The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009242	Listeria monocytogenes strain LM850658 chromosome, complete genome	2918502	1787435	1795721	2918502		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_012581151.1|1787435_1788002_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.1	1.7e-26
WP_012581150.1|1787998_1789048_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	3.2e-63
WP_003722245.1|1789066_1790494_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_012581149.1|1790478_1792698_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.6e-160
WP_012581148.1|1792690_1793374_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1793377_1793623_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012581147.1|1793634_1794348_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.1e-42
WP_003729814.1|1794428_1795721_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 2
NZ_CP009242	Listeria monocytogenes strain LM850658 chromosome, complete genome	2918502	2471525	2479353	2918502		Streptococcus_phage(50.0%)	7	NA	NA
WP_050897657.1|2471525_2472497_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	6.8e-52
WP_012580771.1|2472504_2473473_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	42.9	8.8e-68
WP_003729205.1|2473474_2474350_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_012580770.1|2474457_2476188_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.5	1.1e-174
WP_012580769.1|2476215_2477277_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003729208.1|2477292_2478276_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.4	1.8e-52
WP_003739737.1|2478393_2479353_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	54.1	1.5e-88
>prophage 3
NZ_CP009242	Listeria monocytogenes strain LM850658 chromosome, complete genome	2918502	2563855	2652939	2918502	integrase,terminase,portal,protease,plate,capsid,tRNA,tail,holin	Listeria_phage(87.32%)	107	2616634:2616648	2649447:2649461
WP_012580731.1|2563855_2565526_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003723610.1|2565522_2565972_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_012580730.1|2566049_2566703_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_077904926.1|2566737_2566962_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_012580729.1|2566996_2568319_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.7	5.8e-30
WP_012580728.1|2568333_2569170_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA	NA
WP_003729274.1|2569488_2569689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003729275.1|2569711_2570035_-	YxeA family protein	NA	NA	NA	NA	NA
WP_012580727.1|2570188_2571850_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003726112.1|2571984_2572599_-	SdpI family protein	NA	NA	NA	NA	NA
WP_012580726.1|2572622_2573255_-	nicotinamidase	NA	NA	NA	NA	NA
WP_003726114.1|2573255_2573780_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_012580725.1|2573782_2574781_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003729280.1|2574877_2575150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003729281.1|2575198_2576110_-	cation transporter	NA	NA	NA	NA	NA
WP_012580724.1|2576277_2577105_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012580723.1|2577219_2578092_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012580722.1|2578104_2578395_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_012580721.1|2578442_2580527_-	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_012580719.1|2580934_2583256_-	InlB B-repeat-containing protein	NA	NA	NA	NA	NA
WP_050897659.1|2583607_2584279_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	1.6e-36
WP_012580718.1|2584278_2585367_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012580717.1|2585445_2586825_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	48.3	4.0e-58
WP_012580716.1|2586821_2587499_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	48.6	3.4e-58
WP_012580715.1|2587545_2588331_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_012580714.1|2588392_2588869_-	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
WP_012580713.1|2588868_2591856_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_012580712.1|2592353_2593196_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_012580711.1|2593245_2594727_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003728385.1|2594827_2595715_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012582427.1|2601911_2602940_-	P-loop NTPase	NA	NA	NA	NA	NA
WP_012582426.1|2603208_2604735_+	GW domain-containing glycosaminoglycan-binding protein	NA	A0A0K2CP65	Brevibacillus_phage	48.7	1.2e-26
WP_012582425.1|2604777_2605629_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	37.6	6.8e-48
WP_012582424.1|2605650_2606073_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012582423.1|2606194_2606557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582422.1|2606800_2607670_+	DUF4969 domain-containing protein	NA	NA	NA	NA	NA
WP_012582421.1|2608266_2608701_-	hypothetical protein	NA	A0A0B5CTT3	Listeria_phage	100.0	1.2e-80
WP_012582420.1|2608719_2609664_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8W5Y8	Listeria_phage	91.7	9.5e-168
WP_012582419.1|2609656_2609917_-|holin	phage holin	holin	Q8W5Y9	Listeria_phage	100.0	1.6e-40
WP_012582418.1|2609937_2610342_-	hypothetical protein	NA	Q8W5Z0	Listeria_phage	90.3	2.8e-44
WP_003743972.1|2610320_2610764_-	hypothetical protein	NA	Q8W5Z1	Listeria_phage	100.0	8.0e-77
WP_012582417.1|2610800_2610959_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	78.8	2.5e-12
WP_050897660.1|2610963_2611242_-	hypothetical protein	NA	A8ATB3	Listeria_phage	55.7	2.9e-16
WP_050897661.1|2611238_2612324_-|plate	BppU family phage baseplate upper protein	plate	A0A0B5D119	Listeria_phage	87.9	9.4e-111
WP_045553706.1|2612320_2613346_-	hypothetical protein	NA	A0A0B5D157	Listeria_phage	92.1	3.0e-175
WP_012582413.1|2613346_2614369_-|tail	phage tail protein	tail	A0A0B5D0G3	Listeria_phage	98.5	5.4e-193
WP_012582412.1|2614383_2615211_-|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	96.7	1.1e-154
WP_050897662.1|2615207_2620574_-	tape measure protein	NA	A8ASK6	Listeria_phage	85.3	0.0e+00
2616634:2616648	attL	AAAGCATTTCCTTTT	NA	NA	NA	NA
WP_050897663.1|2620584_2621187_-	bacteriophage Gp15 family protein	NA	A8ASK5	Listeria_phage	98.0	2.0e-107
WP_014601077.1|2621192_2621615_-|tail	phage tail assembly chaperone	tail	A8ASK4	Listeria_phage	70.0	2.6e-48
WP_041918347.1|2621666_2621906_-	Ig-like domain-containing protein	NA	A0A059T5E4	Listeria_phage	96.2	6.1e-31
WP_003735047.1|2621928_2622366_-	hypothetical protein	NA	A0A059T6D6	Listeria_phage	100.0	2.5e-78
WP_050897664.1|2622368_2622776_-	hypothetical protein	NA	A8ASK1	Listeria_phage	97.0	2.9e-65
WP_050897665.1|2622775_2623114_-	hypothetical protein	NA	A0A059T7W4	Listeria_phage	97.3	5.4e-57
WP_050897666.1|2623113_2623476_-	hypothetical protein	NA	Q9T1B4	Listeria_phage	95.8	9.2e-63
WP_045553711.1|2623475_2623871_-	hypothetical protein	NA	A0A0B5D0F6	Listeria_phage	98.5	7.4e-66
WP_003731734.1|2623872_2624031_-	hypothetical protein	NA	Q9T1B6	Listeria_phage	94.2	6.7e-18
WP_045553712.1|2624030_2624930_-|capsid	phage major capsid protein	capsid	Q9T1B7	Listeria_phage	99.0	2.5e-165
WP_021496275.1|2624953_2625523_-	phage scaffolding protein	NA	Q9T1B8	Listeria_phage	98.4	1.6e-93
WP_050897667.1|2625601_2626741_-|capsid	phage minor capsid protein	capsid	A8ASJ4	Listeria_phage	95.3	1.6e-201
WP_012582402.1|2626741_2628511_-|portal	phage portal protein	portal	A0A059T657	Listeria_phage	95.5	1.8e-265
WP_050897668.1|2628523_2629855_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	99.1	4.2e-262
WP_009912949.1|2629823_2630366_-|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	99.4	1.4e-91
WP_050897669.1|2630407_2630593_-	hypothetical protein	NA	A8ASQ3	Listeria_phage	98.4	2.7e-26
WP_050897670.1|2630689_2631250_-	hypothetical protein	NA	A8ASQ2	Listeria_phage	98.9	1.6e-90
WP_050897671.1|2631613_2632048_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	97.9	4.8e-74
WP_003727776.1|2632066_2632231_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	92.6	2.5e-20
WP_050897672.1|2632359_2632743_-	DUF2481 family protein	NA	A0A0B5CYS3	Listeria_phage	97.6	2.0e-63
WP_050897673.1|2632746_2633151_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	90.3	2.5e-61
WP_031645649.1|2633095_2633278_-	hypothetical protein	NA	A8ASP6	Listeria_phage	82.5	1.5e-18
WP_050897674.1|2633296_2633779_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	85.6	6.1e-70
WP_012582392.1|2633775_2634177_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	82.0	3.9e-54
WP_012582391.1|2634188_2634416_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	97.3	3.9e-35
WP_012582390.1|2634408_2634609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582389.1|2634605_2634806_-	hypothetical protein	NA	A8ASP4	Listeria_phage	74.6	6.5e-18
WP_012582388.1|2634827_2635211_-	hypothetical protein	NA	A8ATZ3	Listeria_phage	90.6	1.5e-55
WP_012582387.1|2635207_2635669_-	hypothetical protein	NA	D9J0I6	Brochothrix_phage	33.1	8.2e-16
WP_012582386.1|2635665_2635839_-	hypothetical protein	NA	A0A059T7N2	Listeria_phage	93.0	4.7e-25
WP_012582385.1|2635839_2636229_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	54.6	3.8e-30
WP_012581477.1|2636245_2636539_-	hypothetical protein	NA	A8ATM4	Listeria_phage	78.4	8.9e-32
WP_010991288.1|2636535_2636724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010991289.1|2636716_2637115_-	hypothetical protein	NA	A0A0B5CYQ9	Listeria_phage	92.9	3.4e-66
WP_014589047.1|2637111_2638392_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1X9I6Y5	Streptococcus_phage	54.6	8.4e-119
WP_012582382.1|2638698_2638986_-	hypothetical protein	NA	A0A059T7V3	Listeria_phage	93.7	4.4e-44
WP_012582381.1|2638982_2639903_-	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	90.5	2.1e-140
WP_012582380.1|2639923_2640739_-	recombinase RecT	NA	A0A0B5CTU3	Listeria_phage	99.3	5.9e-150
WP_010991174.1|2640738_2641698_-	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	99.4	1.3e-177
WP_003731815.1|2641930_2642119_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	98.4	1.7e-28
WP_003734955.1|2642134_2642425_-	hypothetical protein	NA	A0A0B5CYM2	Listeria_phage	100.0	1.0e-48
WP_012582379.1|2642449_2642983_-	hypothetical protein	NA	A0A0B5CU01	Listeria_phage	93.2	1.2e-82
WP_012582378.1|2643107_2643896_-	phage antirepressor Ant	NA	Q9T178	Listeria_phage	93.1	1.4e-135
WP_012582377.1|2643907_2644183_-	hypothetical protein	NA	A8ASM5	Listeria_phage	83.0	2.7e-38
WP_012582376.1|2644211_2644493_-	hypothetical protein	NA	A0A0B5D168	Listeria_phage	97.8	1.2e-46
WP_003735007.1|2644504_2644699_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	100.0	1.3e-26
WP_003727743.1|2644922_2645189_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
WP_003731220.1|2645192_2645444_-	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	100.0	7.6e-40
WP_009911345.1|2645592_2645901_+	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	98.0	7.8e-47
WP_009911346.1|2645931_2646423_+	bacteriophage gp35-type protein	NA	A8ATX4	Listeria_phage	98.8	1.1e-90
WP_003727739.1|2646445_2646664_+	zinc-ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	100.0	5.4e-34
WP_003727738.1|2646679_2647402_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	100.0	1.3e-105
WP_010991182.1|2647422_2648130_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	74.5	6.3e-92
WP_012582371.1|2648195_2649389_+|integrase	site-specific integrase	integrase	A0A0B5CTZ4	Listeria_phage	100.0	2.2e-217
WP_003726075.1|2649474_2649867_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
2649447:2649461	attR	AAAAGGAAATGCTTT	NA	NA	NA	NA
WP_003727703.1|2649888_2650326_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_012582370.1|2650520_2651267_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_003728530.1|2651272_2652070_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003727701.1|2652072_2652939_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	1.5e-10
