The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	0	26269	4765548	tail,terminase,plate,capsid,head,lysis,portal,integrase	Salmonella_phage(83.87%)	36	4165:4179	30994:31008
WP_094516709.1|0_1055_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	79.5	8.1e-152
WP_001086816.1|1051_1657_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|1649_2558_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|2544_2904_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|2900_3479_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|3547_3994_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|3986_4418_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
4165:4179	attL	AACGCCGGGTTATTG	NA	NA	NA	NA
WP_001080928.1|4513_4942_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|4938_5316_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001341072.1|5317_5791_-	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
WP_000171568.1|5810_6026_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|6029_6233_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|6232_6697_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|6792_7443_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|7446_8505_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216244.1|8521_9355_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|9497_11264_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|11263_12301_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|12335_13076_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|13072_13987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|14600_15479_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|15587_15887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|15954_16143_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|16296_18711_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|18707_19565_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|19561_19789_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|19788_20022_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|20089_20431_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|20548_20845_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|20852_21362_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|21394_21616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|21741_22311_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|22326_22518_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|22706_23759_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|24384_24483_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|24622_26269_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
30994:31008	attR	CAATAACCCGGCGTT	NA	NA	NA	NA
>prophage 2
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	294572	388231	4765548	plate,tail,terminase,capsid,head,lysis,portal,integrase	Salmonella_phage(81.63%)	105	295745:295761	393461:393477
WP_000089603.1|294572_295724_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
295745:295761	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|295820_296288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|296499_297375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|297562_297925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|297881_298796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|298814_299555_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|299533_300220_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|300255_300756_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|300765_301335_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|301354_303445_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|303441_304200_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_001686573.1|304418_304691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|304690_304930_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|304959_305322_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|305331_305706_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|305702_306356_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|306355_307255_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|307244_308723_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989290.1|308715_309159_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|312148_312535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|312689_313082_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|313078_314047_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|314061_315492_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|315824_317330_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000993574.1|317365_317755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|317978_318221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|318625_319873_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_010989294.1|319884_320499_+	ParB-like nuclease domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	8.3e-56
WP_010989295.1|320709_321252_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|322517_323438_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_001020123.1|324161_324464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|324559_324940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|325310_325520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|325537_325990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|325986_326283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|326360_326819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|326907_328857_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|328928_329837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022216.1|329910_330810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989298.1|330851_331211_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|331310_331580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|331711_332986_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|333205_333583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|333669_333888_-	positive regulator of late gene transcription	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|333955_335056_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|335052_335538_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001282813.1|335537_338318_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000763315.1|338310_338430_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|338444_338747_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|338801_339317_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|339326_340499_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|340601_340820_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|341033_341756_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|341953_342361_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|342367_343987_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|343983_344589_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|344581_345490_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|345476_345836_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|345832_346411_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|346479_346926_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|346918_347350_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_001772475.1|347445_347871_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
WP_000731034.1|347870_348248_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|348252_348762_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|348742_348958_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|348961_349165_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|349164_349629_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|349722_350373_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|350376_351441_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|351457_352291_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|352433_354200_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|354199_355243_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|355291_355987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|356006_357071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|357067_358132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|358141_358360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|358455_358689_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|358700_358889_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000104130.1|361442_362303_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|362299_362884_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|362880_363108_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|363107_363341_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|363408_363750_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|363713_363914_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|363921_364431_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|364463_364706_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|364822_365455_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|365458_366484_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000902197.1|366590_366944_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
WP_001681810.1|367590_367848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681808.1|367858_368749_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000354257.1|368748_369495_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|369796_371767_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|371786_373091_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|373113_373809_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|373834_374629_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|374638_375706_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|375750_377487_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|377486_379982_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|380005_381052_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|381054_382332_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|382576_383116_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|383969_385481_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|385464_387054_+	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|387217_388231_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
393461:393477	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 3
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	540406	550171	4765548	capsid,integrase	Enterobacteria_phage(50.0%)	10	530941:530954	544072:544085
530941:530954	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|540406_541897_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|542367_543633_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|543695_544772_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
544072:544085	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_010989310.1|544768_545842_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
WP_000493739.1|545816_546980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|547255_547822_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|547837_548077_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_010989311.1|548080_548941_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000556589.1|549363_549687_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
WP_015701354.1|549619_550171_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
>prophage 4
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	1207934	1213965	4765548		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|1207934_1208081_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|1208096_1208240_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|1209229_1211152_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|1211168_1211423_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|1211391_1211781_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|1213023_1213965_-	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 5
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	1448474	1457645	4765548	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1448474_1449422_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|1449405_1450137_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1450117_1450225_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|1450284_1451016_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272853.1|1451238_1452924_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_000598632.1|1452920_1453640_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1453686_1454154_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1454210_1454741_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1454912_1455371_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|1455611_1457645_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 6
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	1533536	1544043	4765548		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|1533536_1534940_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|1535117_1536011_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1536387_1537473_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|1537472_1538372_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|1538419_1539298_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|1539298_1539850_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|1539855_1540830_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1540845_1541619_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|1541623_1542703_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|1542729_1544043_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	1650343	1657577	4765548		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1650343_1650763_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|1650765_1652034_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|1652479_1652692_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|1652702_1652891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|1653151_1654336_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|1654986_1655298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|1655377_1656073_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|1656146_1657577_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 8
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	1861430	1865842	4765548		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|1861430_1861844_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|1861860_1862589_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|1862780_1863323_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1863470_1863848_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|1863920_1864730_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|1865226_1865391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497459.1|1865602_1865842_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
>prophage 9
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	2046879	2120334	4765548	tail,plate,transposase,head,protease,tRNA,integrase	Burkholderia_virus(38.89%)	83	2086347:2086363	2119242:2119258
WP_000168626.1|2046879_2048154_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|2048902_2049508_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|2049612_2051118_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|2051718_2052354_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|2052353_2053046_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|2053048_2053669_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|2053672_2054731_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|2054731_2056753_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|2056745_2057324_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|2057323_2057905_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|2057981_2058422_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|2058510_2058726_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000361450.1|2059024_2059180_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_021013203.1|2059282_2060398_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|2060471_2061473_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_077949083.1|2061839_2062058_-	PTS maltose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000753325.1|2062178_2063687_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|2063789_2064965_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|2065164_2066811_+	fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|2066978_2068382_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|2068378_2069308_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|2069383_2070685_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|2070795_2072502_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|2072654_2073806_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_000924582.1|2073922_2074222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080045.1|2074286_2075018_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|2075144_2075480_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|2075541_2076924_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|2077204_2077777_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_024131175.1|2077848_2078382_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_001802272.1|2078863_2079367_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|2079366_2079984_+|tail	tail assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_000852584.1|2081422_2082001_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2081993_2083097_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2083087_2083435_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2083491_2084019_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_010989167.1|2085158_2085374_-	membrane protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
2086347:2086363	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|2088693_2088831_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|2088775_2089111_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|2089208_2089490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034292.1|2089492_2090014_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
WP_000729859.1|2090013_2091441_-|tail	tail protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_001789770.1|2091430_2091685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|2091681_2092146_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|2092145_2092592_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|2092593_2092932_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|2092941_2093895_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|2093909_2095025_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|2095239_2095698_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|2095700_2096522_-|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|2096502_2097999_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000167502.1|2097998_2099594_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
WP_000124060.1|2099590_2100136_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|2100135_2100447_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|2100446_2100773_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|2100769_2101420_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|2101403_2102132_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|2102134_2102485_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|2102728_2103325_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_124682070.1|2103413_2103752_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.1	1.9e-22
WP_000990529.1|2103929_2105699_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|2105709_2106876_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|2106878_2107148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2107175_2107706_+	host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|2107994_2108267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|2108276_2108579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2108575_2108959_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000132655.1|2108951_2109167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2109163_2109847_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|2109843_2110074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|2110063_2110279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000988475.1|2110268_2110721_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
WP_001281695.1|2110692_2111082_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|2111263_2112208_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|2112734_2114264_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|2114274_2115663_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|2115837_2116872_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_001539987.1|2117006_2117177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000500278.1|2117288_2117651_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|2117637_2117967_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|2118001_2118823_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|2119091_2119343_-	acid shock protein	NA	NA	NA	NA	NA
2119242:2119258	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000502119.1|2119875_2120334_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	2562264	2640464	4765548	tail,terminase,transposase,holin,head,protease,integrase	Salmonella_phage(73.02%)	96	2613564:2613579	2653645:2653660
WP_000938184.1|2562264_2562945_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502119.1|2563152_2563611_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|2564274_2564934_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2565020_2565350_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2565346_2565628_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502119.1|2566364_2566823_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|2567954_2569166_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2569223_2569541_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000975203.1|2569585_2570002_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2570172_2570835_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2570929_2571388_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|2571423_2573478_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|2573601_2574048_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|2574066_2576220_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|2576206_2576812_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2577028_2577538_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|2577892_2578945_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|2579016_2579469_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|2579654_2581415_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2581483_2582002_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|2582101_2582269_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2582522_2583086_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2583082_2584723_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|2584727_2585981_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|2585995_2587903_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|2587915_2590024_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|2590122_2591232_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2591228_2591771_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|2591936_2592947_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|2593154_2595767_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000497443.1|2596192_2596471_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
WP_000480169.1|2596783_2597485_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|2598406_2598925_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|2598939_2600451_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|2600450_2601131_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|2601127_2602327_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|2602327_2602681_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_000564971.1|2602696_2602834_-	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
WP_001685627.1|2602921_2603677_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|2603735_2604164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|2604163_2604895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|2605089_2605425_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|2605421_2606453_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|2606455_2606758_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|2606761_2607412_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|2607411_2609364_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|2609541_2609994_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|2609997_2610438_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|2610449_2611595_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|2611598_2612162_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|2612136_2612526_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|2612512_2613067_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|2613063_2613471_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|2613436_2613805_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
2613564:2613579	attL	TCGGCAATCAGTTTAT	NA	NA	NA	NA
WP_000627464.1|2613846_2614788_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|2614799_2615297_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|2615301_2616534_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|2616548_2617286_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|2617170_2618640_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|2618639_2620043_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|2620008_2620761_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|2620850_2621078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|2621174_2621552_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001075998.1|2622129_2622744_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|2622743_2623025_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|2623011_2623401_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|2623617_2624067_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2624202_2624328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|2624726_2625524_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2625513_2625660_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|2625656_2626268_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|2626476_2627079_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001574100.1|2627118_2627424_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
WP_001217670.1|2627413_2627653_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|2627837_2628335_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|2628345_2628525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989139.1|2628767_2628929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001220318.1|2629010_2629277_-	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
WP_000208074.1|2629370_2629943_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|2629946_2630420_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|2630419_2630944_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|2630940_2631288_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|2631298_2632048_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|2632050_2633034_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|2633118_2633493_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|2633458_2633695_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|2633824_2634229_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|2634517_2634718_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|2634808_2635105_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|2635110_2635896_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|2635892_2636573_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|2636650_2637715_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|2637711_2638593_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|2638598_2638838_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|2638878_2639127_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|2639171_2640464_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
2653645:2653660	attR	ATAAACTGATTGCCGA	NA	NA	NA	NA
>prophage 11
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	2711602	2718914	4765548	protease,integrase	Ralstonia_phage(16.67%)	7	2706471:2706485	2717650:2717664
2706471:2706485	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2711602_2711980_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2712141_2712339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|2712550_2714827_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|2714857_2715178_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2715501_2715723_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|2715852_2717799_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2717650:2717664	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|2717795_2718914_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 12
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	3331571	3418732	4765548	tRNA,plate,tail	Salmonella_phage(40.0%)	66	NA	NA
WP_000118732.1|3331571_3332915_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|3332918_3333455_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|3333521_3334007_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|3334243_3334669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|3334640_3335042_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|3336626_3337169_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|3337232_3337523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|3337608_3340272_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|3340639_3341542_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|3341528_3342353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|3342349_3342844_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|3342859_3344743_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|3344739_3345735_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|3347329_3348061_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|3348124_3348592_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|3348588_3349311_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|3349345_3350101_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3350172_3351540_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|3351595_3352366_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|3352443_3353244_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|3353375_3354551_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|3354655_3355570_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|3355590_3356394_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|3362425_3364999_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3365128_3365860_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3365856_3366837_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3366968_3367706_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3367977_3368316_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3368419_3368467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3368566_3369727_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3369687_3370596_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3370653_3371775_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3371784_3372855_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3373294_3373813_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3373805_3375026_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3375182_3375530_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3375570_3376338_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3376382_3376931_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3376949_3377198_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3377541_3378903_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3379068_3379860_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3379879_3381166_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3381286_3381844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3381925_3382516_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3382639_3383518_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3383603_3385265_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3385413_3385752_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3385917_3386208_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3386197_3386674_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3386823_3387306_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237649.1|3387925_3398800_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|3398863_3400273_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|3400269_3402426_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3402457_3403621_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3404163_3404937_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000972389.1|3405340_3405559_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3405649_3406750_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3406746_3407232_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282793.1|3407228_3410306_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000763311.1|3410298_3410418_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3410432_3410735_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3410789_3411305_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3411314_3412487_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3412629_3413196_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3413879_3414995_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_001111827.1|3415075_3418732_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 13
NZ_LT904881	Salmonella enterica subsp. enterica serovar Typhi strain UI2120 genome assembly, chromosome: 1	4765548	3736171	3779874	4765548	protease,tRNA,transposase,bacteriocin	Bacillus_virus(25.0%)	47	NA	NA
WP_000502119.1|3736171_3736630_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|3736819_3737899_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|3738000_3739164_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|3739185_3740232_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|3740605_3741031_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|3741056_3741635_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|3741635_3742343_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000367758.1|3742324_3743008_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|3743001_3743658_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|3743762_3744221_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|3744409_3746401_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|3746676_3747435_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|3747535_3748456_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|3748683_3750660_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|3750668_3750800_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001803086.1|3751094_3751394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|3751449_3752604_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|3753096_3754491_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_000856775.1|3754569_3755067_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|3755162_3755870_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|3755946_3756678_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|3756697_3757645_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|3757860_3758424_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|3758423_3758840_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|3758886_3759573_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|3759702_3760683_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|3760700_3761405_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|3761423_3761990_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|3761986_3762277_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|3762284_3762878_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|3762870_3764007_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|3764097_3765105_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|3765237_3766284_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|3766602_3767061_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|3767183_3767903_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|3767952_3768279_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|3768278_3768998_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|3769152_3770205_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|3770232_3770508_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|3770620_3771706_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|3771922_3773179_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|3775789_3776497_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|3776838_3777123_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_071525158.1|3777472_3777652_+	type VI secretion system protein	NA	NA	NA	NA	NA
WP_001141622.1|3778772_3779090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000768134.1|3779086_3779353_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|3779595_3779874_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
