assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	1	397633-397735	1	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	CCTAACGCTTGAATTAAGCCGAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|121aa|up_8|NZ_CP012145.1_390805_391168_-,NA|83aa|up_7|NZ_CP012145.1_391594_391843_-,NA|185aa|up_6|NZ_CP012145.1_391891_392446_-,NA|163aa|up_4|NZ_CP012145.1_393063_393552_-,NA|109aa|up_3|NZ_CP012145.1_393633_393960_-,NA|158aa|up_2|NZ_CP012145.1_394369_394843_-,NA|83aa|down_0|NZ_CP012145.1_398409_398658_-	NA|312aa|up_9|NZ_CP012145.1_389626_390562_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|121aa|up_8|NZ_CP012145.1_390805_391168_-	NA	NA|83aa|up_7|NZ_CP012145.1_391594_391843_-	NA	NA|185aa|up_6|NZ_CP012145.1_391891_392446_-	NA	NA|147aa|up_5|NZ_CP012145.1_392522_392963_-	pfam11008, DUF2846, Protein of unknown function (DUF2846)	NA|163aa|up_4|NZ_CP012145.1_393063_393552_-	NA	NA|109aa|up_3|NZ_CP012145.1_393633_393960_-	NA	NA|158aa|up_2|NZ_CP012145.1_394369_394843_-	NA	NA|74aa|up_1|NZ_CP012145.1_396096_396318_+	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|278aa|up_0|NZ_CP012145.1_396437_397271_-	pfam13271, DUF4062, Domain of unknown function (DUF4062)	NA|83aa|down_0|NZ_CP012145.1_398409_398658_-	NA	NA|328aa|down_1|NZ_CP012145.1_398886_399870_+	TIGR02249, Integrase/recombinase_E2_protein	NA|613aa|down_2|NZ_CP012145.1_400136_401975_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|89aa|down_3|NZ_CP012145.1_402386_402653_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|299aa|down_4|NZ_CP012145.1_403053_403950_-	pfam09935, DUF2167, Protein of unknown function (DUF2167)	NA|182aa|down_5|NZ_CP012145.1_404030_404576_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]	NA|437aa|down_6|NZ_CP012145.1_405464_406775_+	TIGR00895, transport_protein, benzoate transport	NA|414aa|down_7|NZ_CP012145.1_406923_408165_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|159aa|down_8|NZ_CP012145.1_408917_409394_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|157aa|down_9|NZ_CP012145.1_409456_409927_+	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	2	586562-587592	2	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	CTCACTGCCGGCTATGGCAGCAC	23	4	6	587305-587329|587305-587329|587449-587473|587497-587521|587497-587521|587545-587569	NZ_CP012145.1_587737-587761|NZ_CP012145.1_588025-588049|NZ_CP012145.1_587593-587617|NZ_CP012145.1_587641-587665|NZ_CP012145.1_588217-588241|NZ_CP012145.1_588121-588145	NA	21	21	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|233aa|up_9|NZ_CP012145.1_574693_575392_-,NA|148aa|up_4|NZ_CP012145.1_580819_581263_+,NA|165aa|down_3|NZ_CP012145.1_592927_593422_+,NA|307aa|down_5|NZ_CP012145.1_594767_595688_+,NA|122aa|down_6|NZ_CP012145.1_595684_596050_+	NA|233aa|up_9|NZ_CP012145.1_574693_575392_-	NA	NA|528aa|up_8|NZ_CP012145.1_575400_576984_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|205aa|up_7|NZ_CP012145.1_577059_577674_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|588aa|up_6|NZ_CP012145.1_577728_579492_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|445aa|up_5|NZ_CP012145.1_579488_580823_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|148aa|up_4|NZ_CP012145.1_580819_581263_+	NA	NA|503aa|up_3|NZ_CP012145.1_581259_582768_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|216aa|up_2|NZ_CP012145.1_582767_583415_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|211aa|up_1|NZ_CP012145.1_583411_584044_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|325aa|up_0|NZ_CP012145.1_584040_585015_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|91aa|down_0|NZ_CP012145.1_590438_590711_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|430aa|down_1|NZ_CP012145.1_590826_592116_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_CP012145.1_592401_592779_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|down_3|NZ_CP012145.1_592927_593422_+	NA	NA|307aa|down_4|NZ_CP012145.1_593423_594344_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|307aa|down_5|NZ_CP012145.1_594767_595688_+	NA	NA|122aa|down_6|NZ_CP012145.1_595684_596050_+	NA	NA|456aa|down_7|NZ_CP012145.1_596683_598051_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|129aa|down_8|NZ_CP012145.1_598093_598480_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|down_9|NZ_CP012145.1_598497_598980_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	3	589546-589759	1	CRT	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	GCNGGCGACCGCAGCAAGTTGA	22	0	0	NA	NA	NA	4	4	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|233aa|up_9|NZ_CP012145.1_574693_575392_-,NA|148aa|up_4|NZ_CP012145.1_580819_581263_+,NA|165aa|down_3|NZ_CP012145.1_592927_593422_+,NA|307aa|down_5|NZ_CP012145.1_594767_595688_+,NA|122aa|down_6|NZ_CP012145.1_595684_596050_+	NA|233aa|up_9|NZ_CP012145.1_574693_575392_-	NA	NA|528aa|up_8|NZ_CP012145.1_575400_576984_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|205aa|up_7|NZ_CP012145.1_577059_577674_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|588aa|up_6|NZ_CP012145.1_577728_579492_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|445aa|up_5|NZ_CP012145.1_579488_580823_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|148aa|up_4|NZ_CP012145.1_580819_581263_+	NA	NA|503aa|up_3|NZ_CP012145.1_581259_582768_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|216aa|up_2|NZ_CP012145.1_582767_583415_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|211aa|up_1|NZ_CP012145.1_583411_584044_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|325aa|up_0|NZ_CP012145.1_584040_585015_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|91aa|down_0|NZ_CP012145.1_590438_590711_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|430aa|down_1|NZ_CP012145.1_590826_592116_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_CP012145.1_592401_592779_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|down_3|NZ_CP012145.1_592927_593422_+	NA	NA|307aa|down_4|NZ_CP012145.1_593423_594344_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|307aa|down_5|NZ_CP012145.1_594767_595688_+	NA	NA|122aa|down_6|NZ_CP012145.1_595684_596050_+	NA	NA|456aa|down_7|NZ_CP012145.1_596683_598051_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|129aa|down_8|NZ_CP012145.1_598093_598480_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|down_9|NZ_CP012145.1_598497_598980_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	4	617875-618002	3	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	TGGCGCGCCATTTGCAGAAATGCGCGATCGTCTGCA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA,NA|618aa|down_0|NZ_CP012145.1_618141_619995_-,NA|83aa|down_4|NZ_CP012145.1_626602_626851_+	NA|129aa|up_9|NZ_CP012145.1_598093_598480_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|up_8|NZ_CP012145.1_598497_598980_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|149aa|up_7|NZ_CP012145.1_599059_599506_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|769aa|up_6|NZ_CP012145.1_600335_602642_-	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|111aa|up_5|NZ_CP012145.1_602647_602980_-	pfam03091, CutA1, CutA1 divalent ion tolerance protein	NA|597aa|up_4|NZ_CP012145.1_603581_605372_-	pfam04231, Endonuclease_1, Endonuclease I	NA|96aa|up_3|NZ_CP012145.1_605644_605932_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|547aa|up_2|NZ_CP012145.1_606077_607718_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|968aa|up_1|NZ_CP012145.1_607880_610784_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|439aa|up_0|NZ_CP012145.1_610780_612097_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|618aa|down_0|NZ_CP012145.1_618141_619995_-	NA	NA|962aa|down_1|NZ_CP012145.1_620427_623313_+	pfam07715, Plug, TonB-dependent Receptor Plug Domain	NA|453aa|down_2|NZ_CP012145.1_623384_624743_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|378aa|down_3|NZ_CP012145.1_624880_626013_+	pfam13683, rve_3, Integrase core domain	NA|83aa|down_4|NZ_CP012145.1_626602_626851_+	NA	NA|361aa|down_5|NZ_CP012145.1_626838_627921_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|505aa|down_6|NZ_CP012145.1_629117_630632_-	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase	NA|726aa|down_7|NZ_CP012145.1_630799_632977_+	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]	NA|819aa|down_8|NZ_CP012145.1_633350_635807_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|306aa|down_9|NZ_CP012145.1_636017_636935_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	5	2572791-2572899	4	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	TCGCGGGACACGTCGCAAGTACGTCCCTG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|111aa|up_8|NZ_CP012145.1_2566072_2566405_-,NA	NA|409aa|up_9|NZ_CP012145.1_2564768_2565995_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|111aa|up_8|NZ_CP012145.1_2566072_2566405_-	NA	NA|104aa|up_7|NZ_CP012145.1_2566419_2566731_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|215aa|up_6|NZ_CP012145.1_2566797_2567442_-	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|315aa|up_5|NZ_CP012145.1_2567677_2568622_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|134aa|up_4|NZ_CP012145.1_2569086_2569488_+	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|136aa|up_3|NZ_CP012145.1_2569491_2569899_+	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|222aa|up_2|NZ_CP012145.1_2569922_2570588_+	PRK12634, flgD, flagellar basal body rod modification protein; Reviewed	NA|408aa|up_1|NZ_CP012145.1_2570619_2571843_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|252aa|up_0|NZ_CP012145.1_2571986_2572742_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|down_0|NZ_CP012145.1_2573459_2574245_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|231aa|down_1|NZ_CP012145.1_2574283_2574976_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|373aa|down_2|NZ_CP012145.1_2574986_2576105_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|396aa|down_3|NZ_CP012145.1_2576106_2577294_+	PRK12711, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|625aa|down_4|NZ_CP012145.1_2577305_2579180_+	PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional	NA|402aa|down_5|NZ_CP012145.1_2579179_2580385_+	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|400aa|down_6|NZ_CP012145.1_2580702_2581902_+	PRK08869, PRK08869, polar flagellin E	NA|443aa|down_7|NZ_CP012145.1_2582122_2583451_+	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus	NA|138aa|down_8|NZ_CP012145.1_2583598_2584012_+	PRK05685, fliS, flagellar export chaperone FliS	NA|98aa|down_9|NZ_CP012145.1_2584020_2584314_+	cd17431, MFS_GLUT_Class1, Class 1 Glucose transporters (GLUTs) of the Major Facilitator Superfamily
GCF_001186415.1_ASM118641v1	NZ_CP012145	Xanthomonas campestris pv. campestris strain ICMP 21080 chromosome, complete genome	6	4807533-4807680	5	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|70aa|up_5|NZ_CP012145.1_4797416_4797626_-,NA|114aa|up_0|NZ_CP012145.1_4807054_4807396_+,NA	NA|395aa|up_9|NZ_CP012145.1_4789167_4790352_+	pfam03594, BenE, Benzoate membrane transport protein	NA|635aa|up_8|NZ_CP012145.1_4790663_4792568_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|198aa|up_7|NZ_CP012145.1_4792564_4793158_-	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria	NA|720aa|up_6|NZ_CP012145.1_4795069_4797229_-	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|70aa|up_5|NZ_CP012145.1_4797416_4797626_-	NA	NA|130aa|up_4|NZ_CP012145.1_4797868_4798258_-	PRK04233, PRK04233, hypothetical protein; Provisional	NA|272aa|up_3|NZ_CP012145.1_4799270_4800086_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|687aa|up_2|NZ_CP012145.1_4800129_4802190_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|1338aa|up_1|NZ_CP012145.1_4802631_4806645_-	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|up_0|NZ_CP012145.1_4807054_4807396_+	NA	NA|236aa|down_0|NZ_CP012145.1_4807765_4808473_-	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|490aa|down_1|NZ_CP012145.1_4808459_4809929_-	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|201aa|down_2|NZ_CP012145.1_4809948_4810551_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|148aa|down_3|NZ_CP012145.1_4810684_4811128_+	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|70aa|down_4|NZ_CP012145.1_4811210_4811420_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|308aa|down_5|NZ_CP012145.1_4811416_4812340_+	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|484aa|down_6|NZ_CP012145.1_4812336_4813788_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|767aa|down_7|NZ_CP012145.1_4813784_4816085_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|454aa|down_8|NZ_CP012145.1_4816438_4817800_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|182aa|down_9|NZ_CP012145.1_4817992_4818538_-	pfam08922, DUF1905, Domain of unknown function (DUF1905)
