The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1496	17325	2917985	integrase,capsid	Staphylococcus_phage(64.71%)	21	4033:4049	17989:18005
WP_000571218.1|1496_2522_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|2514_3210_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|3227_4049_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
4033:4049	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266158.1|4191_5412_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|5499_6228_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|6251_6980_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|6996_7455_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|7466_7799_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|7991_8255_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|8247_8520_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|8531_8705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|8671_8875_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|8876_9260_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|9260_9509_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000985235.1|9600_11973_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|12643_12988_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|13212_13419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|13405_14464_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|14647_15139_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|15567_16536_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|16770_17325_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
17989:18005	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 2
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	181642	190115	2917985		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|181642_182125_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|182111_183236_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|183239_183944_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|183943_184207_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|184208_184880_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|184872_187062_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|187040_188525_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|188517_189546_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|189548_190115_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 3
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	631908	714159	2917985	integrase,tRNA,plate,portal,holin,terminase,head,capsid,protease,tail	Staphylococcus_phage(85.33%)	103	668271:668291	714164:714184
WP_000858789.1|631908_633201_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|633522_636216_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|636239_637211_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|637197_638400_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|638404_639547_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|639787_640105_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|640441_641122_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|641193_641781_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|641770_642346_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|642359_643604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|643610_644909_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|644918_645983_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|646008_647175_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|647560_647761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|647969_648419_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|648510_649470_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|649471_650197_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|650199_650772_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|651202_651475_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|651645_652644_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|652660_653971_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|654192_655368_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|655624_655816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|655932_656049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|656079_656739_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|656815_657784_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|657898_658885_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|659045_659162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|659286_660747_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|660899_662279_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|662268_663222_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|663329_663578_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|663683_664229_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|664507_664627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|664825_665740_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|665754_665961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|665953_666892_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|666948_667866_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|667956_668142_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
668271:668291	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|668390_669374_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|669369_670308_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|670697_672152_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|672162_672465_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|672600_672900_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|672945_673110_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|673102_673492_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|673491_674958_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|674957_676868_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|676883_677174_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|677173_678757_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|678765_679590_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|679589_685790_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|685803_685962_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|686003_686354_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|686411_686867_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|686958_687600_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|687634_688030_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|688030_688432_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|688428_688761_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|688772_689051_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|689119_690283_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|690294_691068_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|691051_692290_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|692294_693986_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|693975_694281_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|694407_694722_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|694878_695316_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|695328_696696_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|696676_696967_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|697100_697199_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|697307_699755_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|700042_700243_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|700310_700463_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|700459_700846_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|700838_701075_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|701067_701271_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|701267_701474_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|701510_702047_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|702039_702288_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|702302_702545_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|702559_702760_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|702762_703020_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|703019_703421_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|703420_703606_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|703618_705571_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|705638_706196_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|706221_707388_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|707384_707747_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|707760_708021_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|708025_708328_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|708320_708638_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|708903_709167_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|709191_709407_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|709453_709693_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|709689_709866_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|709949_710141_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|710301_710631_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|710643_711105_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|711122_711557_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|711585_711981_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|712070_712217_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|712213_712828_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|712953_714159_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
714164:714184	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 4
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	774977	783289	2917985	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|774977_775763_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|775888_776779_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|776788_778135_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|778248_779349_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|779351_780029_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|780159_781266_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|781489_783289_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 5
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	852426	861469	2917985	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|852426_852945_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|852966_855240_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|855442_857722_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|857996_858257_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|858275_859415_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|859437_860463_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|860464_861469_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	986925	1066268	2917985	protease,tRNA,transposase	Staphylococcus_phage(94.74%)	73	NA	NA
WP_001050548.1|986925_993486_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_052833472.1|993811_994123_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001549041.1|994144_996562_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|996849_998031_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|998140_999094_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|999090_999654_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|999773_1000175_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1001753_1002581_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1002583_1002703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1002814_1003816_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1003937_1004402_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1004414_1005596_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1005606_1006239_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1006245_1007289_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1007769_1009272_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1009794_1010109_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1010108_1011401_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1011418_1011814_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1012108_1012963_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1013238_1013463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1013661_1014132_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1014244_1014688_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1014674_1015118_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1015413_1016049_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1016488_1017202_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1017461_1017764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1018019_1018385_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1018381_1018735_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1020829_1021663_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1021874_1022783_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1022907_1024101_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1024471_1026064_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000639100.1|1026199_1026601_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_002868962.1|1027059_1027806_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1027810_1028284_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1028349_1028607_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1028603_1029605_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1029609_1031088_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1031246_1031702_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1032004_1032655_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1032735_1033731_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000627551.1|1034473_1034818_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1034915_1035467_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1035684_1036326_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1036439_1036625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1036626_1036803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1036813_1037197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1037800_1037944_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1038146_1038242_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1038364_1038466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1038813_1039191_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072576.1|1044672_1045872_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1045864_1047421_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1047584_1047719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1047783_1048503_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1048653_1049370_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1049471_1049579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1049527_1050247_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1050367_1051087_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1051144_1051867_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1051991_1052699_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_052833506.1|1053662_1054229_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	1.2e-98
WP_000586140.1|1054702_1055401_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1055397_1056159_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1056155_1056848_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1056870_1058244_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1058253_1058772_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1058787_1060032_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1060024_1063018_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1063082_1063226_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1063962_1064106_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1064347_1065331_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1065332_1066268_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 7
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1096928	1172092	2917985	integrase,tRNA,plate,transposase,holin,portal,head,capsid,terminase,tail	Staphylococcus_phage(67.14%)	93	1123751:1123765	1172434:1172448
WP_000181398.1|1096928_1097399_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379978.1|1097403_1098531_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1098681_1099404_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649907.1|1099396_1100854_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1101111_1102173_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001549130.1|1102665_1104027_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_031784974.1|1104002_1104116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110011.1|1112440_1112887_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869455.1|1112983_1113934_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939521.1|1113939_1114395_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011598.1|1114475_1115765_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1116057_1117152_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001791878.1|1117241_1117334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597238.1|1117342_1119079_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|1119369_1119912_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284752.1|1120213_1121251_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1121402_1122380_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886468.1|1122640_1123477_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|1123485_1125003_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
1123751:1123765	attL	CTATTAAAGTATGCA	NA	NA	NA	NA
WP_000435806.1|1125017_1125332_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124419.1|1125309_1126128_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_052833505.1|1126388_1127198_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1127538_1128054_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1128184_1128346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011447034.1|1128672_1128774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000528632.1|1128887_1129445_-	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
WP_001286805.1|1130080_1130266_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|1130267_1130378_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1130448_1130601_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148142.1|1130844_1132290_-	SH3 domain-containing protein	NA	S4V6E6	Staphylococcus_phage	100.0	1.8e-295
WP_000354135.1|1132270_1132708_-|holin	phage holin	holin	S4V690	Staphylococcus_phage	100.0	1.2e-72
WP_000398882.1|1132763_1133159_-	hypothetical protein	NA	S4V997	Staphylococcus_phage	100.0	1.6e-68
WP_000276624.1|1133164_1134337_-|plate	BppU family phage baseplate upper protein	plate	S4V7L6	Staphylococcus_phage	100.0	3.8e-198
WP_052833504.1|1134349_1136248_-	glucosaminidase domain-containing protein	NA	S4V9N2	Staphylococcus_phage	98.7	0.0e+00
WP_000466779.1|1136384_1136684_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	99.0	1.3e-46
WP_001800921.1|1136724_1136898_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000705907.1|1136901_1137279_-	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_052833503.1|1137278_1139102_-|plate	BppU family phage baseplate upper protein	plate	A0A0H3U4S6	Staphylococcus_phage	99.2	0.0e+00
WP_052833502.1|1139101_1141012_-	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	98.9	0.0e+00
WP_052833501.1|1141026_1142928_-|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	99.4	0.0e+00
WP_000350684.1|1142936_1143884_-|tail	phage tail family protein	tail	A0EWU0	Staphylococcus_virus	100.0	3.6e-183
WP_052833500.1|1143896_1147361_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	98.6	3.1e-264
WP_000105584.1|1147377_1147722_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|1147751_1148117_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002581.1|1148179_1148761_-|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	99.5	7.0e-105
WP_000188655.1|1148780_1149164_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	99.2	2.9e-67
WP_001017810.1|1149175_1149523_-	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	99.1	2.0e-59
WP_001270300.1|1149522_1149825_-	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	92.0	1.1e-48
WP_029753403.1|1149821_1150154_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	98.2	6.1e-53
WP_001114090.1|1150162_1150450_-	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	98.9	1.4e-45
WP_029753400.1|1150471_1151446_-|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	98.1	1.0e-180
WP_000354309.1|1151459_1152074_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_000072207.1|1152208_1152379_-	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_052833499.1|1152451_1153447_-|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
WP_000921884.1|1153453_1154989_-|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	97.8	1.3e-286
WP_031869843.1|1154999_1156295_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	98.1	3.5e-253
WP_001004406.1|1156297_1156792_-|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	97.0	9.6e-87
WP_000058633.1|1156978_1157398_-	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	99.3	2.4e-70
WP_000989997.1|1157412_1157559_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	97.9	6.4e-15
WP_001806316.1|1157559_1157733_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	91.2	2.1e-20
WP_001125015.1|1157735_1157936_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195802.1|1157910_1158099_-	DUF1381 domain-containing protein	NA	A0A2I6PF34	Staphylococcus_phage	96.8	5.7e-24
WP_000120373.1|1158095_1158341_-	hypothetical protein	NA	B7T0C1	Staphylococcus_virus	100.0	5.3e-22
WP_000185680.1|1158377_1158914_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_001065072.1|1158906_1159155_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	98.8	7.0e-38
WP_001105615.1|1159147_1159513_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	94.5	1.2e-49
WP_000695752.1|1159509_1159914_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	4.6e-71
WP_000131395.1|1159926_1160169_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	96.2	7.3e-40
WP_052833498.1|1160172_1160532_-	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	70.7	3.5e-38
WP_001187254.1|1160532_1160718_-	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
WP_000049807.1|1160722_1161127_-	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	97.8	3.0e-70
WP_001123673.1|1161136_1161358_-	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_000256593.1|1161370_1161529_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	96.2	9.9e-22
WP_000803043.1|1161522_1162296_-	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	98.4	3.3e-142
WP_000504989.1|1162305_1163109_-	phage replisome organizer N-terminal domain-containing protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	99.6	2.5e-121
WP_001573855.1|1163544_1163859_-	hypothetical protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	63.4	8.3e-28
WP_001199424.1|1163858_1164524_-	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	100.0	1.1e-125
WP_000704713.1|1164536_1165091_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_000139741.1|1165120_1165900_-	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
WP_052833497.1|1165892_1166114_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	98.6	9.3e-34
WP_000291098.1|1166123_1166384_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	2.9e-42
WP_000066011.1|1166477_1166639_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594790.1|1166631_1166853_-	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
WP_000122244.1|1166923_1167169_+	hypothetical protein	NA	E9LT77	Staphylococcus_phage	97.5	1.0e-36
WP_001555746.1|1167124_1167340_-	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
WP_001148857.1|1167370_1167565_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
WP_001148564.1|1167581_1168370_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.2	1.0e-143
WP_001198673.1|1168385_1168604_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358224.1|1168745_1169465_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_000705238.1|1169534_1169702_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000392183.1|1169841_1170774_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|1170753_1170933_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145716.1|1171045_1172092_+|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	99.4	6.1e-200
1172434:1172448	attR	CTATTAAAGTATGCA	NA	NA	NA	NA
>prophage 8
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1194907	1291302	2917985	integrase,tRNA,portal,holin,terminase,head,capsid,protease,tail	Staphylococcus_phage(91.03%)	117	1256293:1256310	1281224:1281241
WP_000027928.1|1194907_1196365_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1196366_1196669_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|1197035_1198574_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|1198662_1199862_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1199874_1201878_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1201881_1204074_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|1204070_1204763_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1204934_1205237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1205345_1206641_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|1207501_1208668_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1208698_1209025_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1209276_1209450_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|1209430_1210033_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|1210303_1211125_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|1211117_1212587_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|1212770_1213847_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|1213866_1214661_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1214732_1214840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|1214850_1216413_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|1216617_1217715_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|1218086_1218647_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1218699_1219629_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1219823_1219997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|1220048_1221428_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1221547_1222576_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1222845_1223247_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1223819_1223993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052833495.1|1224443_1225484_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1225540_1226383_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1226379_1226937_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1226996_1227521_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1227641_1228205_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1228270_1229011_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1229010_1229883_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|1229879_1230560_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|1230560_1231457_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1231453_1231834_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1232097_1232274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1232516_1232615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1232814_1234101_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|1234725_1236480_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|1237437_1237617_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1237927_1238188_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1238240_1238591_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1239275_1239725_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|1240804_1241296_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1241486_1242242_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1242253_1242508_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1242559_1242667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1242719_1242896_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1243045_1243342_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1243399_1243687_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1243733_1243886_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_052833494.1|1243875_1247661_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_000567394.1|1247676_1249161_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001551779.1|1249157_1253687_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001549167.1|1253743_1253881_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|1253931_1254282_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|1254331_1254571_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|1254597_1255242_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|1255245_1255650_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|1255646_1256051_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|1256047_1256410_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1256293:1256310	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|1256393_1256678_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1256667_1256952_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1256971_1258117_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1258140_1258878_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1258861_1260049_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1260064_1261726_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1261722_1262067_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1262196_1262496_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1262727_1263144_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1263171_1263372_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|1263371_1263521_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1263517_1263904_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1263900_1264107_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|1264103_1264349_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|1264385_1264919_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|1264911_1265154_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|1265143_1265380_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|1265372_1265744_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|1265752_1265995_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|1265998_1266367_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|1266379_1266784_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|1266792_1267011_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|1267017_1267911_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|1267940_1268411_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|1268411_1269029_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|1269109_1270030_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|1270031_1271975_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|1271983_1272247_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|1272255_1272516_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|1272555_1272816_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|1272910_1273072_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|1273068_1273389_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|1273447_1273678_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|1273674_1273851_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|1273866_1274619_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|1274669_1274999_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|1274987_1275203_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|1275218_1275482_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|1275478_1275652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1275614_1276328_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1276343_1277276_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1277281_1277623_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|1277826_1278009_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|1278086_1278800_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|1278990_1280028_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|1281146_1282163_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
1281224:1281241	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|1282184_1283240_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|1283674_1284898_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|1285269_1286115_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|1286176_1287088_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|1287248_1288556_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|1289408_1289852_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|1290016_1290394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|1290711_1291302_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 9
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	2806179	2813999	2917985		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|2806179_2807235_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|2807234_2807921_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2807895_2808369_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|2808710_2809151_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|2809430_2810015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2810113_2810827_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2810830_2811250_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2811251_2811920_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|2812270_2812864_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|2812847_2813999_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 10
NZ_CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	2825971	2840702	2917985		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|2825971_2827030_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|2827380_2827923_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|2828546_2829464_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|2829554_2829656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|2829733_2831239_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|2831579_2832080_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|2832099_2832966_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2833766_2834165_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2834127_2836233_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2836350_2837322_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|2837835_2837991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2838029_2839001_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|2838987_2839944_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|2839940_2840702_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
