assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	1	275041-275137	1	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-A	GGCACAGCCTGAGCGGTCAGCGG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|58aa|up_4|NZ_LN868939.1_268575_268749_-,NA|153aa|down_1|NZ_LN868939.1_276192_276651_-,NA|166aa|down_4|NZ_LN868939.1_278891_279389_-	NA|303aa|up_9|NZ_LN868939.1_264712_265621_+	TIGR03213, Biphenyl-23-diol_12-dioxygenase_1, 2,3-dihydroxybiphenyl 1,2-dioxygenase	NA|196aa|up_8|NZ_LN868939.1_265667_266255_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|219aa|up_7|NZ_LN868939.1_266328_266985_+	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|129aa|up_6|NZ_LN868939.1_266984_267371_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|379aa|up_5|NZ_LN868939.1_267436_268573_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|58aa|up_4|NZ_LN868939.1_268575_268749_-	NA	NA|346aa|up_3|NZ_LN868939.1_268836_269874_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|303aa|up_2|NZ_LN868939.1_269887_270796_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|262aa|up_1|NZ_LN868939.1_270806_271592_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|545aa|up_0|NZ_LN868939.1_271593_273228_-	PRK07121, PRK07121, FAD-binding protein	NA|287aa|down_0|NZ_LN868939.1_275245_276106_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|153aa|down_1|NZ_LN868939.1_276192_276651_-	NA	NA|425aa|down_2|NZ_LN868939.1_276647_277922_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|321aa|down_3|NZ_LN868939.1_277918_278881_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|166aa|down_4|NZ_LN868939.1_278891_279389_-	NA	NA|324aa|down_5|NZ_LN868939.1_279385_280357_-	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|317aa|down_6|NZ_LN868939.1_280478_281429_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|195aa|down_7|NZ_LN868939.1_281508_282093_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|152aa|down_8|NZ_LN868939.1_282089_282545_-	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|388aa|down_9|NZ_LN868939.1_282590_283754_-	PRK07855, PRK07855, lipid-transfer protein; Provisional
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2	471866-471971	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	AGCGCAGCGTCACCACGCAGGGCGCCCC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|239aa|up_2|NZ_LN868939.1_469900_470617_-,NA|216aa|down_4|NZ_LN868939.1_477298_477946_+	NA|1207aa|up_9|NZ_LN868939.1_455427_459048_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|712aa|up_8|NZ_LN868939.1_459241_461377_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|405aa|up_7|NZ_LN868939.1_461431_462646_-	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|804aa|up_6|NZ_LN868939.1_462903_465315_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|308aa|up_5|NZ_LN868939.1_465365_466289_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|539aa|up_4|NZ_LN868939.1_466618_468235_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|422aa|up_3|NZ_LN868939.1_468257_469523_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|239aa|up_2|NZ_LN868939.1_469900_470617_-	NA	NA|194aa|up_1|NZ_LN868939.1_470727_471309_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|151aa|up_0|NZ_LN868939.1_471389_471842_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|269aa|down_0|NZ_LN868939.1_473090_473897_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|146aa|down_1|NZ_LN868939.1_473910_474348_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|430aa|down_2|NZ_LN868939.1_474353_475643_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|311aa|down_3|NZ_LN868939.1_476207_477140_-	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|216aa|down_4|NZ_LN868939.1_477298_477946_+	NA	NA|481aa|down_5|NZ_LN868939.1_478072_479515_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|70aa|down_6|NZ_LN868939.1_479608_479818_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|170aa|down_7|NZ_LN868939.1_480241_480751_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|312aa|down_8|NZ_LN868939.1_480743_481679_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|234aa|down_9|NZ_LN868939.1_481737_482439_+	pfam06271, RDD, RDD family
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	3	477939-478043	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGCCTGAGCGGTCAGCGGCCGGAGGCGG	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|239aa|up_6|NZ_LN868939.1_469900_470617_-,NA	NA|308aa|up_9|NZ_LN868939.1_465365_466289_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|539aa|up_8|NZ_LN868939.1_466618_468235_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|422aa|up_7|NZ_LN868939.1_468257_469523_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|239aa|up_6|NZ_LN868939.1_469900_470617_-	NA	NA|194aa|up_5|NZ_LN868939.1_470727_471309_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|151aa|up_4|NZ_LN868939.1_471389_471842_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|269aa|up_3|NZ_LN868939.1_473090_473897_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|146aa|up_2|NZ_LN868939.1_473910_474348_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|430aa|up_1|NZ_LN868939.1_474353_475643_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|311aa|up_0|NZ_LN868939.1_476207_477140_-	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|481aa|down_0|NZ_LN868939.1_478072_479515_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|70aa|down_1|NZ_LN868939.1_479608_479818_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|170aa|down_2|NZ_LN868939.1_480241_480751_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|312aa|down_3|NZ_LN868939.1_480743_481679_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|234aa|down_4|NZ_LN868939.1_481737_482439_+	pfam06271, RDD, RDD family	NA|179aa|down_5|NZ_LN868939.1_482502_483039_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|238aa|down_6|NZ_LN868939.1_483137_483851_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|420aa|down_7|NZ_LN868939.1_483869_485129_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|640aa|down_8|NZ_LN868939.1_485180_487100_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_9|NZ_LN868939.1_487096_488833_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	4	1179670-1179777	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTCGCCCGGCCCGACCTCACGACC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|94aa|down_9|NZ_LN868939.1_1190374_1190656_+	NA|287aa|up_9|NZ_LN868939.1_1168385_1169246_+	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|690aa|up_8|NZ_LN868939.1_1169247_1171317_-	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|295aa|up_7|NZ_LN868939.1_1171455_1172340_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|349aa|up_6|NZ_LN868939.1_1172342_1173389_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|347aa|up_5|NZ_LN868939.1_1173544_1174585_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|468aa|up_4|NZ_LN868939.1_1174764_1176168_+	PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed	NA|235aa|up_3|NZ_LN868939.1_1176309_1177014_+	cd10956, CE4_BH1302_like, Putative catalytic NodB homology domain of uncharacterized BH1302 protein from Bacillus halodurans and its bacterial homologs	NA|144aa|up_2|NZ_LN868939.1_1177003_1177435_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|125aa|up_1|NZ_LN868939.1_1177514_1177889_-	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|182aa|up_0|NZ_LN868939.1_1177989_1178535_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|233aa|down_0|NZ_LN868939.1_1180252_1180951_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|231aa|down_1|NZ_LN868939.1_1180957_1181650_-	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|293aa|down_2|NZ_LN868939.1_1181633_1182512_-	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|381aa|down_3|NZ_LN868939.1_1182508_1183651_-	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|295aa|down_4|NZ_LN868939.1_1183647_1184532_-	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|425aa|down_5|NZ_LN868939.1_1184535_1185810_-	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein	NA|469aa|down_6|NZ_LN868939.1_1185981_1187388_-	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|524aa|down_7|NZ_LN868939.1_1187526_1189098_+	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed	NA|390aa|down_8|NZ_LN868939.1_1189192_1190362_+	pfam01384, PHO4, Phosphate transporter family	NA|94aa|down_9|NZ_LN868939.1_1190374_1190656_+	NA
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	5	1449339-1449672	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGG---GAGCAC	29,29,32	0	0	NA	NA	I-E:I-E:NA	5,5,4	5	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|51aa|down_9|NZ_LN868939.1_1504539_1504692_+	NA|418aa|up_9|NZ_LN868939.1_1436724_1437978_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|417aa|up_8|NZ_LN868939.1_1438145_1439396_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|up_7|NZ_LN868939.1_1439554_1440259_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|649aa|up_6|NZ_LN868939.1_1440292_1442239_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|275aa|up_5|NZ_LN868939.1_1442263_1443088_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|168aa|up_4|NZ_LN868939.1_1443084_1443588_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|387aa|up_3|NZ_LN868939.1_1443584_1444745_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|696aa|up_2|NZ_LN868939.1_1444741_1446829_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|532aa|up_1|NZ_LN868939.1_1446837_1448433_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|210aa|up_0|NZ_LN868939.1_1448551_1449181_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|586aa|down_0|NZ_LN868939.1_1449931_1451689_-	PLN02286, PLN02286, arginine-tRNA ligase	NA|242aa|down_1|NZ_LN868939.1_1451747_1452473_-	COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	NA|306aa|down_2|NZ_LN868939.1_1452469_1453387_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|466aa|down_3|NZ_LN868939.1_1453383_1454781_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|246aa|down_4|NZ_LN868939.1_1455246_1455984_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|196aa|down_5|NZ_LN868939.1_1456006_1456594_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|252aa|down_6|NZ_LN868939.1_1457816_1458572_+	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|202aa|down_7|NZ_LN868939.1_1502534_1503140_-	smart00746, TRASH, metallochaperone-like domain	NA|205aa|down_8|NZ_LN868939.1_1503819_1504434_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|51aa|down_9|NZ_LN868939.1_1504539_1504692_+	NA
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	6	1456864-1457562	2,2,6	CRT,PILER-CR,CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	NGGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGG---GAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC	30,32,29	1	1	1457441-1457472	NZ_LN868938.1_221163-221132	I-E	11,10,10	11	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|51aa|down_3|NZ_LN868939.1_1504539_1504692_+,NA|176aa|down_5|NZ_LN868939.1_1506316_1506844_-	NA|387aa|up_9|NZ_LN868939.1_1443584_1444745_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|696aa|up_8|NZ_LN868939.1_1444741_1446829_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|532aa|up_7|NZ_LN868939.1_1446837_1448433_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|210aa|up_6|NZ_LN868939.1_1448551_1449181_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|586aa|up_5|NZ_LN868939.1_1449931_1451689_-	PLN02286, PLN02286, arginine-tRNA ligase	NA|242aa|up_4|NZ_LN868939.1_1451747_1452473_-	COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	NA|306aa|up_3|NZ_LN868939.1_1452469_1453387_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|466aa|up_2|NZ_LN868939.1_1453383_1454781_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|246aa|up_1|NZ_LN868939.1_1455246_1455984_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|196aa|up_0|NZ_LN868939.1_1456006_1456594_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|252aa|down_0|NZ_LN868939.1_1457816_1458572_+	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|202aa|down_1|NZ_LN868939.1_1502534_1503140_-	smart00746, TRASH, metallochaperone-like domain	NA|205aa|down_2|NZ_LN868939.1_1503819_1504434_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|51aa|down_3|NZ_LN868939.1_1504539_1504692_+	NA	NA|499aa|down_4|NZ_LN868939.1_1504719_1506216_-	pfam02342, TerD, TerD domain	NA|176aa|down_5|NZ_LN868939.1_1506316_1506844_-	NA	NA|267aa|down_6|NZ_LN868939.1_1506907_1507708_-	pfam04454, Linocin_M18, Encapsulating protein for peroxidase	NA|348aa|down_7|NZ_LN868939.1_1507704_1508748_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|109aa|down_8|NZ_LN868939.1_1508765_1509092_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|172aa|down_9|NZ_LN868939.1_1509281_1509797_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	7	1687970-1688090	7	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACC	44	1	2	1688014-1688046|1688014-1688046	NZ_LN868938.1_3021529-3021497|NZ_LN868938.1_3287934-3287902	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|99aa|down_5|NZ_LN868939.1_1693746_1694043_+,NA|643aa|down_6|NZ_LN868939.1_1694039_1695968_+,NA|292aa|down_7|NZ_LN868939.1_1696009_1696885_+	NA|490aa|up_9|NZ_LN868939.1_1678791_1680261_-	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA	NA|337aa|up_8|NZ_LN868939.1_1680320_1681331_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|384aa|up_7|NZ_LN868939.1_1681302_1682454_-	TIGR03946, viomycin_VioC, arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent	NA|241aa|up_6|NZ_LN868939.1_1682700_1683423_+	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|429aa|up_5|NZ_LN868939.1_1683534_1684821_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_4|NZ_LN868939.1_1684854_1685526_+	pfam04977, DivIC, Septum formation initiator	NA|176aa|up_3|NZ_LN868939.1_1685522_1686050_+	COG1507, COG1507, Uncharacterized conserved protein [Function unknown]	NA|316aa|up_2|NZ_LN868939.1_1686042_1686990_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|219aa|up_1|NZ_LN868939.1_1687048_1687705_+	PRK14967, PRK14967, putative methyltransferase; Provisional	NA|70aa|up_0|NZ_LN868939.1_1687757_1687967_+	pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type	NA|336aa|down_0|NZ_LN868939.1_1688168_1689176_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|150aa|down_1|NZ_LN868939.1_1689234_1689684_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|489aa|down_2|NZ_LN868939.1_1689815_1691282_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|496aa|down_3|NZ_LN868939.1_1691298_1692786_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|69aa|down_4|NZ_LN868939.1_1693269_1693476_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|99aa|down_5|NZ_LN868939.1_1693746_1694043_+	NA	NA|643aa|down_6|NZ_LN868939.1_1694039_1695968_+	NA	NA|292aa|down_7|NZ_LN868939.1_1696009_1696885_+	NA	NA|147aa|down_8|NZ_LN868939.1_1697153_1697594_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|264aa|down_9|NZ_LN868939.1_1698127_1698919_+	pfam01381, HTH_3, Helix-turn-helix
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	8	1876499-1876622	8	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CACCGCCCGACCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACC	47	1	1	1876546-1876575	NZ_LN868939.1_161588-161559	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|241aa|up_7|NZ_LN868939.1_1866026_1866749_-,NA|160aa|up_2|NZ_LN868939.1_1871335_1871815_+,NA|133aa|down_5|NZ_LN868939.1_1882219_1882618_-	NA|260aa|up_9|NZ_LN868939.1_1864309_1865089_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|315aa|up_8|NZ_LN868939.1_1865085_1866030_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|241aa|up_7|NZ_LN868939.1_1866026_1866749_-	NA	NA|366aa|up_6|NZ_LN868939.1_1866885_1867983_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|265aa|up_5|NZ_LN868939.1_1868021_1868816_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|421aa|up_4|NZ_LN868939.1_1868918_1870181_+	pfam00501, AMP-binding, AMP-binding enzyme	NA|249aa|up_3|NZ_LN868939.1_1870184_1870931_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|160aa|up_2|NZ_LN868939.1_1871335_1871815_+	NA	NA|396aa|up_1|NZ_LN868939.1_1871896_1873084_+	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2	NA|1114aa|up_0|NZ_LN868939.1_1873084_1876426_-	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|603aa|down_0|NZ_LN868939.1_1876638_1878447_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|285aa|down_1|NZ_LN868939.1_1878509_1879364_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|207aa|down_2|NZ_LN868939.1_1879377_1879998_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|280aa|down_3|NZ_LN868939.1_1880002_1880842_-	pfam14011, ESX-1_EspG, EspG family	NA|463aa|down_4|NZ_LN868939.1_1880838_1882227_-	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer	NA|133aa|down_5|NZ_LN868939.1_1882219_1882618_-	NA	NA|246aa|down_6|NZ_LN868939.1_1882683_1883421_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|237aa|down_7|NZ_LN868939.1_1883532_1884243_-	PRK10811, rne, ribonuclease E; Reviewed	NA|391aa|down_8|NZ_LN868939.1_1884476_1885649_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|377aa|down_9|NZ_LN868939.1_1885658_1886789_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	9	1887944-1888068	9	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACC	46	0	0	NA	NA	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|133aa|up_5|NZ_LN868939.1_1882219_1882618_-,NA	NA|285aa|up_9|NZ_LN868939.1_1878509_1879364_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|207aa|up_8|NZ_LN868939.1_1879377_1879998_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|280aa|up_7|NZ_LN868939.1_1880002_1880842_-	pfam14011, ESX-1_EspG, EspG family	NA|463aa|up_6|NZ_LN868939.1_1880838_1882227_-	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer	NA|133aa|up_5|NZ_LN868939.1_1882219_1882618_-	NA	NA|246aa|up_4|NZ_LN868939.1_1882683_1883421_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|237aa|up_3|NZ_LN868939.1_1883532_1884243_-	PRK10811, rne, ribonuclease E; Reviewed	NA|391aa|up_2|NZ_LN868939.1_1884476_1885649_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|377aa|up_1|NZ_LN868939.1_1885658_1886789_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|168aa|up_0|NZ_LN868939.1_1886847_1887351_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|276aa|down_0|NZ_LN868939.1_1888166_1888994_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|317aa|down_1|NZ_LN868939.1_1888978_1889929_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|257aa|down_2|NZ_LN868939.1_1890190_1890961_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|575aa|down_3|NZ_LN868939.1_1892971_1894696_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|549aa|down_4|NZ_LN868939.1_1894699_1896346_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|162aa|down_5|NZ_LN868939.1_1896350_1896836_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|531aa|down_6|NZ_LN868939.1_1896854_1898447_-	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed	NA|490aa|down_7|NZ_LN868939.1_1898673_1900143_+	TIGR04284, aldehyde_dehydrogenase, aldehyde dehydrogenase, Rv0768 family	NA|250aa|down_8|NZ_LN868939.1_1900178_1900928_+	PRK07774, PRK07774, SDR family oxidoreductase	NA|293aa|down_9|NZ_LN868939.1_1900924_1901803_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	10	1970102-1970226	10	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACGCGTGCGCTGCCGGCTCCGGGCGCTGACCCGGCTCAGGCGGTG	45	0	0	NA	NA	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|170aa|down_2|NZ_LN868939.1_1974314_1974824_-	NA|386aa|up_9|NZ_LN868939.1_1958367_1959525_+	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|495aa|up_8|NZ_LN868939.1_1959607_1961092_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|216aa|up_7|NZ_LN868939.1_1961091_1961739_+	PRK07933, PRK07933, dTMP kinase	NA|229aa|up_6|NZ_LN868939.1_1961809_1962496_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|589aa|up_5|NZ_LN868939.1_1962591_1964358_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|605aa|up_4|NZ_LN868939.1_1964354_1966169_+	PRK13616, PRK13616, MtrAB system accessory protein LpqB	NA|215aa|up_3|NZ_LN868939.1_1966265_1966910_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|227aa|up_2|NZ_LN868939.1_1967185_1967866_+	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95	NA|431aa|up_1|NZ_LN868939.1_1968009_1969302_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed	NA|218aa|up_0|NZ_LN868939.1_1969380_1970034_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|485aa|down_0|NZ_LN868939.1_1971555_1973010_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|379aa|down_1|NZ_LN868939.1_1973058_1974195_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|170aa|down_2|NZ_LN868939.1_1974314_1974824_-	NA	NA|469aa|down_3|NZ_LN868939.1_1974864_1976271_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|938aa|down_4|NZ_LN868939.1_1976626_1979440_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|388aa|down_5|NZ_LN868939.1_1979595_1980759_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|251aa|down_6|NZ_LN868939.1_1980895_1981648_+	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	NA|452aa|down_7|NZ_LN868939.1_1981644_1983000_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|105aa|down_8|NZ_LN868939.1_1983441_1983756_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|103aa|down_9|NZ_LN868939.1_1983777_1984086_+	pfam06013, WXG100, Proteins of 100 residues with WXG
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	11	2140312-2140706	3,11,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11	csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCATGCGGGGATGAGCCC,GTGCTCCCCGCGCATGCGGGGATGAGCCC,GTGCTCCCCGCGCATGCGGGGATGAGCCC	29,29,29	1	1	2140585-2140616	NZ_LN868938.1_220626-220595	N:A	5,6,6	6	TypeI-E	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|131aa|up_9|NZ_LN868939.1_2130103_2130496_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|138aa|up_8|NZ_LN868939.1_2130546_2130960_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|304aa|up_7|NZ_LN868939.1_2131140_2132052_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|249aa|up_6|NZ_LN868939.1_2132176_2132923_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|433aa|up_5|NZ_LN868939.1_2132945_2134244_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|228aa|up_4|NZ_LN868939.1_2134298_2134982_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|141aa|up_3|NZ_LN868939.1_2135148_2135571_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|121aa|up_2|NZ_LN868939.1_2135656_2136019_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|429aa|up_1|NZ_LN868939.1_2137699_2138986_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|247aa|up_0|NZ_LN868939.1_2139020_2139761_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|down_0|NZ_LN868939.1_2140925_2141723_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|down_1|NZ_LN868939.1_2143211_2144678_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|down_2|NZ_LN868939.1_2144744_2145290_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|down_3|NZ_LN868939.1_2145289_2148682_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|388aa|down_4|NZ_LN868939.1_2148683_2149847_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|down_5|NZ_LN868939.1_2150336_2151125_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|down_6|NZ_LN868939.1_2151165_2152689_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|down_7|NZ_LN868939.1_2152755_2153334_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|111aa|down_8|NZ_LN868939.1_2153333_2153666_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	cas3|915aa|down_9|NZ_LN868939.1_2154708_2157453_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	12	2142411-2142866	12,4	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e	csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GTGCTCCCCGCGCACGCGGGGATGAGCCC	29,29	0	0	NA	NA	N:A	7,7	7	TypeI-E	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|138aa|up_9|NZ_LN868939.1_2130546_2130960_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|304aa|up_8|NZ_LN868939.1_2131140_2132052_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|249aa|up_7|NZ_LN868939.1_2132176_2132923_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|433aa|up_6|NZ_LN868939.1_2132945_2134244_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|228aa|up_5|NZ_LN868939.1_2134298_2134982_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|141aa|up_4|NZ_LN868939.1_2135148_2135571_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|121aa|up_3|NZ_LN868939.1_2135656_2136019_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|429aa|up_2|NZ_LN868939.1_2137699_2138986_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|247aa|up_1|NZ_LN868939.1_2139020_2139761_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|up_0|NZ_LN868939.1_2140925_2141723_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|down_0|NZ_LN868939.1_2143211_2144678_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|down_1|NZ_LN868939.1_2144744_2145290_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|down_2|NZ_LN868939.1_2145289_2148682_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|388aa|down_3|NZ_LN868939.1_2148683_2149847_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|down_4|NZ_LN868939.1_2150336_2151125_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|down_5|NZ_LN868939.1_2151165_2152689_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|down_6|NZ_LN868939.1_2152755_2153334_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|111aa|down_7|NZ_LN868939.1_2153333_2153666_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	cas3|915aa|down_8|NZ_LN868939.1_2154708_2157453_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|down_9|NZ_LN868939.1_2157449_2159108_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	13	2153826-2154343	13,5	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GTGCTCCCCGCGNACGCGGGGATGAGCCC	29,29	0	0	NA	NA	N:A	8,8	8	TypeI-E	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|247aa|up_9|NZ_LN868939.1_2139020_2139761_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|up_8|NZ_LN868939.1_2140925_2141723_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|up_7|NZ_LN868939.1_2143211_2144678_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|up_6|NZ_LN868939.1_2144744_2145290_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|up_5|NZ_LN868939.1_2145289_2148682_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|388aa|up_4|NZ_LN868939.1_2148683_2149847_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|up_3|NZ_LN868939.1_2150336_2151125_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|up_2|NZ_LN868939.1_2151165_2152689_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|up_1|NZ_LN868939.1_2152755_2153334_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|111aa|up_0|NZ_LN868939.1_2153333_2153666_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	cas3|915aa|down_0|NZ_LN868939.1_2154708_2157453_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|down_1|NZ_LN868939.1_2157449_2159108_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|217aa|down_2|NZ_LN868939.1_2159079_2159730_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|380aa|down_3|NZ_LN868939.1_2159726_2160866_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|down_4|NZ_LN868939.1_2160862_2161570_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|down_5|NZ_LN868939.1_2161569_2162244_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|down_6|NZ_LN868939.1_2162240_2163191_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|down_7|NZ_LN868939.1_2163184_2163562_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|727aa|down_8|NZ_LN868939.1_2165781_2167962_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|139aa|down_9|NZ_LN868939.1_2168277_2168694_+	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	14	2163603-2164668	4,14,6	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCGTGCGGGGATGAGC,GTGCTCCCCGCGCGTGCGGGGATGAGCCC,GTGCTCCCCGCGCGTGCGGGGATGAGCC	27,29,28	2	2	2163998-2164029|2163997-2164029	NZ_LN868942.1_5299-5268|NZ_LN868942.1_5300-5268	N:A	17,17,17	17	TypeI-E	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|474aa|down_2|NZ_LN868939.1_2168690_2170112_+	NA|193aa|up_9|NZ_LN868939.1_2152755_2153334_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|111aa|up_8|NZ_LN868939.1_2153333_2153666_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	cas3|915aa|up_7|NZ_LN868939.1_2154708_2157453_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|up_6|NZ_LN868939.1_2157449_2159108_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|217aa|up_5|NZ_LN868939.1_2159079_2159730_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|380aa|up_4|NZ_LN868939.1_2159726_2160866_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NZ_LN868939.1_2160862_2161570_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|up_2|NZ_LN868939.1_2161569_2162244_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|up_1|NZ_LN868939.1_2162240_2163191_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|up_0|NZ_LN868939.1_2163184_2163562_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|727aa|down_0|NZ_LN868939.1_2165781_2167962_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|139aa|down_1|NZ_LN868939.1_2168277_2168694_+	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown]	NA|474aa|down_2|NZ_LN868939.1_2168690_2170112_+	NA	NA|132aa|down_3|NZ_LN868939.1_2170238_2170634_+	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|315aa|down_4|NZ_LN868939.1_2170757_2171702_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|466aa|down_5|NZ_LN868939.1_2171905_2173303_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|651aa|down_6|NZ_LN868939.1_2173299_2175252_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|221aa|down_7|NZ_LN868939.1_2175265_2175928_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_8|NZ_LN868939.1_2175936_2176941_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|291aa|down_9|NZ_LN868939.1_2176937_2177810_-	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	15	2278226-2279472	15,5,7	CRISPRCasFinder,PILER-CR,CRT	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GCTCCCCGCGCATGCGGGGATGAGCC,GCTCCCCGCGCATGCGGGGATGAGCCC	29,26,27	1	1	2278438-2278469	NZ_LN868939.1_112517-112486	N:A	20,19,20	20	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|72aa|up_0|NZ_LN868939.1_2277719_2277935_+,NA	NA|275aa|up_9|NZ_LN868939.1_2269232_2270057_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|207aa|up_8|NZ_LN868939.1_2270061_2270682_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|189aa|up_7|NZ_LN868939.1_2270832_2271399_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|78aa|up_6|NZ_LN868939.1_2271880_2272114_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|168aa|up_5|NZ_LN868939.1_2272159_2272663_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|731aa|up_4|NZ_LN868939.1_2272617_2274810_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|328aa|up_3|NZ_LN868939.1_2274875_2275859_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|205aa|up_2|NZ_LN868939.1_2275988_2276603_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|269aa|up_1|NZ_LN868939.1_2276793_2277600_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|72aa|up_0|NZ_LN868939.1_2277719_2277935_+	NA	NA|455aa|down_0|NZ_LN868939.1_2280187_2281552_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|603aa|down_1|NZ_LN868939.1_2281636_2283445_-	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|391aa|down_2|NZ_LN868939.1_2283624_2284797_+	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II	NA|321aa|down_3|NZ_LN868939.1_2285104_2286067_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|297aa|down_4|NZ_LN868939.1_2286118_2287009_-	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|356aa|down_5|NZ_LN868939.1_2287119_2288187_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|266aa|down_6|NZ_LN868939.1_2288232_2289030_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|582aa|down_7|NZ_LN868939.1_2289301_2291047_+	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|407aa|down_8|NZ_LN868939.1_2291125_2292346_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|263aa|down_9|NZ_LN868939.1_2292450_2293239_+	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2
GCF_001182745.1_NCTC11134	NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	16	2651161-2651586	8	CRT	no		csa3,cas3,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCAGGTGTGGGCCCAGGT	18	6	17	2651179-2651196|2651179-2651196|2651215-2651244|2651215-2651244|2651215-2651244|2651299-2651328|2651299-2651328|2651299-2651328|2651383-2651412|2651383-2651412|2651383-2651412|2651431-2651460|2651431-2651460|2651431-2651460|2651479-2651508|2651479-2651508|2651479-2651508	NZ_LN868939.1_2651155-2651172|NZ_LN868940.1_14277-14260|NZ_LN868939.1_2651563-2651592|NZ_LN868939.1_2651587-2651616|NZ_LN868940.1_13846-13817|NZ_LN868939.1_2651563-2651592|NZ_LN868939.1_2651587-2651616|NZ_LN868940.1_13846-13817|NZ_LN868939.1_2651563-2651592|NZ_LN868939.1_2651587-2651616|NZ_LN868940.1_13846-13817|NZ_LN868939.1_2651563-2651592|NZ_LN868939.1_2651587-2651616|NZ_LN868940.1_13846-13817|NZ_LN868939.1_2651563-2651592|NZ_LN868939.1_2651587-2651616|NZ_LN868940.1_13846-13817	N:A	9	9	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|122aa|up_9|NZ_LN868939.1_2645255_2645621_+,NA|286aa|up_8|NZ_LN868939.1_2645646_2646504_+,NA|148aa|up_7|NZ_LN868939.1_2646503_2646947_+,NA|95aa|up_6|NZ_LN868939.1_2647002_2647287_+,NA|118aa|up_5|NZ_LN868939.1_2647337_2647691_+,NA|208aa|up_4|NZ_LN868939.1_2647983_2648607_+,NA|112aa|up_3|NZ_LN868939.1_2648817_2649153_+,NA|185aa|up_1|NZ_LN868939.1_2649883_2650438_+,NA|161aa|up_0|NZ_LN868939.1_2650430_2650913_+,NA|158aa|down_0|NZ_LN868939.1_2652270_2652744_+,NA|311aa|down_1|NZ_LN868939.1_2652743_2653676_+,NA|56aa|down_2|NZ_LN868939.1_2653672_2653840_+,NA|142aa|down_3|NZ_LN868939.1_2653836_2654262_+,NA|113aa|down_6|NZ_LN868939.1_2655019_2655358_+,NA|59aa|down_7|NZ_LN868939.1_2655505_2655682_-,NA|60aa|down_8|NZ_LN868939.1_2655678_2655858_-	NA|122aa|up_9|NZ_LN868939.1_2645255_2645621_+	NA	NA|286aa|up_8|NZ_LN868939.1_2645646_2646504_+	NA	NA|148aa|up_7|NZ_LN868939.1_2646503_2646947_+	NA	NA|95aa|up_6|NZ_LN868939.1_2647002_2647287_+	NA	NA|118aa|up_5|NZ_LN868939.1_2647337_2647691_+	NA	NA|208aa|up_4|NZ_LN868939.1_2647983_2648607_+	NA	NA|112aa|up_3|NZ_LN868939.1_2648817_2649153_+	NA	NA|218aa|up_2|NZ_LN868939.1_2649237_2649891_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|185aa|up_1|NZ_LN868939.1_2649883_2650438_+	NA	NA|161aa|up_0|NZ_LN868939.1_2650430_2650913_+	NA	NA|158aa|down_0|NZ_LN868939.1_2652270_2652744_+	NA	NA|311aa|down_1|NZ_LN868939.1_2652743_2653676_+	NA	NA|56aa|down_2|NZ_LN868939.1_2653672_2653840_+	NA	NA|142aa|down_3|NZ_LN868939.1_2653836_2654262_+	NA	NA|104aa|down_4|NZ_LN868939.1_2654258_2654570_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|85aa|down_5|NZ_LN868939.1_2654712_2654967_+	pfam14216, DUF4326, Domain of unknown function (DUF4326)	NA|113aa|down_6|NZ_LN868939.1_2655019_2655358_+	NA	NA|59aa|down_7|NZ_LN868939.1_2655505_2655682_-	NA	NA|60aa|down_8|NZ_LN868939.1_2655678_2655858_-	NA	NA|89aa|down_9|NZ_LN868939.1_2655875_2656142_-	pfam08221, HTH_9, RNA polymerase III subunit RPC82 helix-turn-helix domain
GCF_001182745.1_NCTC11134	NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	1	202642-202722	1	CRISPRCasFinder	no		WYL,csa3,cas4,DEDDh,cas3,DinG	Orphan	TCAGCATCGGAGGCACCCTCGGCG	24	0	0	NA	NA	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|184aa|up_9|NZ_LN868938.1_195811_196363_+,NA|151aa|up_8|NZ_LN868938.1_196421_196874_+,NA|201aa|up_7|NZ_LN868938.1_196870_197473_+,NA|132aa|up_6|NZ_LN868938.1_197896_198292_-,NA|235aa|up_5|NZ_LN868938.1_198301_199006_-,NA|132aa|up_4|NZ_LN868938.1_199002_199398_-,NA|168aa|up_3|NZ_LN868938.1_199413_199917_-,NA|261aa|up_2|NZ_LN868938.1_199926_200709_-,NA|373aa|up_1|NZ_LN868938.1_200711_201830_-,NA|73aa|down_2|NZ_LN868938.1_206111_206330_-,NA|108aa|down_3|NZ_LN868938.1_206328_206652_+,NA|57aa|down_4|NZ_LN868938.1_206729_206900_-,NA|82aa|down_5|NZ_LN868938.1_206937_207183_-,NA|139aa|down_6|NZ_LN868938.1_207294_207711_+,NA|55aa|down_7|NZ_LN868938.1_207769_207934_+,NA|81aa|down_8|NZ_LN868938.1_208055_208298_+	NA|184aa|up_9|NZ_LN868938.1_195811_196363_+	NA	NA|151aa|up_8|NZ_LN868938.1_196421_196874_+	NA	NA|201aa|up_7|NZ_LN868938.1_196870_197473_+	NA	NA|132aa|up_6|NZ_LN868938.1_197896_198292_-	NA	NA|235aa|up_5|NZ_LN868938.1_198301_199006_-	NA	NA|132aa|up_4|NZ_LN868938.1_199002_199398_-	NA	NA|168aa|up_3|NZ_LN868938.1_199413_199917_-	NA	NA|261aa|up_2|NZ_LN868938.1_199926_200709_-	NA	NA|373aa|up_1|NZ_LN868938.1_200711_201830_-	NA	NA|148aa|up_0|NZ_LN868938.1_201921_202365_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|245aa|down_0|NZ_LN868938.1_203060_203795_-	pfam08635, ox_reductase_C, Putative oxidoreductase C terminal	NA|680aa|down_1|NZ_LN868938.1_203910_205950_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|73aa|down_2|NZ_LN868938.1_206111_206330_-	NA	NA|108aa|down_3|NZ_LN868938.1_206328_206652_+	NA	NA|57aa|down_4|NZ_LN868938.1_206729_206900_-	NA	NA|82aa|down_5|NZ_LN868938.1_206937_207183_-	NA	NA|139aa|down_6|NZ_LN868938.1_207294_207711_+	NA	NA|55aa|down_7|NZ_LN868938.1_207769_207934_+	NA	NA|81aa|down_8|NZ_LN868938.1_208055_208298_+	NA	NA|270aa|down_9|NZ_LN868938.1_208290_209100_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family
GCF_001182745.1_NCTC11134	NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	2	302587-302690	2	CRISPRCasFinder	no	csa3,WYL	WYL,csa3,cas4,DEDDh,cas3,DinG	Type I-A	CGGCAGGCCGTCCCGCTCAGGCGCAG	26	0	0	NA	NA	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|687aa|up_9|NZ_LN868938.1_292440_294501_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|191aa|up_8|NZ_LN868938.1_294501_295074_+	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three  branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases	NA|222aa|up_7|NZ_LN868938.1_295074_295740_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|320aa|up_6|NZ_LN868938.1_295765_296725_+	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|375aa|up_5|NZ_LN868938.1_296721_297846_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|348aa|up_4|NZ_LN868938.1_297845_298889_+	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|307aa|up_3|NZ_LN868938.1_299286_300207_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|273aa|up_2|NZ_LN868938.1_300257_301076_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|232aa|up_1|NZ_LN868938.1_301123_301819_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|251aa|up_0|NZ_LN868938.1_301832_302585_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|169aa|down_0|NZ_LN868938.1_302743_303250_-	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|121aa|down_1|NZ_LN868938.1_303246_303609_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|168aa|down_2|NZ_LN868938.1_303678_304182_+	PRK00431, PRK00431, ADP-ribose-binding protein	NA|150aa|down_3|NZ_LN868938.1_304178_304628_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	WYL|323aa|down_4|NZ_LN868938.1_304722_305691_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|down_5|NZ_LN868938.1_305768_306338_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|202aa|down_6|NZ_LN868938.1_306334_306940_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|358aa|down_7|NZ_LN868938.1_306946_308020_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|172aa|down_8|NZ_LN868938.1_308067_308583_+	pfam04138, GtrA, GtrA-like protein	NA|188aa|down_9|NZ_LN868938.1_308588_309152_-	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein
GCF_001182745.1_NCTC11134	NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	3	3063492-3063598	3	CRISPRCasFinder	no		WYL,csa3,cas4,DEDDh,cas3,DinG	Orphan	TCACCACGCAGGCCGCCCCGCACAGGCGAA	30	1	3	3063522-3063568|3063522-3063568|3063522-3063568	NZ_LN868938.1_3021434-3021480|NZ_LN868938.1_3021512-3021558|NZ_LN868938.1_3287917-3287963	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|142aa|up_6|NZ_LN868938.1_3057962_3058388_+,NA|84aa|up_3|NZ_LN868938.1_3060684_3060936_-,NA|157aa|up_0|NZ_LN868938.1_3062989_3063460_+,NA|239aa|down_3|NZ_LN868938.1_3068217_3068934_-,NA|52aa|down_7|NZ_LN868938.1_3071739_3071895_-,NA|138aa|down_8|NZ_LN868938.1_3071940_3072354_-	NA|65aa|up_9|NZ_LN868938.1_3055367_3055562_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|503aa|up_8|NZ_LN868938.1_3055558_3057067_-	pfam00067, p450, Cytochrome P450	NA|216aa|up_7|NZ_LN868938.1_3057129_3057777_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_6|NZ_LN868938.1_3057962_3058388_+	NA	NA|426aa|up_5|NZ_LN868938.1_3058391_3059669_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|up_4|NZ_LN868938.1_3059698_3060508_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|84aa|up_3|NZ_LN868938.1_3060684_3060936_-	NA	NA|300aa|up_2|NZ_LN868938.1_3060945_3061845_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|347aa|up_1|NZ_LN868938.1_3061893_3062934_+	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|157aa|up_0|NZ_LN868938.1_3062989_3063460_+	NA	NA|658aa|down_0|NZ_LN868938.1_3063740_3065714_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|503aa|down_1|NZ_LN868938.1_3065611_3067120_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|339aa|down_2|NZ_LN868938.1_3067191_3068208_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|239aa|down_3|NZ_LN868938.1_3068217_3068934_-	NA	NA|314aa|down_4|NZ_LN868938.1_3069142_3070084_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|241aa|down_5|NZ_LN868938.1_3070110_3070833_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|228aa|down_6|NZ_LN868938.1_3070967_3071651_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|52aa|down_7|NZ_LN868938.1_3071739_3071895_-	NA	NA|138aa|down_8|NZ_LN868938.1_3071940_3072354_-	NA	NA|342aa|down_9|NZ_LN868938.1_3072491_3073517_-	pfam04235, DUF418, Protein of unknown function (DUF418)
GCF_001182745.1_NCTC11134	NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	4	3253219-3253322	4	CRISPRCasFinder	no		WYL,csa3,cas4,DEDDh,cas3,DinG	Orphan	GTGGTGACACCCGGCTGGGTCGGCGT	26	0	0	NA	NA	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|59aa|up_5|NZ_LN868938.1_3245466_3245643_+,NA	NA|124aa|up_9|NZ_LN868938.1_3236685_3237057_+	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|652aa|up_8|NZ_LN868938.1_3237149_3239105_-	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|260aa|up_7|NZ_LN868938.1_3239220_3240000_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_6|NZ_LN868938.1_3244818_3245361_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|59aa|up_5|NZ_LN868938.1_3245466_3245643_+	NA	NA|191aa|up_4|NZ_LN868938.1_3245722_3246295_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|578aa|up_3|NZ_LN868938.1_3246298_3248032_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|500aa|up_2|NZ_LN868938.1_3248375_3249875_+	cd07789, FGGY_CsGK_like, Cellulomonas sp	NA|394aa|up_1|NZ_LN868938.1_3250039_3251221_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|375aa|up_0|NZ_LN868938.1_3251309_3252434_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|470aa|down_0|NZ_LN868938.1_3253904_3255314_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|160aa|down_1|NZ_LN868938.1_3255473_3255953_+	pfam13772, AIG2_2, AIG2-like family	NA|390aa|down_2|NZ_LN868938.1_3256008_3257178_-	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|394aa|down_3|NZ_LN868938.1_3257333_3258515_-	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|235aa|down_4|NZ_LN868938.1_3258647_3259352_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|268aa|down_5|NZ_LN868938.1_3259442_3260246_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|498aa|down_6|NZ_LN868938.1_3260319_3261813_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|208aa|down_7|NZ_LN868938.1_3261892_3262516_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|106aa|down_8|NZ_LN868938.1_3262661_3262979_+	PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional	NA|375aa|down_9|NZ_LN868938.1_3262983_3264108_+	pfam00877, NLPC_P60, NlpC/P60 family
GCF_001182745.1_NCTC11134	NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	5	3605196-3605302	5	CRISPRCasFinder	no		WYL,csa3,cas4,DEDDh,cas3,DinG	Orphan	CGCCTGAGCGGGTCAGCGGCCGGAGGCGG	29	1	1	3605225-3605273	NZ_LN868938.1_3063559-3063607	N:A	1	1	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|455aa|up_5|NZ_LN868938.1_3596671_3598036_+,NA|338aa|up_4|NZ_LN868938.1_3598336_3599350_+,NA|477aa|up_3|NZ_LN868938.1_3599372_3600803_+,NA|64aa|up_1|NZ_LN868938.1_3602417_3602609_-,NA|222aa|down_2|NZ_LN868938.1_3607031_3607697_+,NA|217aa|down_5|NZ_LN868938.1_3611096_3611747_+	NA|546aa|up_9|NZ_LN868938.1_3590085_3591723_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|187aa|up_8|NZ_LN868938.1_3592275_3592836_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|374aa|up_7|NZ_LN868938.1_3592878_3594000_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|232aa|up_6|NZ_LN868938.1_3595781_3596477_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|455aa|up_5|NZ_LN868938.1_3596671_3598036_+	NA	NA|338aa|up_4|NZ_LN868938.1_3598336_3599350_+	NA	NA|477aa|up_3|NZ_LN868938.1_3599372_3600803_+	NA	NA|402aa|up_2|NZ_LN868938.1_3600888_3602094_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|64aa|up_1|NZ_LN868938.1_3602417_3602609_-	NA	NA|487aa|up_0|NZ_LN868938.1_3602713_3604174_+	cd00615, Orn_deC_like, Ornithine decarboxylase family	NA|261aa|down_0|NZ_LN868938.1_3605333_3606116_+	cd02869, PseudoU_synth_RluA_like, Pseudouridine synthase, RluA family	NA|260aa|down_1|NZ_LN868938.1_3606209_3606989_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|222aa|down_2|NZ_LN868938.1_3607031_3607697_+	NA	NA|716aa|down_3|NZ_LN868938.1_3607754_3609902_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|246aa|down_4|NZ_LN868938.1_3609898_3610636_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|217aa|down_5|NZ_LN868938.1_3611096_3611747_+	NA	NA|75aa|down_6|NZ_LN868938.1_3611854_3612079_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|808aa|down_7|NZ_LN868938.1_3612139_3614563_-	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|71aa|down_8|NZ_LN868938.1_3614618_3614831_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|381aa|down_9|NZ_LN868938.1_3614908_3616051_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain
GCF_001182745.1_NCTC11134	NZ_LN868940	Nocardia farcinica strain NCTC11134 plasmid 3, complete sequence	1	13835-14271	1	CRT	no			Orphan	ACCTGGTCCCCCACCTGG	18	5	10	14008-14037|14008-14037|14056-14073|14056-14073|14092-14121|14092-14121|14140-14157|14140-14157|14176-14205|14176-14205	NZ_LN868940.1_13829-13858|NZ_LN868939.1_2651604-2651575|NZ_LN868940.1_13829-13846|NZ_LN868939.1_2651604-2651587|NZ_LN868940.1_13829-13858|NZ_LN868939.1_2651604-2651575|NZ_LN868940.1_13829-13846|NZ_LN868939.1_2651604-2651587|NZ_LN868940.1_13829-13858|NZ_LN868939.1_2651604-2651575	N:A	8	8	Orphan	WYL,csa3,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|114aa|up_9|NZ_LN868940.1_8685_9027_-,NA|60aa|up_7|NZ_LN868940.1_9577_9757_+,NA|90aa|up_6|NZ_LN868940.1_9753_10023_+,NA|113aa|up_5|NZ_LN868940.1_10076_10415_-,NA|142aa|up_2|NZ_LN868940.1_11172_11598_-,NA|365aa|up_1|NZ_LN868940.1_11594_12689_-,NA|158aa|up_0|NZ_LN868940.1_12688_13162_-,NA|128aa|down_0|NZ_LN868940.1_14615_14999_-	NA|114aa|up_9|NZ_LN868940.1_8685_9027_-	NA	NA|89aa|up_8|NZ_LN868940.1_9293_9560_+	pfam08221, HTH_9, RNA polymerase III subunit RPC82 helix-turn-helix domain	NA|60aa|up_7|NZ_LN868940.1_9577_9757_+	NA	NA|90aa|up_6|NZ_LN868940.1_9753_10023_+	NA	NA|113aa|up_5|NZ_LN868940.1_10076_10415_-	NA	NA|85aa|up_4|NZ_LN868940.1_10467_10722_-	pfam14216, DUF4326, Domain of unknown function (DUF4326)	NA|104aa|up_3|NZ_LN868940.1_10864_11176_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|142aa|up_2|NZ_LN868940.1_11172_11598_-	NA	NA|365aa|up_1|NZ_LN868940.1_11594_12689_-	NA	NA|158aa|up_0|NZ_LN868940.1_12688_13162_-	NA	NA|128aa|down_0|NZ_LN868940.1_14615_14999_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
