assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001188755.1_ASM118875v1	NZ_CP006748	Yersinia pestis 8787 chromosome, complete genome	1	519416-519865	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	519444-519475	NZ_CP006748.1_1069953-1069922	I-F:I-F:I-F	6,7,7	7	TypeI-F	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	NA|372aa|up_2|NZ_CP006748.1_514798_515914_+,NA|425aa|up_1|NZ_CP006748.1_515952_517227_+,NA|70aa|down_9|NZ_CP006748.1_531917_532127_+	NA|463aa|up_9|NZ_CP006748.1_506696_508085_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NZ_CP006748.1_508101_509142_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NZ_CP006748.1_509413_510700_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NZ_CP006748.1_510808_511684_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NZ_CP006748.1_511684_512509_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP006748.1_512655_513711_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NZ_CP006748.1_513737_514676_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NZ_CP006748.1_514798_515914_+	NA	NA|425aa|up_1|NZ_CP006748.1_515952_517227_+	NA	NA|415aa|up_0|NZ_CP006748.1_517833_519078_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NZ_CP006748.1_520224_521205_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NZ_CP006748.1_521201_524489_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NZ_CP006748.1_524897_526244_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_3|NZ_CP006748.1_526240_527191_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NZ_CP006748.1_527208_528213_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP006748.1_528223_528778_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NZ_CP006748.1_528855_529875_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NZ_CP006748.1_529885_530389_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NZ_CP006748.1_530435_531794_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NZ_CP006748.1_531917_532127_+	NA
GCF_001188755.1_ASM118875v1	NZ_CP006748	Yersinia pestis 8787 chromosome, complete genome	2	1439419-1439747	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	1439627-1439659|1439688-1439719	NZ_CP006748.1_1062623-1062655|NZ_CP006748.1_1062214-1062245	I-F:I-F:I-F	5,5,4	5	Orphan	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	NA,NA|16aa|down_7|NZ_CP006748.1_1448070_1448118_+	NA|382aa|up_9|NZ_CP006748.1_1423539_1424685_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|426aa|up_8|NZ_CP006748.1_1424981_1426259_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_7|NZ_CP006748.1_1426290_1427133_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_6|NZ_CP006748.1_1427180_1427921_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_5|NZ_CP006748.1_1428348_1428771_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_4|NZ_CP006748.1_1428779_1430084_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_3|NZ_CP006748.1_1431108_1434261_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|106aa|up_2|NZ_CP006748.1_1435800_1436118_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NZ_CP006748.1_1436551_1437661_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NZ_CP006748.1_1437953_1439384_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NZ_CP006748.1_1440241_1441633_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NZ_CP006748.1_1442091_1443183_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NZ_CP006748.1_1443468_1444362_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|241aa|down_3|NZ_CP006748.1_1444319_1445042_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NZ_CP006748.1_1445038_1446034_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_5|NZ_CP006748.1_1446422_1446713_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_6|NZ_CP006748.1_1446867_1447695_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|NZ_CP006748.1_1448070_1448118_+	NA	NA|300aa|down_8|NZ_CP006748.1_1448400_1449300_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|NZ_CP006748.1_1449303_1450635_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
GCF_001188755.1_ASM118875v1	NZ_CP006748	Yersinia pestis 8787 chromosome, complete genome	3	1740065-1740186	3	CRISPRCasFinder	no		cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	NA,NA|73aa|down_0|NZ_CP006748.1_1740542_1740761_+	NA|685aa|up_9|NZ_CP006748.1_1726248_1728303_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NZ_CP006748.1_1728363_1728828_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NZ_CP006748.1_1729006_1729687_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NZ_CP006748.1_1730002_1730419_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NZ_CP006748.1_1730527_1730845_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NZ_CP006748.1_1730905_1732096_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NZ_CP006748.1_1732189_1732468_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NZ_CP006748.1_1732519_1732849_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NZ_CP006748.1_1736494_1738912_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NZ_CP006748.1_1739065_1739812_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NZ_CP006748.1_1740542_1740761_+	NA	NA|175aa|down_1|NZ_CP006748.1_1741024_1741549_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NZ_CP006748.1_1741538_1742822_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NZ_CP006748.1_1742823_1743561_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NZ_CP006748.1_1743576_1744815_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NZ_CP006748.1_1744807_1745527_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NZ_CP006748.1_1745528_1746281_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NZ_CP006748.1_1746283_1747072_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NZ_CP006748.1_1747158_1747599_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NZ_CP006748.1_1747636_1747885_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_001188755.1_ASM118875v1	NZ_CP006748	Yersinia pestis 8787 chromosome, complete genome	4	3773804-3773916	4	CRISPRCasFinder	no		cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	NA,NA	NA|278aa|up_9|NZ_CP006748.1_3762397_3763231_+	PRK11613, folP, dihydropteroate synthase; Provisional	NA|447aa|up_8|NZ_CP006748.1_3763240_3764581_+	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|112aa|up_7|NZ_CP006748.1_3764803_3765139_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|151aa|up_6|NZ_CP006748.1_3765670_3766123_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|496aa|up_5|NZ_CP006748.1_3766144_3767632_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_4|NZ_CP006748.1_3767656_3770335_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|137aa|up_3|NZ_CP006748.1_3770400_3770811_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|325aa|up_2|NZ_CP006748.1_3770810_3771785_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_1|NZ_CP006748.1_3771907_3772177_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|452aa|up_0|NZ_CP006748.1_3772239_3773594_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|879aa|down_0|NZ_CP006748.1_3774335_3776972_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NZ_CP006748.1_3777345_3778509_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NZ_CP006748.1_3778759_3779764_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|NZ_CP006748.1_3779932_3780706_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NZ_CP006748.1_3780872_3782246_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NZ_CP006748.1_3782844_3785337_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NZ_CP006748.1_3785558_3786176_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NZ_CP006748.1_3786341_3788150_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NZ_CP006748.1_3788225_3789554_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NZ_CP006748.1_3789618_3790422_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_001188755.1_ASM118875v1	NZ_CP006748	Yersinia pestis 8787 chromosome, complete genome	5	4074672-4075061	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no		cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	3	3	4074700-4074731|4074760-4074791|4075002-4075033	NZ_CP006748.1_1061620-1061589|NZ_CP006748.1_1060722-1060753|NZ_CP006748.1_1061211-1061180	I-F:I-F:I-F	5,6,6	6	Orphan	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	NA|80aa|up_9|NZ_CP006748.1_4060802_4061042_+,NA|84aa|up_8|NZ_CP006748.1_4061080_4061332_+,NA|194aa|up_4|NZ_CP006748.1_4063246_4063828_-,NA|101aa|down_8|NZ_CP006748.1_4089981_4090284_-	NA|80aa|up_9|NZ_CP006748.1_4060802_4061042_+	NA	NA|84aa|up_8|NZ_CP006748.1_4061080_4061332_+	NA	NA|191aa|up_7|NZ_CP006748.1_4061355_4061928_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|134aa|up_6|NZ_CP006748.1_4061939_4062341_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|up_5|NZ_CP006748.1_4062577_4062979_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|194aa|up_4|NZ_CP006748.1_4063246_4063828_-	NA	NA|82aa|up_3|NZ_CP006748.1_4064500_4064746_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_2|NZ_CP006748.1_4064958_4067271_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NZ_CP006748.1_4067378_4073357_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP006748.1_4073763_4074312_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP006748.1_4075064_4075919_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|310aa|down_1|NZ_CP006748.1_4081156_4082086_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_2|NZ_CP006748.1_4082134_4083682_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP006748.1_4083693_4084722_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_4|NZ_CP006748.1_4084745_4085879_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_5|NZ_CP006748.1_4085910_4087881_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|307aa|down_6|NZ_CP006748.1_4088033_4088954_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_7|NZ_CP006748.1_4088963_4089779_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|101aa|down_8|NZ_CP006748.1_4089981_4090284_-	NA	NA|597aa|down_9|NZ_CP006748.1_4090348_4092139_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
