The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	3648762	179234	195556	3648762		Mycobacterium_phage(58.33%)	18	NA	NA
WP_159005655.1|179234_180203_-	hypothetical protein	NA	A0A142K5B3	Mycobacterium_phage	52.7	7.7e-32
WP_107103074.1|180413_180821_+	AlpA family phage regulatory protein	NA	A0A222ZEP8	Arthrobacter_phage	64.9	5.8e-13
WP_139337560.1|180836_181019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589834.1|181105_181780_-	hypothetical protein	NA	A0A1B2IHM3	Mycobacterium_phage	41.7	8.1e-12
WP_060589835.1|181875_182136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139337561.1|182144_182735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139337562.1|182819_183203_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_060589840.1|183216_183825_-	hypothetical protein	NA	G8I9F4	Mycobacterium_phage	33.3	2.1e-06
WP_060589842.1|183821_184409_-	hypothetical protein	NA	F1B2R1	Tsukamurella_phage	45.0	1.9e-41
WP_060589844.1|184405_185026_-	hypothetical protein	NA	A0A0F6WEA4	Mycobacterium_phage	42.3	2.1e-35
WP_060589845.1|185022_185688_-	hypothetical protein	NA	A0A0N7CD65	Skermania_phage	36.6	2.6e-18
WP_060589847.1|185684_186692_-	hypothetical protein	NA	A0A0N7CDI2	Skermania_phage	41.5	7.7e-59
WP_060589849.1|186688_187939_-	hypothetical protein	NA	A0A0F7ILA1	Mycobacterium_phage	36.2	1.4e-81
WP_062954255.1|187949_193643_-	hypothetical protein	NA	D4P802	Rhodococcus_phage	41.5	7.3e-138
WP_060589853.1|193679_194084_-	HK97 gp10 family phage protein	NA	G8I4M9	Mycobacterium_phage	44.8	6.1e-15
WP_139337563.1|194086_194335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589856.1|194346_194898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593226.1|194902_195556_-	hypothetical protein	NA	A0A0K1LSS1	Mycobacterium_phage	51.0	1.2e-49
>prophage 2
NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	3648762	200711	207183	3648762	capsid	Mycobacterium_phage(33.33%)	10	NA	NA
WP_076573989.1|200711_201830_-	hypothetical protein	NA	A0A2R4AN79	Mycobacterium_phage	42.4	1.0e-67
WP_060589873.1|201921_202365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589876.1|202369_202648_-	hypothetical protein	NA	A0A1P8D5V5	Corynebacterium_phage	43.2	3.9e-05
WP_060589878.1|202637_203057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589879.1|203060_203795_-	hypothetical protein	NA	F1B2P3	Tsukamurella_phage	36.7	1.0e-23
WP_060589881.1|203910_205950_-|capsid	major capsid protein	capsid	A0A1J0ME53	Mycobacterium_phage	40.1	4.1e-83
WP_060589883.1|206111_206330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589884.1|206328_206652_+	hypothetical protein	NA	G9FGX7	Rhodococcus_phage	47.5	1.1e-22
WP_159005653.1|206729_206900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589886.1|206937_207183_-	hypothetical protein	NA	A0A160DCL6	Gordonia_phage	61.0	1.1e-22
>prophage 3
NZ_LN868938	Nocardia farcinica strain NCTC11134 chromosome 1	3648762	228868	237126	3648762	integrase	Mycobacterium_phage(50.0%)	13	232359:232373	243050:243064
WP_060589949.1|228868_229627_-	helix-turn-helix domain-containing protein	NA	G9FH02	Rhodococcus_phage	37.8	3.1e-36
WP_060589951.1|229623_230118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060589953.1|230138_231164_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_060589955.1|231271_232087_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_060589957.1|232080_232446_-	hypothetical protein	NA	A0A0K2FMZ9	Mycobacterium_phage	47.2	8.8e-21
232359:232373	attL	CGGTCACCGACTTGG	NA	NA	NA	NA
WP_082668701.1|232438_233041_-	ERF family protein	NA	A0A222ZRH0	Mycobacterium_phage	50.5	7.7e-38
WP_060589961.1|233111_233654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174520480.1|233668_234379_-	hypothetical protein	NA	A0A2H4J9U6	uncultured_Caudovirales_phage	60.9	8.6e-73
WP_060589962.1|234375_234609_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_076573859.1|234598_234850_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9W2	uncultured_Caudovirales_phage	42.9	3.2e-06
WP_082668546.1|235014_235293_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162492695.1|235203_235452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062954205.1|235746_237126_-|integrase	site-specific integrase	integrase	A0A2R4AQU2	Mycobacterium_phage	42.2	1.6e-78
243050:243064	attR	CGGTCACCGACTTGG	NA	NA	NA	NA
>prophage 1
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	8095	30019	2657929		Mycobacterium_phage(47.83%)	35	NA	NA
WP_060593549.1|8095_9352_-	hypothetical protein	NA	A0A2D1GH07	Mycobacterium_phage	49.0	1.7e-116
WP_139337593.1|9434_10031_-	hypothetical protein	NA	A0A0M4QVT7	Mycobacterium_phage	48.5	5.8e-46
WP_159005673.1|10635_10806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076574150.1|10816_11179_-	cell division protein DedD	NA	A0A222ZJE7	Rhodococcus_phage	71.4	1.1e-47
WP_139337592.1|11175_11355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139337591.1|11381_11609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593550.1|11613_13419_-	DNA polymerase	NA	A0A222YXX9	Mycobacterium_phage	58.0	1.6e-192
WP_159005675.1|13419_13575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159005677.1|13580_13745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593551.1|13748_14048_-	hypothetical protein	NA	A0A1I9S7V3	Rhodococcus_phage	43.0	2.6e-07
WP_082668736.1|14068_14917_-	FAD-dependent thymidylate synthase	NA	A0A2R4A2F6	Mycobacterium_phage	75.1	5.1e-96
WP_076574148.1|15303_15837_-	hypothetical protein	NA	A0A249XU19	Mycobacterium_phage	56.5	3.4e-13
WP_076574146.1|16160_16574_-	DUF2493 domain-containing protein	NA	H6U5L8	Mycobacterium_phage	48.1	1.1e-22
WP_060593554.1|16591_16849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593555.1|16858_18904_-	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	NA	G8IRC5	Mycobacterium_virus	67.2	7.1e-269
WP_060593556.1|18914_19109_-	hypothetical protein	NA	I6R128	Nonlabens_phage	66.7	5.7e-11
WP_159005679.1|19110_19272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139337590.1|19272_19905_-	hypothetical protein	NA	G8IRD0	Mycobacterium_virus	29.6	1.2e-09
WP_060593558.1|20006_20777_-	metallophosphoesterase	NA	H9NCP5	Mycobacterium_phage	68.2	1.9e-105
WP_082668738.1|21145_21580_-	DUF3310 domain-containing protein	NA	A0A0R6PIJ4	Moraxella_phage	55.9	1.0e-12
WP_060593559.1|21711_21975_-	NrdH-redoxin	NA	Q5K5J3	Oenococcus_phage	36.0	9.8e-06
WP_060593560.1|21980_22340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139337588.1|22340_22736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076574142.1|22732_23422_-	toprim domain-containing protein	NA	A0A223FZN0	Rhodococcus_phage	54.6	2.1e-68
WP_060593561.1|23862_24339_-	endonuclease VII domain-containing protein	NA	A0A220NQC3	Rhodococcus_phage	69.4	1.8e-50
WP_060593562.1|24301_25147_-	AAA family ATPase	NA	S5MRW0	Mycobacterium_phage	67.0	1.3e-99
WP_060593563.1|25149_25518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593564.1|25514_25868_-	hypothetical protein	NA	A0A160DER0	Gordonia_phage	57.4	5.7e-09
WP_060593565.1|25867_26224_-	hypothetical protein	NA	A0A160DHP2	Gordonia_phage	43.2	1.9e-12
WP_060593566.1|26227_26995_-	hypothetical protein	NA	A0A160DF66	Gordonia_phage	66.9	5.1e-95
WP_060593567.1|26991_27300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593568.1|27516_27801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060593569.1|27803_28346_-	phosphoribosyltransferase	NA	U5P0D3	Mycobacterium_phage	50.0	6.7e-25
WP_060595020.1|28436_29225_-	PD-(D/E)XK nuclease family protein	NA	A0A1B1SED3	Mycobacterium_phage	68.2	2.9e-101
WP_076574140.1|29515_30019_-	hypothetical protein	NA	Q9G045	Mycobacterium_phage	51.2	8.1e-41
>prophage 2
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	39982	58990	2657929	capsid,head,portal	Gordonia_phage(26.67%)	20	NA	NA
WP_098701579.1|39982_40312_+	HNH endonuclease	NA	I6X3F8	Mycobacterium_virus	40.3	3.2e-06
WP_076574168.1|40465_40717_+	hypothetical protein	NA	A0A0U4JLP2	Arthrobacter_phage	53.8	1.5e-11
WP_139337602.1|40787_41111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159033819.1|41606_41861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076574166.1|41790_43278_+	hypothetical protein	NA	A0A0H4IRX9	Propionibacterium_phage	34.1	1.3e-62
WP_076574164.1|43298_44759_+|portal	phage portal protein	portal	A0A159B6N0	Tsukamurella_phage	54.3	1.9e-130
WP_139337601.1|44739_45447_+	hypothetical protein	NA	A0A2P1A0Q1	Gordonia_phage	34.0	5.8e-29
WP_082668743.1|45511_46105_+	hypothetical protein	NA	G1D4C0	Mycobacterium_virus	31.7	1.5e-09
WP_060593585.1|46131_46533_+|head	head decoration protein	head	A0A162E0Z2	Gordonia_phage	54.4	2.1e-31
WP_159005667.1|46572_47586_+|capsid	major capsid protein	capsid	A0A159B6B2	Gordonia_phage	53.0	4.4e-94
WP_139337600.1|47648_47900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139337599.1|48268_48604_+	hypothetical protein	NA	A0A2H4J5S1	uncultured_Caudovirales_phage	54.5	6.0e-24
WP_159005665.1|48606_48777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139337598.1|49028_49439_+	hypothetical protein	NA	A0A0K1Y5W8	Streptomyces_phage	38.5	6.2e-07
WP_060593588.1|49480_50077_+	hypothetical protein	NA	A0A2H4PEW8	Gordonia_phage	35.6	1.8e-23
WP_060593589.1|50195_50516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060593590.1|50927_55811_+	tape measure protein	NA	A0A2H4JDP5	uncultured_Caudovirales_phage	31.3	4.6e-173
WP_076574154.1|55814_56747_+	hypothetical protein	NA	G9FH96	Rhodococcus_phage	42.1	1.5e-53
WP_060593592.1|56755_58423_+	hypothetical protein	NA	G9FH97	Rhodococcus_phage	56.1	7.7e-181
WP_076574152.1|58423_58990_+	DUF2744 domain-containing protein	NA	G9FH98	Rhodococcus_phage	40.8	2.3e-28
>prophage 3
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	313707	323852	2657929	tRNA,protease	Staphylococcus_phage(16.67%)	10	NA	NA
WP_060595038.1|313707_314607_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.4	4.8e-36
WP_060593737.1|314717_315923_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_060593738.1|315919_316582_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_060595039.1|316697_317021_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	O64357	Escherichia_phage	30.5	7.8e-05
WP_011206945.1|317017_317329_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	47.6	3.4e-13
WP_011206944.1|317398_319954_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.8	1.6e-132
WP_060593739.1|320353_320902_-	DUF1772 domain-containing protein	NA	NA	NA	NA	NA
WP_011206942.1|321102_321726_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_011206941.1|321910_322273_-	Lsr2 family protein	NA	A0A286MQE5	Mycobacterium_phage	40.0	1.3e-11
WP_060593740.1|322385_323852_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	34.1	2.2e-70
>prophage 4
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	2580109	2585698	2657929		Gordonia_phage(50.0%)	9	NA	NA
WP_060594919.1|2580109_2580622_+	adenine methyltransferase	NA	A0A166Y0E3	Gordonia_phage	67.5	1.1e-56
WP_060594920.1|2580618_2580876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594921.1|2581028_2582015_+	DNA cytosine methyltransferase	NA	A0A088FRI5	Mycobacterium_phage	55.5	1.7e-87
WP_139337612.1|2582173_2583109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594923.1|2583440_2584187_+	hypothetical protein	NA	A0A160DG51	Gordonia_phage	33.2	3.4e-19
WP_060594924.1|2584183_2584423_+	hypothetical protein	NA	A0A2D1AE59	Rhodococcus_phage	58.0	1.8e-06
WP_060594925.1|2584434_2584794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060595200.1|2584829_2585087_+	hypothetical protein	NA	A0A1S5VY78	Rhodococcus_phage	57.3	1.6e-16
WP_082668833.1|2585143_2585698_+	HNH endonuclease	NA	A0A2H4PF11	Gordonia_phage	34.2	9.2e-22
>prophage 5
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	2605293	2627130	2657929	tRNA,transposase,portal,terminase	Streptomyces_phage(18.75%)	30	NA	NA
WP_060594963.1|2605293_2606061_+	metallophosphoesterase	NA	A0A2D0ZMA7	Rhodococcus_phage	40.6	1.6e-43
WP_060594964.1|2606105_2606669_+	hypothetical protein	NA	A0A068F1Q8	Mycobacterium_phage	51.2	4.6e-37
WP_060594965.1|2606672_2606954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594966.1|2608065_2608659_+	hypothetical protein	NA	A0A142EZY1	Stenotrophomonas_phage	59.6	3.1e-07
WP_060594967.1|2608658_2609477_+	methyltransferase	NA	A0A0F6YNR1	Sinorhizobium_phage	50.2	3.8e-64
WP_060594968.1|2609473_2609734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594969.1|2609730_2610414_+|tRNA	tRNA(His) guanylyltransferase Thg1 family protein	tRNA	A0A2D1GDS2	Mycobacterium_phage	64.9	1.1e-77
WP_060594970.1|2610507_2611896_+|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	28.4	1.1e-52
WP_060594971.1|2612916_2613138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594972.1|2613153_2613636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_098087181.1|2613765_2614927_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.9	3.0e-30
WP_060594973.1|2614952_2615219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060594974.1|2615546_2616530_+	PE-PPE domain-containing protein	NA	NA	NA	NA	NA
WP_157838415.1|2616526_2616694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594975.1|2616693_2616936_+	glutaredoxin family protein	NA	A0A2H4J2C2	uncultured_Caudovirales_phage	47.8	6.0e-10
WP_060594976.1|2616932_2617172_+	hypothetical protein	NA	M9MUD8	Rhodococcus_phage	59.0	3.5e-18
WP_060594977.1|2617186_2617408_+	hypothetical protein	NA	G1BSE0	Mycobacterium_virus	54.7	5.7e-07
WP_011210472.1|2617391_2617670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159005536.1|2617685_2617844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594978.1|2617845_2618088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159033828.1|2618056_2618287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060594979.1|2618412_2618895_+	helix-turn-helix domain-containing protein	NA	A0A1B1IPF6	uncultured_Mediterranean_phage	33.7	8.9e-05
WP_060595201.1|2618918_2620184_+|terminase	PBSX family phage terminase large subunit	terminase	A0A1J0MC69	Streptomyces_phage	48.7	2.1e-109
WP_139337619.1|2620245_2620440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060594980.1|2620484_2621606_+	hypothetical protein	NA	A0A2H4J2C7	uncultured_Caudovirales_phage	60.3	6.7e-120
WP_060594981.1|2621679_2623224_+|portal	phage portal protein	portal	A0A1J0MBZ7	Streptomyces_phage	39.3	5.3e-91
WP_060594982.1|2623248_2625021_+	hypothetical protein	NA	A0A159B6H5	Gordonia_phage	30.8	1.0e-34
WP_060594983.1|2625017_2625302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139337620.1|2625449_2626190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060594985.1|2626209_2627130_+	hypothetical protein	NA	A0A2H5BLD0	Streptomyces_phage	33.8	2.3e-25
>prophage 6
NZ_LN868939	Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence	2657929	2636375	2644876	2657929		Mycobacterium_phage(33.33%)	6	NA	NA
WP_082668867.1|2636375_2639756_+	transglycosylase SLT domain-containing protein	NA	A0A160DHQ8	Gordonia_phage	38.4	9.5e-85
WP_098701638.1|2639764_2640691_+	hypothetical protein	NA	G8I4D0	Mycobacterium_phage	37.9	1.6e-50
WP_076574225.1|2640687_2642415_+	hypothetical protein	NA	A0A220NQQ5	Corynebacterium_phage	40.2	2.5e-110
WP_076574219.1|2642424_2643069_-	HNH endonuclease	NA	A0A2H4P8N1	Corynebacterium_phage	42.1	1.8e-24
WP_076574221.1|2643095_2643806_+	DUF2744 domain-containing protein	NA	A0A2D1G9P8	Mycobacterium_phage	47.8	1.3e-23
WP_060595002.1|2643805_2644876_+	N-acetylmuramoyl-L-alanine amidase	NA	F1B2S6	Tsukamurella_phage	60.6	9.2e-111
