The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	739220	775332	4777711	protease,tRNA,bacteriocin,integrase,transposase	Acinetobacter_phage(33.33%)	39	728853:728867	762610:762624
728853:728867	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|739220_739499_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|739741_740008_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|740004_740322_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|741442_741787_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|741971_742256_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|742597_743305_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|745915_747172_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|747388_748474_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|748586_748862_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|748889_749942_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|750096_750816_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|750815_751142_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|751191_751911_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|752033_752492_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|752810_753857_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|753989_754997_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|755087_756224_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|756216_756810_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|756817_757108_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|757104_757671_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|757689_758394_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|758411_759392_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|759521_760208_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|760254_760671_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|760670_761234_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|761449_762397_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|762416_763148_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
762610:762624	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|763224_763932_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|764027_764525_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|764603_765998_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|766490_767645_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|767700_768000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|767996_768161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|768294_768426_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|768434_770411_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|770638_771559_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|771659_772418_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|772693_774685_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|774873_775332_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	1047528	1113553	4777711	tRNA,tail	Salmonella_phage(41.18%)	54	NA	NA
WP_000047238.1|1047528_1050159_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1050393_1050579_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1051843_1052410_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1052406_1052832_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1052908_1054465_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1054614_1055130_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1055475_1056846_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|1056894_1058433_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1058449_1059622_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1059748_1060279_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1060775_1061960_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1062124_1063120_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1063189_1064254_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1065802_1066762_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1066772_1068917_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275406.1|1068889_1069300_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.0	1.6e-15
WP_000028873.1|1069296_1069542_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_050193737.1|1069813_1070245_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1071751_1072078_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1072239_1072590_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1072624_1073074_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1073772_1074174_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|1074522_1075050_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1075059_1075359_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1075541_1075700_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1076270_1076948_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_000531291.1|1076989_1078390_-	GABA permease	NA	NA	NA	NA	NA
WP_001095643.1|1078519_1079803_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1079817_1081266_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1081287_1082556_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|1082581_1083559_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1083861_1085376_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1085386_1085821_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744412.1|1085832_1086810_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1086964_1087639_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1087625_1089041_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1089281_1090187_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1090908_1091805_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1092098_1093028_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1093544_1094597_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|1095618_1097799_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1097858_1098776_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1098807_1100052_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1100161_1103818_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1103898_1105014_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905046.1|1105697_1106264_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1106406_1107579_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_050193766.1|1107588_1108104_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.3	2.8e-89
WP_001280897.1|1108158_1108461_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1108475_1108595_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|1108587_1111665_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980380.1|1111661_1112147_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	79.4	7.0e-66
WP_001011760.1|1112143_1113244_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1113334_1113553_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 3
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	1799907	1807219	4777711	integrase,protease	Dickeya_phage(16.67%)	7	1801158:1801172	1812337:1812351
WP_001201759.1|1799907_1801026_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1801022_1802969_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1801158:1801172	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1803098_1803320_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1803643_1803964_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1803994_1806271_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1806482_1806680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1806841_1807219_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1812337:1812351	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 4
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	1878344	1920403	4777711	terminase,tail,head,plate,holin	Salmonella_phage(77.36%)	60	NA	NA
WP_001262313.1|1878344_1879637_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1879681_1879930_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1879970_1880210_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1880215_1881097_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1881093_1882158_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1882235_1882916_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1882912_1883698_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1883703_1884000_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1884090_1884291_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1884579_1884984_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1885113_1885350_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1885315_1885690_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1885774_1886758_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1886760_1887510_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1887520_1887868_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1887864_1888389_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1888388_1888862_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1888865_1889438_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|1890283_1890463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1890473_1890971_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1891155_1891395_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|1891729_1892332_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1892540_1893152_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1893148_1893295_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1893284_1894082_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1894480_1894606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1894741_1895191_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1895407_1895797_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1895783_1896065_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1896064_1896679_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_001050879.1|1896675_1897215_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_000495544.1|1897257_1897635_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1897731_1897959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118119.1|1898048_1898801_+	hypothetical protein	NA	G8C7P2	Escherichia_phage	60.4	1.5e-11
WP_000204794.1|1898766_1900170_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113509.1|1900169_1901639_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	5.8e-281
WP_138010671.1|1901523_1902261_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1902275_1903508_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1903512_1904010_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1904021_1904963_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1905004_1905373_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1905338_1905746_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1905742_1906297_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1906283_1906673_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1906647_1907211_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1907214_1908360_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389047.1|1908815_1909268_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|1909445_1911398_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|1911397_1912048_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1912051_1912354_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1912356_1913388_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1913384_1913720_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1913914_1914646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1914645_1915074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1915132_1915888_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|1916128_1916482_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1916482_1917682_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1917678_1918359_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1918358_1919870_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421104.1|1919884_1920403_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
>prophage 5
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	2400851	2474360	4777711	protease,tRNA,integrase,tail,plate,capsid,transposase	Burkholderia_virus(36.59%)	86	2391181:2391196	2446966:2446981
2391181:2391196	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000502119.1|2400851_2401310_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2401266_2401449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|2401842_2402094_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2402362_2403184_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2403218_2403548_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2403534_2403897_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|2404313_2405348_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2405522_2406911_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2406921_2408451_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2408977_2409922_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2410103_2410493_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|2410464_2410914_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|2410906_2411122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2411111_2411342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2411338_2412022_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|2412018_2412219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2412226_2412610_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2412606_2412909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2412918_2413191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2413479_2414010_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2414037_2414307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2414309_2415476_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990524.1|2415486_2417256_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	6.2e-229
WP_000567456.1|2417259_2417424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001765083.1|2417433_2417865_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_065304567.1|2417860_2418853_+	nucleoid-associated protein	NA	A0A291AUQ0	Sinorhizobium_phage	37.3	3.0e-55
WP_000793143.1|2419096_2419447_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104432.1|2419449_2420178_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.9	7.0e-62
WP_000264664.1|2420161_2420812_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2420808_2421135_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2421134_2421446_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2421445_2421991_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_170825686.1|2422041_2423583_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000090679.1|2423582_2425079_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117560.1|2425059_2425881_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	1.2e-97
WP_000135517.1|2425883_2426342_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2426556_2427672_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286904.1|2427686_2428640_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	6.8e-65
WP_000537457.1|2428649_2428988_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2428989_2429436_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2429435_2429900_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|2429899_2430151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2430140_2431568_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|2431564_2432089_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|2432091_2432373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2432470_2432806_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2432750_2432888_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2432981_2435447_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2435446_2436331_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|2436330_2436543_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2436530_2437685_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2437681_2438209_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2438265_2438613_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2438603_2439707_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_072075279.1|2440280_2441234_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	52.1	1.5e-59
WP_001802272.1|2441244_2441748_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|2441747_2442365_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_024131174.1|2442371_2442848_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_024131175.1|2442858_2443392_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_001165548.1|2443463_2444036_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2444316_2445699_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2445760_2446096_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|2446222_2446954_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000824322.1|2447434_2448586_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.2	2.4e-117
2446966:2446981	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000928668.1|2448738_2450445_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001681605.1|2450555_2451857_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2451932_2452862_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2452858_2454262_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2454429_2456076_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2456275_2457451_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2457553_2459062_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|2459767_2460769_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|2460842_2461883_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|2462090_2462216_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2462514_2462730_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2462818_2463259_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2463335_2463917_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2463916_2464495_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2464487_2466509_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2466509_2467568_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2467571_2468192_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2468194_2468887_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030326.1|2468886_2469522_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2470122_2471628_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2471731_2472337_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2473085_2474360_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 6
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	2655405	2659817	4777711		Escherichia_phage(50.0%)	6	NA	NA
WP_000497451.1|2655405_2655645_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|2656517_2657327_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2657399_2657777_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2657924_2658467_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2658658_2659387_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2659403_2659817_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 7
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	2863660	2870895	4777711		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2863660_2865091_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2865164_2865860_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2865939_2866251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2866901_2868086_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2868346_2868535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2868545_2868758_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2869204_2870473_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2870475_2870895_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 8
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	2954790	2965297	4777711		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|2954790_2956104_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|2956130_2957210_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|2957214_2957988_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|2958003_2958978_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|2958983_2959535_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|2959535_2960414_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|2960461_2961361_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|2961360_2962446_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|2962822_2963716_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111854.1|2963893_2965297_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.8	4.7e-22
>prophage 9
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	3041189	3050360	4777711	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3041189_3043223_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3043463_3043922_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3044093_3044624_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3044680_3045148_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|3045194_3045914_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001764081.1|3045910_3047596_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	3.4e-277
WP_001240415.1|3047818_3048550_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3048609_3048717_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3048697_3049429_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3049412_3050360_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 10
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	3284869	3290900	4777711		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3284869_3285811_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3287053_3287443_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3287411_3287666_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400610.1|3287682_3289605_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.3	4.3e-300
WP_106417236.1|3290594_3290738_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3290753_3290900_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 11
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	4119265	4218010	4777711	portal,terminase,integrase,tail,head,plate,capsid,lysis	Salmonella_phage(77.08%)	107	4181425:4181442	4225423:4225440
WP_000954536.1|4119265_4120525_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4120835_4122119_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4123099_4123882_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|4124151_4124346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|4124738_4124960_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4124956_4125418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4125964_4127638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989300.1|4127718_4130004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|4130307_4130559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4130640_4131093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|4131272_4131761_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4131757_4132051_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4132477_4133491_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4133654_4135244_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|4135227_4136739_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|4137592_4138132_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4138376_4139654_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4139656_4140703_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|4140726_4143222_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632617.1|4143221_4144958_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4145002_4146070_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4146079_4146874_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4146899_4147595_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4147617_4148922_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|4148941_4150912_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|4151213_4151960_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4151959_4152850_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|4152860_4153118_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|4154224_4155250_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4155253_4155886_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4156002_4156245_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4156277_4156787_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4156794_4156995_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4156958_4157300_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4157367_4157601_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4157600_4157828_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4157824_4158409_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4158405_4159266_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_000301193.1|4159256_4161665_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_001154438.1|4161832_4162021_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4162032_4162266_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4162361_4162580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4162589_4163654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4163650_4164715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4164734_4165430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4165478_4166522_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4166521_4168288_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4168430_4169264_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_050193502.1|4169280_4170345_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	1.3e-194
WP_000059175.1|4170348_4170999_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4171092_4171557_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4171556_4171760_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4171763_4171979_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4171959_4172469_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4172473_4172851_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|4172847_4173276_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039961.1|4173371_4173803_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_000343944.1|4173795_4174242_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4174310_4174889_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4174885_4175245_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268328.1|4175231_4176140_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	99.7	3.5e-159
WP_001086800.1|4176132_4176738_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	99.0	1.3e-117
WP_001274655.1|4176734_4178354_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	91.2	3.2e-155
WP_000006337.1|4178360_4178768_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4178965_4179688_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4179901_4180120_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4180222_4181395_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4181404_4181920_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
4181425:4181442	attL	AAAACACCTGAACCTGTT	NA	NA	NA	NA
WP_001280965.1|4181974_4182277_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4182291_4182411_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_172843066.1|4182637_4185184_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.3	8.9e-112
WP_000457555.1|4185442_4186717_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4186848_4187118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4187217_4187544_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022217.1|4187618_4188518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4188591_4189500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4189571_4191521_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|4191609_4192068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4192145_4192442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4192438_4192891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4192908_4193118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4193488_4193869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|4193964_4194267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907593.1|4194990_4195911_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_010989295.1|4197176_4197719_+	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000502502.1|4197929_4198571_-	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_001283066.1|4198555_4199803_-	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000054770.1|4200046_4200433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000244536.1|4203423_4203873_-	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_001165842.1|4203859_4205338_-	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|4205327_4206227_-	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000086082.1|4206226_4206880_-	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000848326.1|4206876_4207251_-	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000949576.1|4207260_4207623_-	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_001251281.1|4207652_4207892_-	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000252871.1|4207891_4208146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024151068.1|4208382_4209141_-	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000071290.1|4209137_4211228_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_000626967.1|4211247_4211817_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_000253629.1|4211826_4212327_-	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|4212362_4213049_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_001768408.1|4213027_4213768_-	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000214158.1|4213786_4214701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|4214657_4215020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|4215207_4216083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000455463.1|4216294_4216762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000089603.1|4216858_4218010_-|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
4225423:4225440	attR	AACAGGTTCAGGTGTTTT	NA	NA	NA	NA
>prophage 12
NZ_LT904882	Salmonella enterica subsp. enterica serovar Typhi strain SGB89 chromosome 1	4777711	4676603	4739912	4777711	portal,terminase,tRNA,integrase,tail,head,plate,capsid,transposase,lysis	Salmonella_phage(80.49%)	59	4667490:4667507	4748987:4749004
4667490:4667507	attL	AACAGATGTAATGCCGCG	NA	NA	NA	NA
WP_001012560.1|4676603_4678250_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4678389_4678488_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4679113_4680166_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4680354_4680546_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4680561_4681131_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4681256_4681478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4681510_4682020_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4682027_4682324_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4682441_4682783_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4682850_4683084_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4683083_4683311_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4683307_4684165_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000017503.1|4684161_4686576_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4686729_4686918_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4686985_4687285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4687393_4688272_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4688885_4689800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4689796_4690537_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4690571_4691609_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4691608_4693375_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4693517_4694351_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4694367_4695426_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4695429_4696080_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4696175_4696640_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4696639_4696843_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4696846_4697062_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4697042_4697555_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4697556_4697934_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4697930_4698359_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4698454_4698886_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4698878_4699325_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4699393_4699972_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4699968_4700328_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4700314_4701223_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4701215_4701821_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000046142.1|4705471_4706644_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_157716005.1|4706670_4707168_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	93.3	1.7e-83
WP_001280897.1|4707222_4707525_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4707539_4707659_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|4707651_4710729_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980380.1|4710725_4711211_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	79.4	7.0e-66
WP_001011760.1|4711207_4712308_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4712398_4712617_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4714198_4714657_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|4714764_4715103_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|4715209_4716058_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_001131144.1|4722138_4722843_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000224487.1|4724247_4725246_-	ribose operon transcriptional repressor RbsR	NA	NA	NA	NA	NA
WP_000844732.1|4725249_4726179_-	ribokinase	NA	NA	NA	NA	NA
WP_001056260.1|4726311_4727202_-	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA	NA
WP_000211345.1|4727226_4728192_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_000339360.1|4728197_4729703_-	ribose ABC transporter ATP-binding protein RbsA	NA	G3M9Y6	Bacillus_virus	26.8	1.5e-13
WP_000715950.1|4729710_4730130_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000102337.1|4730346_4732215_-	low affinity potassium transporter Kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	5.1e-64
WP_000940993.1|4732562_4734059_+	ATPase RavA	NA	NA	NA	NA	NA
WP_000956591.1|4734052_4735504_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA	NA
WP_000845119.1|4735508_4736501_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.3	5.5e-49
WP_000433016.1|4736651_4737110_+	transcriptional regulator AsnC	NA	NA	NA	NA	NA
WP_000499882.1|4738022_4739912_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
4748987:4749004	attR	CGCGGCATTACATCTGTT	NA	NA	NA	NA
