assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001188695.1_ASM118869v1	NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	1	10886-11275	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	3	3	10914-10945|10974-11005|11216-11247	NZ_CP006783.1_1466160-1466129|NZ_CP006783.1_1465262-1465293|NZ_CP006783.1_1465751-1465720	I-F:I-F:I-F	5,6,6	6	Orphan	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	NA,NA|101aa|down_8|NZ_CP006783.1_26195_26498_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|82aa|up_3|NZ_CP006783.1_714_960_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_2|NZ_CP006783.1_1172_3485_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NZ_CP006783.1_3592_9571_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP006783.1_9977_10526_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP006783.1_11278_12133_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|310aa|down_1|NZ_CP006783.1_17370_18300_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_2|NZ_CP006783.1_18348_19896_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP006783.1_19907_20936_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_4|NZ_CP006783.1_20959_22093_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_5|NZ_CP006783.1_22124_24095_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|307aa|down_6|NZ_CP006783.1_24247_25168_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_7|NZ_CP006783.1_25177_25993_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|101aa|down_8|NZ_CP006783.1_26195_26498_-	NA	NA|597aa|down_9|NZ_CP006783.1_26562_28353_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
GCF_001188695.1_ASM118869v1	NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	2	921927-922376	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	921955-921986	NZ_CP006783.1_1474493-1474462	I-F:I-F:I-F	6,7,7	7	TypeI-F	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	NA|372aa|up_2|NZ_CP006783.1_917309_918425_+,NA|425aa|up_1|NZ_CP006783.1_918463_919738_+,NA|70aa|down_9|NZ_CP006783.1_934428_934638_+	NA|463aa|up_9|NZ_CP006783.1_909207_910596_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NZ_CP006783.1_910612_911653_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NZ_CP006783.1_911924_913211_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NZ_CP006783.1_913319_914195_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NZ_CP006783.1_914195_915020_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP006783.1_915166_916222_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NZ_CP006783.1_916248_917187_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NZ_CP006783.1_917309_918425_+	NA	NA|425aa|up_1|NZ_CP006783.1_918463_919738_+	NA	NA|415aa|up_0|NZ_CP006783.1_920344_921589_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NZ_CP006783.1_922735_923716_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NZ_CP006783.1_923712_927000_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NZ_CP006783.1_927408_928755_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_3|NZ_CP006783.1_928751_929702_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NZ_CP006783.1_929719_930724_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP006783.1_930734_931289_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NZ_CP006783.1_931366_932386_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NZ_CP006783.1_932396_932900_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NZ_CP006783.1_932946_934305_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NZ_CP006783.1_934428_934638_+	NA
GCF_001188695.1_ASM118869v1	NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	3	1902841-1903169	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	1903049-1903081|1903110-1903141	NZ_CP006783.1_1467163-1467195|NZ_CP006783.1_1466754-1466785	I-F:I-F:I-F	5,5,4	5	Orphan	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	NA,NA|16aa|down_7|NZ_CP006783.1_1911492_1911540_+	NA|426aa|up_9|NZ_CP006783.1_1888401_1889679_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NZ_CP006783.1_1889710_1890553_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NZ_CP006783.1_1890600_1891341_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NZ_CP006783.1_1891768_1892191_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NZ_CP006783.1_1892199_1893504_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NZ_CP006783.1_1894528_1897681_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NZ_CP006783.1_1897643_1898852_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NZ_CP006783.1_1899222_1899540_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NZ_CP006783.1_1899973_1901083_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NZ_CP006783.1_1901375_1902806_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NZ_CP006783.1_1903663_1905055_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NZ_CP006783.1_1905513_1906605_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NZ_CP006783.1_1906890_1907784_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|241aa|down_3|NZ_CP006783.1_1907741_1908464_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NZ_CP006783.1_1908460_1909456_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_5|NZ_CP006783.1_1909844_1910135_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_6|NZ_CP006783.1_1910289_1911117_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|NZ_CP006783.1_1911492_1911540_+	NA	NA|300aa|down_8|NZ_CP006783.1_1911822_1912722_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|NZ_CP006783.1_1912725_1914057_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
GCF_001188695.1_ASM118869v1	NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	4	2028765-2028886	4	CRISPRCasFinder	no		DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	NA|73aa|up_0|NZ_CP006783.1_2028189_2028408_-,NA	NA|83aa|up_9|NZ_CP006783.1_2021065_2021314_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NZ_CP006783.1_2021351_2021792_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NZ_CP006783.1_2021878_2022667_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NZ_CP006783.1_2022669_2023422_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NZ_CP006783.1_2023423_2024143_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NZ_CP006783.1_2024135_2025374_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NZ_CP006783.1_2025389_2026127_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NZ_CP006783.1_2026128_2027412_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NZ_CP006783.1_2027401_2027926_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NZ_CP006783.1_2028189_2028408_-	NA	NA|249aa|down_0|NZ_CP006783.1_2029138_2029885_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NZ_CP006783.1_2030038_2032456_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NZ_CP006783.1_2036101_2036431_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NZ_CP006783.1_2036482_2036761_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NZ_CP006783.1_2036854_2038045_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NZ_CP006783.1_2038105_2038423_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NZ_CP006783.1_2038531_2038948_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NZ_CP006783.1_2039263_2039944_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NZ_CP006783.1_2040122_2040587_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NZ_CP006783.1_2040647_2042702_-	PRK11054, helD, DNA helicase IV; Provisional
GCF_001188695.1_ASM118869v1	NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	5	4235689-4235801	5	CRISPRCasFinder	no		DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,csa3	NA,NA	NA|278aa|up_9|NZ_CP006783.1_4224282_4225116_+	PRK11613, folP, dihydropteroate synthase; Provisional	NA|447aa|up_8|NZ_CP006783.1_4225125_4226466_+	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|112aa|up_7|NZ_CP006783.1_4226688_4227024_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|151aa|up_6|NZ_CP006783.1_4227555_4228008_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|496aa|up_5|NZ_CP006783.1_4228029_4229517_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_4|NZ_CP006783.1_4229541_4232220_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|137aa|up_3|NZ_CP006783.1_4232285_4232696_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|325aa|up_2|NZ_CP006783.1_4232695_4233670_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_1|NZ_CP006783.1_4233792_4234062_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|452aa|up_0|NZ_CP006783.1_4234124_4235479_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|879aa|down_0|NZ_CP006783.1_4236220_4238857_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NZ_CP006783.1_4239230_4240394_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NZ_CP006783.1_4240644_4241649_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|NZ_CP006783.1_4241817_4242591_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NZ_CP006783.1_4242757_4244131_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NZ_CP006783.1_4244729_4247222_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NZ_CP006783.1_4247443_4248061_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NZ_CP006783.1_4248226_4250035_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NZ_CP006783.1_4250110_4251439_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NZ_CP006783.1_4251503_4252307_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
