The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	423	68135	4757695	tRNA,tail,transposase	Salmonella_phage(40.0%)	57	NA	NA
WP_001207656.1|423_939_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|993_1296_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1310_1430_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_172841604.1|1422_2877_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.4	9.2e-146
WP_000980381.1|4496_4982_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4978_6079_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|6169_6388_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|7969_8428_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|8535_8874_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|8980_9829_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_001131144.1|15749_16454_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000224487.1|17858_18857_-	ribose operon transcriptional repressor RbsR	NA	NA	NA	NA	NA
WP_000844732.1|18860_19790_-	ribokinase	NA	NA	NA	NA	NA
WP_001056260.1|19922_20813_-	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA	NA
WP_000211345.1|20837_21803_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_000339360.1|21808_23314_-	ribose ABC transporter ATP-binding protein RbsA	NA	G3M9Y6	Bacillus_virus	26.8	1.5e-13
WP_000715950.1|23321_23741_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000102337.1|23957_25826_-	low affinity potassium transporter Kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	5.1e-64
WP_000940993.1|26173_27670_+	ATPase RavA	NA	NA	NA	NA	NA
WP_000956591.1|27663_29115_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA	NA
WP_000845119.1|29119_30112_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.3	5.5e-49
WP_000433016.1|30262_30721_+	transcriptional regulator AsnC	NA	NA	NA	NA	NA
WP_000763722.1|30810_31254_+	FMN-binding protein MioC	NA	NA	NA	NA	NA
WP_000499882.1|31632_33522_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_001519938.1|33624_34248_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_001145371.1|34861_35242_+	F0F1 ATP synthase subunit I	NA	NA	NA	NA	NA
WP_000135632.1|35250_36066_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_000429386.1|36112_36352_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_001052212.1|36411_36882_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_001288957.1|36896_37430_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_001176751.1|37442_38984_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_000896504.1|39034_39898_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_000190499.1|39924_41307_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_001251971.1|41327_41747_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_000009901.1|41975_42674_+	Bax inhibitor-1 family protein	NA	NA	NA	NA	NA
WP_000934853.1|42993_44364_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	38.7	8.7e-37
WP_000334049.1|44552_46382_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	42.9	2.0e-129
WP_000773772.1|46792_47368_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010989263.1|47465_48164_+	fimbrial chaperone	NA	NA	NA	NA	NA
WP_024131224.1|48185_48698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001247056.1|48800_50720_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_050194894.1|50731_51799_+	fimbrial protein StgD	NA	NA	NA	NA	NA
WP_000235491.1|51829_53587_-	SgrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000166706.1|53681_54452_+	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000162538.1|54500_55874_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000867129.1|56039_57080_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	35.9	2.0e-46
WP_000741630.1|57215_58175_+	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
WP_000212190.1|58174_59065_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000063118.1|59151_59925_+	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	30.6	2.0e-14
WP_000377800.1|59939_60665_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000078084.1|60759_61425_-	6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
WP_001583487.1|61593_62931_+	adenine permease AdeP	NA	A0A0R6PHV4	Moraxella_phage	37.1	1.8e-63
WP_021013212.1|62975_63560_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000190678.1|63559_64315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000749373.1|64472_65432_-	HTH-type transcriptional regulator YidZ	NA	NA	NA	NA	NA
WP_000819608.1|65400_66588_-	MFS transporter	NA	NA	NA	NA	NA
WP_000019075.1|66770_68135_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
>prophage 2
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	810437	846549	4757695	transposase,protease,tRNA,bacteriocin,integrase	Acinetobacter_phage(33.33%)	39	800070:800084	833827:833841
800070:800084	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|810437_810716_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|810958_811225_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|811221_811539_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|812659_813004_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|813188_813473_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|813814_814522_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|817132_818389_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|818605_819691_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|819803_820079_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|820106_821159_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|821313_822033_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|822032_822359_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|822408_823128_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|823250_823709_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|824027_825074_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|825206_826214_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|826304_827441_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|827433_828027_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|828034_828325_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|828321_828888_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|828906_829611_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|829628_830609_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|830738_831425_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|831471_831888_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|831887_832451_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|832666_833614_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|833633_834365_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
833827:833841	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|834441_835149_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|835244_835742_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|835820_837215_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|837707_838862_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|838917_839217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|839213_839378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|839511_839643_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|839651_841628_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|841855_842776_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|842876_843635_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|843910_845902_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|846090_846549_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	1118951	1184942	4757695	tail,tRNA	Salmonella_phage(41.18%)	54	NA	NA
WP_000047238.1|1118951_1121582_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1121816_1122002_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1123400_1123967_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1123963_1124389_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1124465_1126022_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1126171_1126687_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1127032_1128403_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|1128451_1129990_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1130006_1131179_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1131305_1131836_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1132332_1133517_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1133681_1134677_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1134746_1135811_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1137359_1138319_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1138329_1140474_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|1140446_1140857_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|1140853_1141099_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_000209805.1|1141370_1141802_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1143308_1143635_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1143796_1144147_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1144181_1144631_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1145329_1145731_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|1146079_1146607_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1146616_1146916_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1147098_1147257_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1147827_1148505_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_000531291.1|1148546_1149947_-	GABA permease	NA	NA	NA	NA	NA
WP_001095643.1|1150076_1151360_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1151374_1152823_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1152844_1154113_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|1154138_1155116_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1155418_1156933_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1156943_1157378_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|1157389_1158199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1158353_1159028_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1159014_1160430_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1160670_1161576_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1162297_1163194_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1163487_1164417_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1164933_1165986_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|1167007_1169188_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1169247_1170165_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1170196_1171441_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1171550_1175207_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1175287_1176403_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905046.1|1177086_1177653_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1177795_1178968_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1178977_1179493_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|1179547_1179850_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1179864_1179984_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|1179976_1183054_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|1183050_1183536_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|1183532_1184633_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1184723_1184942_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 4
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	1871292	1878604	4757695	protease,integrase	Dickeya_phage(16.67%)	7	1872543:1872557	1883535:1883549
WP_001201759.1|1871292_1872411_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1872407_1874354_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1872543:1872557	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1874483_1874705_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1875028_1875349_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1875379_1877656_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1877867_1878065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1878226_1878604_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1883535:1883549	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 5
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	1949542	1991601	4757695	terminase,holin,tail,plate,head	Salmonella_phage(77.78%)	61	NA	NA
WP_001262313.1|1949542_1950835_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1950879_1951128_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1951168_1951408_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1951413_1952295_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1952291_1953356_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1953433_1954114_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1954110_1954896_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1954901_1955198_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1955288_1955489_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1955777_1956182_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1956311_1956548_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1956513_1956888_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1956972_1957956_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1957958_1958708_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1958718_1959066_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1959062_1959587_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1959586_1960060_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1960063_1960636_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|1961481_1961661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1961671_1962169_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1962353_1962593_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|1962927_1963530_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1963738_1964350_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1964346_1964493_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1964482_1965280_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1965678_1965804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1965939_1966389_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1966605_1966995_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1966981_1967263_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1967262_1967877_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_001050879.1|1967873_1968413_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_000495544.1|1968455_1968833_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1968929_1969157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|1969246_1969999_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|1969964_1971368_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|1971367_1972837_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|1972721_1973459_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1973473_1974706_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1974710_1975208_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1975219_1976161_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1976202_1976571_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1976536_1976944_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1976940_1977495_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1977481_1977871_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1977845_1978409_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1978412_1979558_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|1979569_1980010_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|1980013_1980466_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|1980643_1982596_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|1982595_1983246_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1983249_1983552_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1983554_1984586_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1984582_1984918_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1985112_1985844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1985843_1986272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1986330_1987086_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|1987326_1987680_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1987680_1988880_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1988876_1989557_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1989556_1991068_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|1991082_1991601_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
>prophage 6
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	2471758	2545356	4757695	capsid,transposase,protease,tail,tRNA,plate,integrase	Burkholderia_virus(38.1%)	88	2462088:2462103	2517961:2517976
2462088:2462103	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000502119.1|2471758_2472217_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2472173_2472356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|2472749_2473001_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2473269_2474091_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2474125_2474455_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2474441_2474804_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|2475220_2476255_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2476429_2477818_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2477828_2479358_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2479884_2480829_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2481010_2481400_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|2481371_2481821_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|2481813_2482029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2482018_2482249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2482245_2482929_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|2482925_2483126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2483133_2483517_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2483513_2483816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2483825_2484098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2484386_2484917_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2484944_2485214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2485216_2486383_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|2486393_2488163_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000567456.1|2488166_2488331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144079282.1|2488340_2488724_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	58.9	1.7e-27
WP_100208317.1|2488767_2489364_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|2489607_2489958_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|2489960_2490689_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|2490672_2491323_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2491319_2491646_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2491645_2491957_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2491956_2492502_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_170825686.1|2492552_2494094_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000090679.1|2494093_2495590_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|2495570_2496392_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|2496394_2496853_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2497067_2498183_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|2498197_2499151_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|2499160_2499499_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2499500_2499947_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2499946_2500411_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|2500410_2500662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2500651_2502079_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|2502075_2502600_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|2502602_2502884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2502981_2503317_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2503261_2503399_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2503492_2505958_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2505957_2506842_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|2506841_2507054_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2507041_2508196_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2508192_2508720_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2508776_2509124_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2509114_2510218_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|2510210_2510789_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_000002046.1|2510791_2511817_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
WP_024131174.1|2511827_2512304_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|2512310_2512928_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_001802272.1|2512927_2513431_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_024134057.1|2513441_2513903_-|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_024131173.1|2513913_2514387_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_001165548.1|2514458_2515031_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2515311_2516694_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2516755_2517091_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|2517217_2517949_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000824321.1|2518429_2519581_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
2517961:2517976	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000928668.1|2519733_2521440_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001681605.1|2521550_2522852_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2522927_2523857_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2523853_2525257_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2525424_2527071_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2527270_2528446_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2528548_2530057_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|2530762_2531764_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|2531837_2532878_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|2533085_2533211_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2533509_2533725_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2533813_2534254_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2534330_2534912_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2534911_2535490_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2535482_2537504_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2537504_2538563_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2538566_2539187_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2539189_2539882_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|2539881_2540517_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2541117_2542623_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2542727_2543333_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2544081_2545356_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 7
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	2726401	2730813	4757695		Escherichia_phage(50.0%)	6	NA	NA
WP_000497451.1|2726401_2726641_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|2727513_2728323_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2728395_2728773_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2728920_2729463_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2729654_2730383_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2730399_2730813_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 8
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	2934709	2941943	4757695		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2934709_2936140_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2936213_2936909_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2936988_2937300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2937950_2939135_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2939395_2939584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2939594_2939807_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2940252_2941521_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2941523_2941943_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 9
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	3025685	3036192	4757695		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|3025685_3026999_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|3027025_3028105_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|3028109_3028883_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|3028898_3029873_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|3029878_3030430_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|3030430_3031309_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|3031356_3032256_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|3032255_3033341_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|3033717_3034611_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|3034788_3036192_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 10
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	3112084	3121255	4757695	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3112084_3114118_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3114358_3114817_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3114988_3115519_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3115575_3116043_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_050186121.1|3116089_3116809_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_050194873.1|3116805_3118491_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.4e-278
WP_001240415.1|3118713_3119445_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3119504_3119612_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3119592_3120324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3120307_3121255_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 11
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	3355764	3361795	4757695		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3355764_3356706_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3357948_3358338_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3358306_3358561_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3358577_3360500_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3361489_3361633_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3361648_3361795_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 12
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	4015194	4027855	4757695	integrase	Enterobacteria_phage(55.56%)	13	4014653:4014666	4026064:4026077
4014653:4014666	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_000783716.1|4015194_4017528_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	86.5	0.0e+00
WP_000795388.1|4017542_4017863_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001216603.1|4017859_4018087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015701354.1|4018083_4018635_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_000556588.1|4018631_4018898_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	5.8e-30
WP_001779443.1|4019437_4020181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000468230.1|4020184_4020424_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_000214423.1|4020439_4021006_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000493739.1|4021281_4022445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700163.1|4022434_4023493_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000573583.1|4023489_4024566_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|4024628_4025894_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|4026364_4027855_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
4026064:4026077	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 13
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	4166819	4245758	4757695	terminase,capsid,portal,lysis,tail,plate,integrase,head	Salmonella_phage(83.33%)	88	4173972:4173987	4246852:4246867
WP_000954536.1|4166819_4168079_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4168389_4169673_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4170653_4171436_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|4171705_4171900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|4172292_4172514_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4172510_4172972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4173518_4175192_+	hypothetical protein	NA	NA	NA	NA	NA
4173972:4173987	attL	GAAGAAGACTTCTTTG	NA	NA	NA	NA
WP_010989300.1|4175272_4177558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|4177861_4178113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4178194_4178647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|4178826_4179315_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4179311_4179605_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4180031_4181045_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4181208_4182798_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|4182781_4184293_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|4185146_4185686_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4185930_4187208_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4187210_4188257_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_072078427.1|4188280_4190776_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632616.1|4190775_4192512_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4192556_4193624_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4193633_4194428_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4194453_4195149_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4195171_4196476_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|4196495_4198466_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|4198767_4199514_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4199513_4200404_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|4200414_4200672_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|4201778_4202804_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4202807_4203440_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4203556_4203799_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4203831_4204341_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4204348_4204549_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4204512_4204854_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4204921_4205155_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4205154_4205382_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4205378_4205963_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4205959_4206820_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_000301193.1|4206810_4209219_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_001154438.1|4209386_4209575_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4209586_4209820_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4209915_4210134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4210143_4211208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4211204_4212269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4212288_4212984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4213032_4214076_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4214075_4215842_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4215984_4216818_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|4216834_4217899_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|4217902_4218553_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4218646_4219111_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4219110_4219314_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4219317_4219533_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4219513_4220023_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4220027_4220405_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|4220401_4220830_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039961.1|4220925_4221357_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_000343944.1|4221349_4221796_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4221864_4222443_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4222439_4222799_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|4222785_4223694_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|4223686_4224292_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|4224288_4225908_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|4225914_4226322_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4226519_4227242_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4227455_4227674_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4227776_4228949_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4228958_4229474_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|4229528_4229831_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4229845_4229965_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_161976233.1|4230191_4232738_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000980405.1|4232737_4233223_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|4233219_4234320_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|4234387_4234606_+	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|4234692_4235070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4235289_4236564_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4236695_4236965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4237064_4237391_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022217.1|4237465_4238365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4238438_4239347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4239418_4241368_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|4241456_4241915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4241992_4242289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4242285_4242738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4242755_4242965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4243335_4243716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|4243811_4244114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907593.1|4244837_4245758_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
4246852:4246867	attR	GAAGAAGACTTCTTTG	NA	NA	NA	NA
>prophage 14
NZ_LT904876	Salmonella enterica subsp. enterica serovar Typhi strain ERL114000 chromosome 1	4757695	4732254	4757695	4757695	terminase,capsid,portal,lysis,tail,plate,integrase,head	Salmonella_phage(87.1%)	36	4727218:4727232	4739384:4739398
4727218:4727232	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4732254_4733901_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4734040_4734139_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4734764_4735817_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4736005_4736197_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4736212_4736782_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4736907_4737129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4737161_4737671_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4737678_4737975_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4738092_4738434_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4738501_4738735_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4738734_4738962_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4738958_4739816_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4739384:4739398	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4739812_4742227_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4742380_4742569_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4742636_4742936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4743044_4743923_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4744536_4745451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4745447_4746188_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_050194892.1|4746222_4747260_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4747259_4749026_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4749168_4750002_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4750018_4751077_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4751080_4751731_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4751826_4752291_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4752290_4752494_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4752497_4752713_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4752693_4753206_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4753207_4753585_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4753581_4754010_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4754105_4754537_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4754529_4754976_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4755044_4755623_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4755619_4755979_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4755965_4756874_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4756866_4757472_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104778.1|4757468_4757695_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	93.3	1.7e-30
