1|395982_396465_-	DcrB-related protein	NA	NA	NA	NA	NA
WP_002211588.1|396461_398144_-	OmpA family protein	NA	NA	NA	NA	NA
WP_002224806.1|398144_398846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211586.1|398842_400180_-	glycosyl transferase	NA	A0A292GJ55	Xanthomonas_phage	32.8	2.0e-70
WP_002215319.1|400219_401251_-	fimbrial protein	NA	NA	NA	NA	NA
WP_002211584.1|401257_402439_-	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_002211583.1|402537_403563_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002211582.1|403562_405443_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002215317.1|406225_408901_+	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	32.3	1.0e-81
WP_002211580.1|409101_409647_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002211579.1|409803_410565_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_002215157.1|410692_412243_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002209743.1|412264_413473_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211577.1|413497_414688_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002211576.1|414672_415281_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002211575.1|415385_415910_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002211574.1|415933_417436_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211573.1|417761_418247_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002211572.1|418520_419060_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211571.1|419063_420413_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 2
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	749842	767793	4491639	protease,coat,transposase	Escherichia_phage(50.0%)	15	NA	NA
WP_000255944.1|749842_750865_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002215943.1|751271_751661_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_002210859.1|751770_752010_-	YebV family protein	NA	NA	NA	NA	NA
WP_002210858.1|752217_753207_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_002210857.1|753412_755860_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002210856.1|756030_756783_-	molecular chaperone	NA	NA	NA	NA	NA
WP_002216611.1|756813_757371_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216613.1|757391_757922_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002210852.1|757927_758482_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216616.1|758959_761611_-	PqiB family protein	NA	NA	NA	NA	NA
WP_002367629.1|761579_762827_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_002210850.1|763058_763556_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002210849.1|763651_764365_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_002210848.1|764384_766457_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.8	4.0e-86
WP_002210847.1|766911_767793_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 3
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	1072442	1161109	4491639	integrase,tail,transposase,lysis	Escherichia_phage(12.24%)	86	1061640:1061683	1170125:1170168
1061640:1061683	attL	AGGAGTAAAGCGTCCGCGCCAAGGATGGCGCGGCTCGAGCCTAC	NA	NA	NA	NA
WP_002223594.1|1072442_1072865_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_001297096.1|1073948_1074728_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002210659.1|1075096_1075687_-	thymidine kinase	NA	A0A1Z1LYD5	Serratia_phage	55.8	1.5e-54
WP_002223593.1|1076436_1076844_+	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
WP_002210664.1|1077278_1078625_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	38.3	1.9e-81
WP_002210665.1|1078931_1079948_-	two-component system response regulator RssB	NA	NA	NA	NA	NA
WP_002210666.1|1081281_1081746_+	YchJ family protein	NA	NA	NA	NA	NA
WP_002210667.1|1081829_1082699_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	37.3	5.5e-13
WP_002211665.1|1084581_1085442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211667.1|1086251_1087058_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_002211668.1|1087155_1087542_+	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_002211669.1|1087554_1087845_-	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
WP_002211670.1|1087841_1089767_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.4	4.2e-37
WP_002211671.1|1089813_1090860_-	selenide, water dikinase SelD	NA	NA	NA	NA	NA
WP_002211673.1|1091084_1091636_-	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_002211674.1|1091798_1093649_+	signal peptide peptidase SppA	NA	NA	NA	NA	NA
WP_002211675.1|1093765_1094782_+	asparaginase	NA	NA	NA	NA	NA
WP_002211676.1|1094796_1095444_+	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	33.0	1.8e-21
WP_002217933.1|1095577_1095850_-	YeaC family protein	NA	NA	NA	NA	NA
WP_002211677.1|1095920_1096334_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002224141.1|1096681_1097677_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002211679.1|1097990_1098866_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA	NA
WP_002430110.1|1098938_1099688_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_002211681.1|1100131_1102066_+	protein kinase YeaG	NA	NA	NA	NA	NA
WP_002216501.1|1102215_1103490_+	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	37.1	1.5e-11
WP_002211683.1|1103597_1104716_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002211684.1|1104750_1105656_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211685.1|1105853_1106723_+	pirin family protein	NA	NA	NA	NA	NA
WP_002216508.1|1106987_1108190_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	29.1	7.6e-29
WP_002211686.1|1108205_1109510_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_002211687.1|1109975_1111511_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_002211688.1|1111728_1112448_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA	NA
WP_002227934.1|1114501_1115032_+	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
WP_002214494.1|1115448_1115805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211692.1|1116896_1117637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211693.1|1117653_1118853_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.6	2.4e-38
WP_002214492.1|1118856_1120029_+	MFS transporter	NA	NA	NA	NA	NA
WP_097608205.1|1121771_1122140_-|tail	phage tail protein	tail	B6SCW7	Bacteriophage	42.0	5.0e-08
WP_002211696.1|1122201_1123119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211697.1|1123135_1124134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211698.1|1124133_1127337_-	host specificity protein J	NA	F1C571	Cronobacter_phage	60.5	0.0e+00
WP_002359202.1|1127512_1127734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211700.1|1127908_1128529_-|tail	tail assembly protein	tail	K7PGY0	Enterobacteria_phage	57.0	3.2e-55
WP_002211701.1|1128584_1128800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002214482.1|1128942_1129494_-	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	58.0	9.5e-27
WP_002211704.1|1129592_1130600_-	hypothetical protein	NA	A0A2H4J0P1	uncultured_Caudovirales_phage	33.0	4.1e-36
WP_002211705.1|1130673_1130841_-	hypothetical protein	NA	G9L6D7	Escherichia_phage	61.8	5.2e-13
WP_002211706.1|1130964_1131396_+	Arc family DNA-binding protein	NA	G9L6D6	Escherichia_phage	58.4	2.5e-30
WP_002211707.1|1131474_1132107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211708.1|1132367_1133078_-	peptidase P60	NA	K7P6F5	Enterobacteria_phage	76.8	1.3e-108
WP_002211709.1|1133080_1133833_-|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	67.7	9.4e-102
WP_002211710.1|1134006_1134348_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	50.0	1.7e-21
WP_002211711.1|1134350_1137854_-|tail	phage tail tape measure protein	tail	K7PMB9	Enterobacterial_phage	33.2	5.2e-118
WP_071530527.1|1137854_1138115_-	hypothetical protein	NA	A0A0S2SY90	Pseudomonas_phage	48.6	4.1e-12
WP_002211712.1|1138162_1138474_-	hypothetical protein	NA	I6PDG2	Cronobacter_phage	58.3	1.4e-30
WP_002211713.1|1138486_1139407_-|tail	phage tail protein	tail	I6PBN6	Cronobacter_phage	49.1	4.4e-61
WP_002211714.1|1139472_1139880_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_002211715.1|1139876_1140461_-	hypothetical protein	NA	G8C7Q1	Escherichia_phage	52.1	3.6e-48
WP_002211716.1|1140462_1140813_-	hypothetical protein	NA	I6PD77	Cronobacter_phage	56.0	6.9e-31
WP_002211717.1|1140814_1141069_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	53.1	2.2e-18
WP_002211718.1|1141065_1141548_-	hypothetical protein	NA	G8C7P9	Escherichia_phage	46.1	6.4e-27
WP_002211719.1|1141595_1142801_-	hypothetical protein	NA	A0A1B0VMF8	Pseudomonas_phage	79.2	1.8e-142
WP_002211720.1|1142814_1143588_-	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	62.3	2.8e-69
WP_002211721.1|1143709_1144822_-	hypothetical protein	NA	I6PD76	Cronobacter_phage	58.2	6.0e-121
WP_002228446.1|1144822_1145464_-	DUF4055 domain-containing protein	NA	A0A1B0VMH0	Pseudomonas_phage	54.1	3.8e-59
WP_002228445.1|1145482_1146211_-	hypothetical protein	NA	A0A1B0VMH0	Pseudomonas_phage	51.4	4.6e-61
WP_002211722.1|1146210_1147185_-	hypothetical protein	NA	A0A1W6JNY3	Morganella_phage	81.1	2.3e-153
WP_002209743.1|1147189_1148398_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211723.1|1148445_1149030_-	hypothetical protein	NA	A0A0R6PHH0	Moraxella_phage	70.7	4.8e-69
WP_002211724.1|1149033_1149483_-	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	72.9	1.0e-47
WP_002211725.1|1149513_1150149_-	hypothetical protein	NA	I6S676	Salmonella_phage	71.4	7.2e-87
WP_002211727.1|1150605_1151319_-	hypothetical protein	NA	Q5MBW0	Stx1-converting_phage	60.2	7.6e-69
WP_002211729.1|1151864_1152323_-|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	45.3	4.9e-21
WP_002211730.1|1152307_1152820_-	lysozyme	NA	I6PBN2	Cronobacter_phage	61.6	9.7e-50
WP_002430108.1|1152850_1153048_-	hypothetical protein	NA	B6SD15	Bacteriophage	64.4	4.9e-18
WP_002215644.1|1153293_1153569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211731.1|1153565_1153775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211732.1|1154198_1154762_-	hypothetical protein	NA	B6SD63	Bacteriophage	58.0	9.4e-30
WP_002215638.1|1154810_1155029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002215636.1|1155032_1155422_-	antitermination protein	NA	A0A1W6JNX1	Morganella_phage	68.8	1.4e-45
WP_002211735.1|1155422_1156028_-	recombination protein NinG	NA	A0A1P8DTE0	Proteus_phage	56.9	2.8e-56
WP_002211736.1|1156101_1156548_-	recombination protein NinB	NA	A0A2H4J8D9	uncultured_Caudovirales_phage	62.5	3.9e-47
WP_071525537.1|1156523_1157273_+	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	48.5	1.5e-54
WP_002215632.1|1157572_1157833_+	excisionase family protein	NA	Q859D3	Escherichia_coli_phage	42.9	1.7e-10
WP_001297096.1|1158000_1158780_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002211738.1|1159870_1161109_+|integrase	site-specific integrase	integrase	Q20GI2	Phage_258-320	53.3	2.3e-121
1170125:1170168	attR	AGGAGTAAAGCGTCCGCGCCAAGGATGGCGCGGCTCGAGCCTAC	NA	NA	NA	NA
>prophage 4
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	1522070	1566588	4491639	plate,tRNA,lysis,transposase	Indivirus(14.29%)	36	NA	NA
WP_002211870.1|1522070_1524098_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.1	8.0e-55
WP_002213775.1|1524261_1524720_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002228565.1|1524937_1525600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211975.1|1526297_1527374_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002211974.1|1527391_1528645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211973.1|1528977_1530159_+	MFS transporter	NA	NA	NA	NA	NA
WP_002211971.1|1530400_1530808_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_002211970.1|1530804_1531500_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_002211969.1|1531825_1532710_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_002211968.1|1533065_1534763_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002211966.1|1535043_1535781_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_002211965.1|1536225_1537236_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_002211964.1|1537256_1538777_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.9	2.6e-10
WP_002211963.1|1539006_1539999_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_002211961.1|1540746_1541913_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_002211960.1|1541967_1542630_-	GTP cyclohydrolase I FolE	NA	R9TJA5	Vibrio_phage	53.5	5.8e-55
WP_002211959.1|1542813_1543965_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
WP_002211958.1|1544100_1544970_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211957.1|1545243_1546383_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.9	5.2e-35
WP_002211956.1|1546403_1547246_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_002227980.1|1547502_1547715_+	peptide antibiotic darobactin C	NA	NA	NA	NA	NA
WP_002215886.1|1547798_1550159_+	darobactin export ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002211952.1|1550160_1551423_+	darobactin export ABC transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002211951.1|1551424_1552093_+	darobactin export ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	1.4e-35
WP_002211950.1|1552102_1553413_+	darobactin maturation radical SAM/SPASM protein DarE	NA	NA	NA	NA	NA
WP_002211949.1|1553947_1555222_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_002211948.1|1555223_1555994_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_002209743.1|1556129_1557338_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211947.1|1557381_1558035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002227996.1|1558262_1559858_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.5	6.1e-58
WP_002211945.1|1560540_1561164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211944.1|1561375_1562743_-	membrane protein	NA	NA	NA	NA	NA
WP_002211943.1|1562767_1563220_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002214552.1|1563219_1563801_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211941.1|1563775_1564861_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002211940.1|1564824_1566588_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 5
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	1591448	1658205	4491639	protease,tRNA,plate,transposase	Streptococcus_phage(20.0%)	55	NA	NA
WP_002211664.1|1591448_1592801_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002215896.1|1592812_1594357_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002213016.1|1595902_1596751_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002213017.1|1596849_1597098_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_002228570.1|1597135_1597576_-	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002213024.1|1597662_1598451_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213025.1|1598453_1599206_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_002213026.1|1599207_1599927_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213028.1|1599919_1601158_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_002213030.1|1601173_1601911_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213032.1|1601912_1603196_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_002213034.1|1603185_1603710_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_002213036.1|1603973_1604192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213038.1|1604922_1605669_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
WP_002213039.1|1605822_1608240_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002213046.1|1611883_1612213_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_002213049.1|1612264_1612543_-	acylphosphatase	NA	NA	NA	NA	NA
WP_002213052.1|1612636_1613827_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
WP_002213054.1|1613887_1614205_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_002213056.1|1614313_1614730_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_002213058.1|1615045_1615726_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_002213060.1|1615904_1616369_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002221095.1|1616429_1618484_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.8	1.5e-16
WP_002213062.1|1618677_1619124_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002213063.1|1619153_1621292_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_002213064.1|1621393_1622029_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_002213065.1|1622257_1622764_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_002213066.1|1623121_1624183_+	porin OmpA	NA	NA	NA	NA	NA
WP_002213775.1|1624372_1624831_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002226586.1|1624999_1625455_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_002224683.1|1625665_1627417_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_002220006.1|1627485_1628004_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_002211286.1|1628269_1628458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050881440.1|1629091_1630045_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.0	6.0e-178
WP_001297096.1|1630112_1630892_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002213775.1|1632052_1632511_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002228015.1|1632708_1632876_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_002211289.1|1633145_1633724_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_002211290.1|1633720_1635373_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_002211291.1|1635359_1636646_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_002211292.1|1636774_1638688_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.5e-47
WP_002211293.1|1638693_1640814_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_002363919.1|1640916_1642026_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_002211295.1|1642051_1642603_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_002211296.1|1642785_1643796_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_002220013.1|1644440_1647056_-	aminopeptidase N	NA	NA	NA	NA	NA
WP_002228013.1|1647771_1648977_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_002211301.1|1649475_1650876_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.2	6.5e-80
WP_002354007.1|1651176_1652256_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	56.5	3.2e-111
WP_002211303.1|1652512_1653703_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_002430096.1|1653856_1653973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211304.1|1654126_1654774_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	32.3	2.2e-22
WP_002211305.1|1654834_1655383_-	YcbK family protein	NA	A0A0K1LLY2	Rhodobacter_phage	34.7	7.8e-05
WP_002217987.1|1655606_1657463_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_002213775.1|1657746_1658205_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	1830765	1849130	4491639	coat,plate,tail,transposase	Vibrio_phage(25.0%)	19	NA	NA
WP_002213775.1|1830765_1831224_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002208835.1|1831424_1832429_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	47.7	3.1e-84
WP_002208836.1|1832606_1832834_+	YejL family protein	NA	NA	NA	NA	NA
WP_002208837.1|1832861_1834658_+	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_002230704.1|1834888_1835272_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	66.7	7.8e-36
WP_002208839.1|1835628_1836777_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_002208840.1|1836789_1837278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002208841.1|1837977_1838340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002208842.1|1838465_1839902_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002208843.1|1840192_1840933_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002208845.1|1841230_1842010_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
WP_002208846.1|1842106_1842454_-	DUF2313 domain-containing protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	41.3	6.4e-21
WP_002215458.1|1842450_1842711_-	DUF2313 domain-containing protein	NA	NA	NA	NA	NA
WP_002208847.1|1842707_1843844_-|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	4.5e-31
WP_002208848.1|1843847_1844303_-	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_002215460.1|1844299_1844896_-|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_002208850.1|1844911_1845967_-|tail	tail protein	tail	M1PVV2	Vibrio_phage	27.2	1.3e-37
WP_002208852.1|1845963_1847370_-	hypothetical protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
WP_002208853.1|1847636_1849130_-|coat	coat protein	coat	NA	NA	NA	NA
>prophage 7
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	1999965	2006137	4491639	transposase	Escherichia_phage(33.33%)	8	NA	NA
WP_002210709.1|1999965_2000166_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.7	1.6e-08
WP_002215949.1|2000165_2000708_+	ash family protein	NA	NA	NA	NA	NA
WP_002215950.1|2000700_2001660_+	toprim domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.0	1.6e-50
WP_002210707.1|2001656_2002745_+	AAA family ATPase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	60.4	1.4e-114
WP_002210705.1|2003093_2003408_-	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_002215951.1|2003413_2003731_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	48.1	2.0e-13
WP_000255944.1|2004335_2005358_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|2005357_2006137_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
>prophage 8
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	2611343	2678185	4491639	tRNA,plate,transposase	Escherichia_phage(37.5%)	58	NA	NA
WP_000255944.1|2611343_2612366_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|2612365_2613145_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002210424.1|2613406_2613793_-	8-oxo-dGTP diphosphatase MutT	NA	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	30.4	8.4e-06
WP_002210426.1|2614087_2616802_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_002210427.1|2616879_2617413_-	secA regulator SecM	NA	NA	NA	NA	NA
WP_002210428.1|2617441_2617966_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_002228285.1|2618132_2619053_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_002210430.1|2619152_2620304_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002210431.1|2620376_2621633_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002228100.1|2621659_2622487_-	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_002210432.1|2622488_2623409_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002216457.1|2623401_2624877_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002210434.1|2625014_2626085_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002210435.1|2626081_2627284_-	cell division protein FtsW	NA	NA	NA	NA	NA
WP_002210436.1|2627283_2628600_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002210437.1|2628602_2629685_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002210438.1|2629678_2631055_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_002210439.1|2631051_2632539_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_002210440.1|2632525_2634289_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_002210441.1|2634354_2634672_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002210442.1|2634668_2635631_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002210443.1|2635633_2636092_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_087768171.1|2636646_2636736_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002210446.1|2637193_2637634_+	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_002210447.1|2637764_2638775_-	catabolite repressor/activator	NA	NA	NA	NA	NA
WP_002213775.1|2639279_2639738_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002424260.1|2639936_2640461_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002228103.1|2640433_2642161_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	7.8e-59
WP_002216437.1|2642620_2644426_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	3.5e-38
WP_002216434.1|2644979_2645936_-	transcriptional regulator LeuO	NA	NA	NA	NA	NA
WP_002210452.1|2646613_2646829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213775.1|2647257_2647716_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_001297096.1|2648831_2649611_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002210504.1|2650127_2650949_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_002224759.1|2651421_2652597_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	34.3	6.9e-51
WP_002210502.1|2652612_2655846_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_002210501.1|2656073_2656688_-	LysE family translocator	NA	NA	NA	NA	NA
WP_002210499.1|2657011_2657812_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA	NA
WP_002210498.1|2657808_2658264_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002210497.1|2658413_2658896_+	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	42.6	4.7e-30
WP_042659218.1|2659151_2659565_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_071525509.1|2660006_2660321_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210493.1|2660447_2660912_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210492.1|2661001_2661871_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
WP_002210491.1|2661887_2662265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_002210490.1|2662278_2663097_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002210489.1|2663089_2664085_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_002210488.1|2664068_2665373_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA	NA
WP_002228111.1|2665440_2667783_-	LPS assembly protein LptD	NA	NA	NA	NA	NA
WP_002210486.1|2667967_2668801_+	co-chaperone DjlA	NA	NA	NA	NA	NA
WP_002210485.1|2669098_2669719_-|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
WP_002214747.1|2670941_2671685_-	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_002210482.1|2672014_2673028_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_002210481.1|2673038_2673599_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002210480.1|2673607_2675110_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002210479.1|2675272_2675791_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002210478.1|2675864_2676308_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002210477.1|2676340_2678185_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 9
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	2814677	2869666	4491639	tRNA,plate,transposase	Escherichia_phage(25.0%)	46	NA	NA
WP_071525507.1|2814677_2815016_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002209171.1|2815359_2816733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209170.1|2816704_2817427_-	histidine kinase	NA	NA	NA	NA	NA
WP_002209169.1|2817476_2818802_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_002209167.1|2819825_2821142_-	McrC family protein	NA	NA	NA	NA	NA
WP_002209166.1|2821138_2823202_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.2	5.3e-30
WP_000255944.1|2823335_2824358_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_042593134.1|2824357_2824570_+	hypothetical protein	NA	A0A2L1IVB6	Escherichia_phage	94.9	2.1e-22
WP_002228254.1|2824536_2825136_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	100.0	1.7e-106
WP_002209009.1|2825209_2825647_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002209010.1|2825653_2826538_-	virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002209011.1|2826634_2827225_-	glucose-1-phosphatase	NA	NA	NA	NA	NA
WP_002217380.1|2827546_2829370_-	ribosome-dependent GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	42.3	1.2e-20
WP_002213150.1|2829931_2831341_+	glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_002213151.1|2831593_2832643_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.2	4.2e-07
WP_002213152.1|2832650_2834063_+	nitrogen regulation protein NR(I)	NA	Q56AR1	Bacillus_thuringiensis_phage	25.6	3.1e-05
WP_002213155.1|2834116_2835490_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_002213158.1|2835672_2836239_-	Der GTPase-activating protein YihI	NA	NA	NA	NA	NA
WP_002213160.1|2836983_2837634_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002213775.1|2837885_2838344_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002213759.1|2838595_2839054_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002213164.1|2839462_2842261_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	32.8	2.7e-69
WP_002213168.1|2842752_2843376_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
WP_002213169.1|2843403_2844390_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
WP_002213170.1|2844480_2844750_-	YihD family protein	NA	NA	NA	NA	NA
WP_002213171.1|2844903_2845491_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_002217538.1|2845490_2846021_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_002220999.1|2846078_2847287_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002218887.1|2852993_2853179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210692.1|2853646_2855236_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.4	2.2e-68
WP_002210691.1|2855295_2856582_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002355296.1|2856729_2857383_-	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
WP_002210689.1|2857432_2857708_-	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	55.6	3.6e-19
WP_002210688.1|2857896_2858487_-	YjaG family protein	NA	NA	NA	NA	NA
WP_002210687.1|2858532_2859273_-	deoxyribonuclease V	NA	NA	NA	NA	NA
WP_002210686.1|2859302_2860370_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_002210685.1|2860488_2861274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210684.1|2861366_2862149_-	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_002210683.1|2862245_2862755_+	sigma D regulator	NA	NA	NA	NA	NA
WP_002210682.1|2863130_2865176_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_002210681.1|2865162_2865837_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_002210680.1|2865826_2866624_+	HesA/MoeB/ThiF family protein	NA	A0A1V0SAV8	Catovirus	27.8	1.6e-11
WP_002217275.1|2866620_2866836_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_002228257.1|2866837_2867653_+	thiazole synthase	NA	NA	NA	NA	NA
WP_002210678.1|2867645_2868776_+	2-iminoacetate synthase ThiH	NA	NA	NA	NA	NA
WP_002213775.1|2869207_2869666_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP006792	Yersinia pestis 2944 chromosome, complete genome	4491639	3201282	3263718	4491639	protease,tail,transposase	uncultured_Mediterranean_phage(18.18%)	55	NA	NA
WP_002216203.1|3201282_3201798_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.6	3.6e-28
WP_002210135.1|3201803_3202445_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_002230558.1|3202624_3202822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210133.1|3202818_3203211_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002210132.1|3203225_3203654_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002210131.1|3203967_3205095_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_002210130.1|3205318_3205723_+	DUF1043 family protein	NA	NA	NA	NA	NA
WP_002218066.1|3205993_3207367_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.2	7.4e-20
WP_002213775.1|3207483_3207942_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002210128.1|3208167_3209256_+	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	31.8	2.1e-09
WP_002210127.1|3209436_3210699_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002210126.1|3210852_3211107_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA	NA
WP_002210125.1|3211253_3211556_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
WP_002210124.1|3211591_3212215_-	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
WP_002210123.1|3212227_3212785_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_002210122.1|3212789_3213572_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_002210121.1|3213789_3214608_-	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.7	2.2e-19
WP_002210120.1|3214872_3215847_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_002210119.1|3215957_3216944_+	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.8	6.0e-40
WP_002228203.1|3217192_3217756_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	83.0	9.6e-59
WP_002218352.1|3217752_3218316_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_002210117.1|3218299_3218845_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
WP_002210116.1|3218851_3219577_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
WP_002210115.1|3219638_3221072_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_002213952.1|3221500_3221983_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_002210113.1|3222288_3223143_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.0	3.2e-05
WP_002210112.1|3223139_3223412_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
WP_002210111.1|3223749_3224685_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	38.5	1.5e-48
WP_002210110.1|3224696_3225161_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_002210109.1|3225298_3225685_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_002210107.1|3225983_3226460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210106.1|3226693_3227647_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA	NA
WP_002215779.1|3228057_3229473_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002210104.1|3229567_3231235_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_002210103.1|3231587_3231998_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_002210102.1|3232229_3232616_-	cytochrome b562	NA	NA	NA	NA	NA
WP_011055205.1|3232823_3233468_-	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	49.0	3.4e-52
WP_002210100.1|3233716_3235057_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_002210099.1|3235237_3235786_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_002210098.1|3235897_3236179_-	ribonuclease inhibitor	NA	NA	NA	NA	NA
WP_002214288.1|3236183_3236657_-	ribonuclease Ba	NA	NA	NA	NA	NA
WP_002210095.1|3238586_3240542_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
WP_002210094.1|3240543_3241479_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
WP_002210093.1|3241486_3241690_-	AaeX family protein	NA	NA	NA	NA	NA
WP_002210092.1|3241992_3242904_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
WP_002214297.1|3243164_3244031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210090.1|3244266_3246768_+	toxin	NA	NA	NA	NA	NA
WP_002220204.1|3246808_3250402_+|tail	phage tail tape measure protein	tail	NA	NA	NA	NA
WP_002210089.1|3250458_3254949_+	toxin	NA	NA	NA	NA	NA
WP_002214300.1|3255082_3255385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210087.1|3255397_3255799_+	M15 family metallopeptidase	NA	A0A249XWK9	Proteus_phage	61.0	3.6e-36
WP_032486133.1|3255795_3256155_+	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_002210084.1|3256355_3259187_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_002210083.1|3259211_3262070_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_002210082.1|3262272_3263718_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
>prophage 1
NZ_CP006791	Yersinia pestis 2944 plasmid pCD, complete sequence	70508	9934	35312	70508	transposase	Enterobacteria_phage(50.0%)	21	NA	NA
WP_002220893.1|9934_11107_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	95.4	1.6e-220
WP_002213267.1|11881_12307_+	type III secretion system chaperone SycH	NA	NA	NA	NA	NA
WP_086016640.1|12454_13554_-|transposase	IS3-like element ISYpe1 family transposase	transposase	S5WIU1	Leptospira_phage	38.5	1.4e-45
WP_002229829.1|13653_13983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002224338.1|14121_14586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213258.1|14604_15156_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
WP_002213256.1|15319_17635_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
WP_042469136.1|20246_20516_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213246.1|20584_21043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213244.1|21214_21532_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213294.1|21555_21963_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002233137.1|22379_22628_+	phospholipase	NA	A0A1B2LRT6	Wolbachia_phage	47.1	9.2e-06
WP_002229817.1|22765_23020_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_002233140.1|23261_23336_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_002213292.1|23316_24195_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_002213291.1|25367_25607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002233145.1|26352_26781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011114033.1|26798_28997_+	T3SS effector protein kinase YopO/YpkA	NA	NA	NA	NA	NA
WP_002224250.1|29392_30259_+	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA	NA
WP_002213278.1|31941_33348_+	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA	NA
WP_000255944.1|34289_35312_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 1
NZ_CP006790	Yersinia pestis 2944 plasmid pMT, complete sequence	100984	4737	59863	100984	transposase,terminase,tail	Salmonella_phage(86.67%)	51	NA	NA
WP_002213300.1|4737_5823_+	exonuclease	NA	J9Q7S9	Salmonella_phage	98.6	7.7e-206
WP_038918515.1|7609_7969_+	hypothetical protein	NA	J9Q741	Salmonella_phage	100.0	5.2e-58
WP_002213303.1|7958_8705_+	hypothetical protein	NA	J9Q6J5	Salmonella_phage	96.4	4.1e-134
WP_002214145.1|8717_9287_+	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	100.0	5.8e-104
WP_002213759.1|9495_9954_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	5.0e-13
WP_002211802.1|10153_10435_+	hypothetical protein	NA	J9Q753	Salmonella_phage	93.5	6.1e-46
WP_002211801.1|10640_11123_+	hypothetical protein	NA	J9Q805	Salmonella_phage	94.4	5.1e-85
WP_002214137.1|11761_11989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211799.1|12073_12724_-	hypothetical protein	NA	J9Q754	Salmonella_phage	99.5	4.1e-114
WP_002214134.1|13047_13575_-	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	98.0	6.4e-81
WP_002211796.1|13579_14002_-	hypothetical protein	NA	J9Q806	Salmonella_phage	85.0	4.1e-62
WP_002214131.1|14061_14340_-	hypothetical protein	NA	J9Q7T9	Salmonella_phage	97.8	4.4e-41
WP_002211794.1|14342_15902_-	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.0	1.1e-293
WP_002228791.1|15966_16665_+	ParB N-terminal domain-containing protein	NA	J9Q756	Salmonella_phage	98.7	9.6e-125
WP_002211792.1|16664_17333_+	ParB N-terminal domain-containing protein	NA	J9Q6L1	Salmonella_phage	98.2	9.5e-114
WP_002211791.1|17329_17968_+	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	98.1	4.7e-110
WP_002211790.1|17960_18215_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	97.6	2.0e-40
WP_002211789.1|18220_19111_+	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.7	6.2e-169
WP_000176291.1|19120_19387_+	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
WP_002211788.1|19582_20224_+	hypothetical protein	NA	J9Q6D4	Salmonella_phage	98.1	1.2e-108
WP_002211787.1|20226_21483_+|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	100.0	1.8e-251
WP_002211786.1|21516_23091_+	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.2	2.4e-301
WP_002211784.1|24040_24916_+	hypothetical protein	NA	J9Q710	Salmonella_phage	99.7	8.5e-163
WP_002211783.1|24990_25653_+	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	97.2	8.5e-107
WP_002211782.1|25696_26131_+	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	99.3	3.1e-73
WP_002211781.1|26130_26964_+	hypothetical protein	NA	J9Q7R2	Salmonella_phage	99.6	2.9e-152
WP_001027662.1|27061_27406_+	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
WP_002211780.1|27396_27870_+	hypothetical protein	NA	J9Q711	Salmonella_phage	99.4	8.9e-82
WP_002211779.1|27871_28255_+	hypothetical protein	NA	J9Q6D8	Salmonella_phage	98.4	1.1e-66
WP_002211778.1|28329_29076_+	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	98.8	5.2e-129
WP_000163862.1|29135_29453_+	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
WP_000952684.1|29578_29803_+	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	4.2e-34
WP_002211776.1|29810_34388_+	tape measure protein	NA	J9Q712	Salmonella_phage	90.5	0.0e+00
WP_000440566.1|34429_34765_+|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
WP_002211775.1|34854_35553_+|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	7.1e-136
WP_002211774.1|35545_36343_+|tail	tail protein	tail	J9Q7R4	Salmonella_phage	96.2	1.4e-156
WP_002211773.1|36330_36918_+|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	92.8	5.1e-103
WP_002214118.1|36939_41571_+	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	88.6	0.0e+00
WP_002211771.1|41627_42206_+	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	38.8	3.4e-27
WP_002211770.1|42286_45175_+|tail	phage tail protein	tail	J9Q6E3	Salmonella_phage	33.1	4.5e-11
WP_002211769.1|45476_46085_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
WP_001297096.1|46218_46998_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002224267.1|48419_48677_-	hypothetical protein	NA	J9Q7R9	Salmonella_phage	94.1	1.3e-34
WP_002224265.1|48977_49772_-	hypothetical protein	NA	J9Q7Z0	Salmonella_phage	96.6	3.7e-141
WP_002224263.1|50024_50747_+	DUF4145 domain-containing protein	NA	NA	NA	NA	NA
WP_002209743.1|50780_51989_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211760.1|52457_53480_+|transposase	IS110-like element IS1618 family transposase	transposase	NA	NA	NA	NA
WP_002211758.1|55555_57319_-	phospholipase D	NA	NA	NA	NA	NA
WP_002211757.1|57396_57885_-	phospholipase D family protein	NA	NA	NA	NA	NA
WP_002211756.1|58623_58899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215065.1|58921_59863_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.8	1.0e-68
>prophage 2
NZ_CP006790	Yersinia pestis 2944 plasmid pMT, complete sequence	100984	84840	100902	100984		Salmonella_phage(100.0%)	19	NA	NA
WP_002211766.1|84840_87207_+	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	94.4	0.0e+00
WP_002211767.1|87303_88539_+	AAA domain-containing protein	NA	J9Q733	Salmonella_phage	99.3	3.0e-238
WP_002221186.1|88719_92244_+	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	99.2	0.0e+00
WP_002425587.1|92258_92684_+	hypothetical protein	NA	J9Q7S4	Salmonella_phage	100.0	7.5e-72
WP_002213141.1|92713_93277_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	64.6	2.2e-63
WP_002215095.1|93349_93601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011114024.1|93821_94253_+	hypothetical protein	NA	J9Q6I8	Salmonella_phage	97.9	2.2e-71
WP_002213132.1|94372_95401_+	hypothetical protein	NA	J9Q7Z3	Salmonella_phage	98.5	1.3e-165
WP_002225551.1|95461_96406_+	exonuclease	NA	J9Q7S6	Salmonella_phage	99.0	1.3e-180
WP_000920226.1|96405_96672_+	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
WP_161597819.1|96719_97751_+	recombinase	NA	J9Q736	Salmonella_phage	99.1	6.9e-196
WP_002213439.1|97841_98042_+	hypothetical protein	NA	J9Q6J0	Salmonella_phage	97.0	1.1e-25
WP_002222866.1|98045_98876_+	hypothetical protein	NA	J9Q7Z4	Salmonella_phage	98.6	9.3e-127
WP_002222868.1|99029_99401_+	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	87.8	4.0e-61
WP_002222869.1|99384_99795_+	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.8	4.1e-75
WP_002228797.1|99862_100138_+	hypothetical protein	NA	J9Q738	Salmonella_phage	95.6	1.7e-45
WP_002228796.1|100178_100358_+	hypothetical protein	NA	J9Q6J1	Salmonella_phage	86.4	5.8e-18
WP_002227818.1|100354_100690_+	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	91.0	5.2e-52
WP_002222711.1|100689_100902_+	hypothetical protein	NA	J9Q7S8	Salmonella_phage	95.7	6.8e-34
