assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	1	339137-339359	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_2|NZ_CP012095.1_331491_331674_-,NA	NA|732aa|up_9|NZ_CP012095.1_324597_326793_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NZ_CP012095.1_326906_328040_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NZ_CP012095.1_328036_328657_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NZ_CP012095.1_328753_329335_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NZ_CP012095.1_329264_329990_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NZ_CP012095.1_330079_331000_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NZ_CP012095.1_331039_331468_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_2|NZ_CP012095.1_331491_331674_-	NA	NA|849aa|up_1|NZ_CP012095.1_331833_334380_-	pfam00934, PE, PE family	NA|900aa|up_0|NZ_CP012095.1_334643_337343_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP012095.1_340387_341998_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP012095.1_342021_342930_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP012095.1_343153_345049_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP012095.1_345045_346662_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP012095.1_346658_350651_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP012095.1_350647_350956_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP012095.1_350958_352500_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP012095.1_352548_352842_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP012095.1_352871_353162_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP012095.1_353172_354060_+	pfam14011, ESX-1_EspG, EspG family
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	2	339442-339666	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCCCCGCCGGCGCCGCCGGTCGCGCCG	42	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_2|NZ_CP012095.1_331491_331674_-,NA	NA|732aa|up_9|NZ_CP012095.1_324597_326793_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NZ_CP012095.1_326906_328040_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NZ_CP012095.1_328036_328657_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NZ_CP012095.1_328753_329335_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NZ_CP012095.1_329264_329990_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NZ_CP012095.1_330079_331000_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NZ_CP012095.1_331039_331468_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_2|NZ_CP012095.1_331491_331674_-	NA	NA|849aa|up_1|NZ_CP012095.1_331833_334380_-	pfam00934, PE, PE family	NA|900aa|up_0|NZ_CP012095.1_334643_337343_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP012095.1_340387_341998_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP012095.1_342021_342930_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP012095.1_343153_345049_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP012095.1_345045_346662_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP012095.1_346658_350651_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP012095.1_350647_350956_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP012095.1_350958_352500_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP012095.1_352548_352842_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP012095.1_352871_353162_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP012095.1_353172_354060_+	pfam14011, ESX-1_EspG, EspG family
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	3	693162-693238	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP012095.1_679055_679463_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP012095.1_679522_680209_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP012095.1_680362_682996_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP012095.1_683018_685406_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP012095.1_685543_686266_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP012095.1_686262_687060_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP012095.1_687061_687949_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP012095.1_687954_689169_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP012095.1_689165_690197_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP012095.1_690193_691639_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP012095.1_694373_695924_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP012095.1_695975_696368_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP012095.1_696364_696622_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP012095.1_696804_698040_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP012095.1_698290_698704_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP012095.1_698700_698937_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP012095.1_699040_699547_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP012095.1_699660_700131_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP012095.1_700174_700936_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP012095.1_700992_701304_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	4	927345-928256	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238|928212-928238	NZ_CP012095.1_835213-835239|NZ_CP012095.1_331948-331922|NZ_CP012095.1_334758-334732|NZ_CP012095.1_337704-337678|NZ_CP012095.1_841473-841499|NZ_CP012095.1_842799-842825|NZ_CP012095.1_927078-927104|NZ_CP012095.1_2409258-2409232|NZ_CP012095.1_333184-333158|NZ_CP012095.1_335709-335683|NZ_CP012095.1_336048-336022|NZ_CP012095.1_338823-338797|NZ_CP012095.1_676262-676236|NZ_CP012095.1_838585-838611|NZ_CP012095.1_839683-839709|NZ_CP012095.1_926979-927005|NZ_CP012095.1_1215321-1215347|NZ_CP012095.1_1656997-1656971|NZ_CP012095.1_1854646-1854620|NZ_CP012095.1_2056446-2056420|NZ_CP012095.1_3760388-3760414|NZ_CP012095.1_3890147-3890173|NZ_CP012095.1_3890303-3890329	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP012095.1_932374_932926_-,NA|81aa|down_8|NZ_CP012095.1_938401_938644_+	NA|685aa|up_9|NZ_CP012095.1_914981_917036_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP012095.1_917201_918371_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP012095.1_918458_919475_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP012095.1_919636_920278_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP012095.1_920358_921414_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP012095.1_921465_921858_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP012095.1_921915_922338_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP012095.1_922299_922590_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP012095.1_922694_923600_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP012095.1_923618_924434_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP012095.1_928633_931282_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP012095.1_931749_932394_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP012095.1_932374_932926_-	NA	NA|241aa|down_3|NZ_CP012095.1_933006_933729_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP012095.1_933799_934828_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NZ_CP012095.1_935516_936299_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP012095.1_936385_937198_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP012095.1_937265_938126_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP012095.1_938401_938644_+	NA	NA|431aa|down_9|NZ_CP012095.1_938920_940213_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	5	1213393-1214249	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	76	1213776-1213797|1213821-1213836|1213959-1213980|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094|1214076-1214094	NZ_CP012095.1_2932464-2932443|NZ_CP012095.1_2083580-2083565|NZ_CP012095.1_839047-839068|NZ_CP012095.1_335145-335127|NZ_CP012095.1_675926-675908|NZ_CP012095.1_841305-841323|NZ_CP012095.1_1215000-1215018|NZ_CP012095.1_1631556-1631538|NZ_CP012095.1_1634382-1634364|NZ_CP012095.1_1637240-1637222|NZ_CP012095.1_1638002-1637984|NZ_CP012095.1_1638197-1638179|NZ_CP012095.1_1986273-1986255|NZ_CP012095.1_2056620-2056602|NZ_CP012095.1_2057166-2057148|NZ_CP012095.1_2774006-2773988|NZ_CP012095.1_2777531-2777513|NZ_CP012095.1_3884781-3884799|NZ_CP012095.1_150203-150221|NZ_CP012095.1_332113-332095|NZ_CP012095.1_336252-336234|NZ_CP012095.1_336705-336687|NZ_CP012095.1_336756-336738|NZ_CP012095.1_336765-336747|NZ_CP012095.1_339036-339018|NZ_CP012095.1_339432-339414|NZ_CP012095.1_364122-364104|NZ_CP012095.1_444464-444446|NZ_CP012095.1_547816-547798|NZ_CP012095.1_625129-625147|NZ_CP012095.1_625351-625369|NZ_CP012095.1_675092-675074|NZ_CP012095.1_842301-842319|NZ_CP012095.1_1091503-1091521|NZ_CP012095.1_1092151-1092169|NZ_CP012095.1_1096221-1096203|NZ_CP012095.1_1214448-1214466|NZ_CP012095.1_1214919-1214937|NZ_CP012095.1_1215210-1215228|NZ_CP012095.1_1215228-1215246|NZ_CP012095.1_1219462-1219480|NZ_CP012095.1_1491737-1491719|NZ_CP012095.1_1619482-1619464|NZ_CP012095.1_1619935-1619917|NZ_CP012095.1_1637105-1637087|NZ_CP012095.1_1637114-1637096|NZ_CP012095.1_1637327-1637309|NZ_CP012095.1_1637378-1637360|NZ_CP012095.1_1854223-1854205|NZ_CP012095.1_1854751-1854733|NZ_CP012095.1_1985547-1985529|NZ_CP012095.1_1996508-1996526|NZ_CP012095.1_2083778-2083760|NZ_CP012095.1_2292392-2292374|NZ_CP012095.1_2343863-2343845|NZ_CP012095.1_2405188-2405206|NZ_CP012095.1_2409171-2409153|NZ_CP012095.1_2551849-2551831|NZ_CP012095.1_2666666-2666684|NZ_CP012095.1_2767322-2767304|NZ_CP012095.1_2767904-2767886|NZ_CP012095.1_3015674-3015692|NZ_CP012095.1_3015773-3015791|NZ_CP012095.1_3664918-3664936|NZ_CP012095.1_3696076-3696058|NZ_CP012095.1_3696268-3696250|NZ_CP012095.1_3696511-3696493|NZ_CP012095.1_3696643-3696625|NZ_CP012095.1_3698548-3698530|NZ_CP012095.1_3880492-3880510|NZ_CP012095.1_3882717-3882735|NZ_CP012095.1_3890525-3890543|NZ_CP012095.1_3981179-3981161|NZ_CP012095.1_4037727-4037745|NZ_CP012095.1_4037817-4037835|NZ_CP012095.1_4037925-4037943	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP012095.1_1208825_1209092_+,NA|61aa|down_3|NZ_CP012095.1_1216796_1216979_+	NA|465aa|up_9|NZ_CP012095.1_1203159_1204554_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP012095.1_1204755_1205478_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP012095.1_1205509_1206676_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP012095.1_1206746_1207241_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP012095.1_1207426_1207861_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP012095.1_1207962_1208829_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP012095.1_1208825_1209092_+	NA	NA|674aa|up_2|NZ_CP012095.1_1209078_1211100_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP012095.1_1211198_1211927_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP012095.1_1212037_1212826_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP012095.1_1215611_1215932_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP012095.1_1216084_1216519_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP012095.1_1216620_1216785_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP012095.1_1216796_1216979_+	NA	NA|152aa|down_4|NZ_CP012095.1_1217170_1217626_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|802aa|down_5|NZ_CP012095.1_1218040_1220446_+	pfam00934, PE, PE family	NA|313aa|down_6|NZ_CP012095.1_1220663_1221602_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP012095.1_1221989_1223270_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP012095.1_1223374_1224202_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP012095.1_1224412_1225714_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	6	1619522-1619686	3	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCCGCGCCGCCGTTGCCGCCGTCGCCGCCA	33	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|46aa|up_7|NZ_CP012095.1_1613054_1613192_+,NA|76aa|up_2|NZ_CP012095.1_1617184_1617412_-,NA|38aa|down_2|NZ_CP012095.1_1623981_1624095_-,NA|137aa|down_3|NZ_CP012095.1_1624144_1624555_-	NA|474aa|up_9|NZ_CP012095.1_1610647_1612069_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_8|NZ_CP012095.1_1612232_1613048_+	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|46aa|up_7|NZ_CP012095.1_1613054_1613192_+	NA	NA|210aa|up_6|NZ_CP012095.1_1613140_1613770_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|340aa|up_5|NZ_CP012095.1_1614126_1615146_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|413aa|up_4|NZ_CP012095.1_1615148_1616387_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_3|NZ_CP012095.1_1616383_1617169_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|76aa|up_2|NZ_CP012095.1_1617184_1617412_-	NA	NA|142aa|up_1|NZ_CP012095.1_1617780_1618206_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|78aa|up_0|NZ_CP012095.1_1618656_1618890_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|767aa|down_0|NZ_CP012095.1_1620610_1622911_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|down_1|NZ_CP012095.1_1623026_1623512_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|down_2|NZ_CP012095.1_1623981_1624095_-	NA	NA|137aa|down_3|NZ_CP012095.1_1624144_1624555_-	NA	NA|248aa|down_4|NZ_CP012095.1_1624571_1625315_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|down_5|NZ_CP012095.1_1625311_1626223_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|down_6|NZ_CP012095.1_1626275_1627820_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_7|NZ_CP012095.1_1627816_1628938_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|down_8|NZ_CP012095.1_1628954_1631057_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1400aa|down_9|NZ_CP012095.1_1631495_1635695_-	pfam00934, PE, PE family
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	7	2083250-2083504	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2083331-2083348|2083331-2083348|2083421-2083438	NZ_CP012095.1_402130-402113|NZ_CP012095.1_608540-608523|NZ_CP012095.1_3411696-3411679	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP012095.1_2082609_2082873_-,NA	NA|165aa|up_9|NZ_CP012095.1_2069015_2069510_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP012095.1_2069801_2070479_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP012095.1_2070837_2073663_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP012095.1_2073889_2074750_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP012095.1_2074790_2075657_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP012095.1_2075661_2077548_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP012095.1_2077563_2079597_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP012095.1_2079716_2081942_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP012095.1_2082217_2082613_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP012095.1_2082609_2082873_-	NA	NA|350aa|down_0|NZ_CP012095.1_2084494_2085544_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP012095.1_2085543_2086911_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP012095.1_2087084_2088524_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NZ_CP012095.1_2090036_2090987_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NZ_CP012095.1_2091001_2091418_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NZ_CP012095.1_2091695_2092118_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NZ_CP012095.1_2092166_2092469_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NZ_CP012095.1_2092465_2092780_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NZ_CP012095.1_2092779_2094513_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NZ_CP012095.1_2094512_2095148_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	8	2165414-2165539	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP012095.1_2154810_2155218_-,NA|127aa|down_5|NZ_CP012095.1_2173148_2173529_-	NA|216aa|up_9|NZ_CP012095.1_2148124_2148772_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP012095.1_2148778_2151001_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP012095.1_2151038_2151482_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP012095.1_2151595_2152189_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP012095.1_2152271_2152877_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP012095.1_2152976_2153981_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP012095.1_2154080_2154833_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP012095.1_2154810_2155218_-	NA	NA|767aa|up_1|NZ_CP012095.1_2155352_2157653_+	PLN02892, PLN02892, isocitrate lyase	NA|2029aa|up_0|NZ_CP012095.1_2157822_2163909_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP012095.1_2167659_2168124_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP012095.1_2168221_2169085_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP012095.1_2169122_2170394_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP012095.1_2170665_2171781_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP012095.1_2171771_2173112_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP012095.1_2173148_2173529_-	NA	NA|621aa|down_6|NZ_CP012095.1_2173685_2175548_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP012095.1_2175555_2176035_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP012095.1_2176271_2177045_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP012095.1_2177048_2177816_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	9	3080208-3081493	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	1	1	3080985-3081019	NZ_CP012095.1_3081494-3081528	II-B,III-A:II-B,III-A:II-B,III-A	15,17,17	17	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP012095.1_3073487_3073742_-,NA|135aa|up_7|NZ_CP012095.1_3073889_3074294_+,NA|64aa|up_6|NZ_CP012095.1_3074290_3074482_+,NA|86aa|up_4|NZ_CP012095.1_3076068_3076326_+,NA|104aa|up_3|NZ_CP012095.1_3076430_3076742_+,NA|203aa|up_2|NZ_CP012095.1_3077161_3077770_+,NA	NA|92aa|up_9|NZ_CP012095.1_3073036_3073312_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP012095.1_3073487_3073742_-	NA	NA|135aa|up_7|NZ_CP012095.1_3073889_3074294_+	NA	NA|64aa|up_6|NZ_CP012095.1_3074290_3074482_+	NA	NA|385aa|up_5|NZ_CP012095.1_3074680_3075835_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP012095.1_3076068_3076326_+	NA	NA|104aa|up_3|NZ_CP012095.1_3076430_3076742_+	NA	NA|203aa|up_2|NZ_CP012095.1_3077161_3077770_+	NA	NA|470aa|up_1|NZ_CP012095.1_3077840_3079250_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP012095.1_3079246_3080059_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP012095.1_3081590_3082852_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP012095.1_3084731_3085073_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP012095.1_3085073_3086090_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NZ_CP012095.1_3087346_3088474_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP012095.1_3088470_3089379_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP012095.1_3089359_3090070_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP012095.1_3090079_3090454_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP012095.1_3090450_3092889_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP012095.1_3092885_3093608_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP012095.1_3094007_3094553_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	10	3082887-3084683	5,4,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	24,24,23	24	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP012095.1_3073487_3073742_-,NA|135aa|up_8|NZ_CP012095.1_3073889_3074294_+,NA|64aa|up_7|NZ_CP012095.1_3074290_3074482_+,NA|86aa|up_5|NZ_CP012095.1_3076068_3076326_+,NA|104aa|up_4|NZ_CP012095.1_3076430_3076742_+,NA|203aa|up_3|NZ_CP012095.1_3077161_3077770_+,NA	NA|85aa|up_9|NZ_CP012095.1_3073487_3073742_-	NA	NA|135aa|up_8|NZ_CP012095.1_3073889_3074294_+	NA	NA|64aa|up_7|NZ_CP012095.1_3074290_3074482_+	NA	NA|385aa|up_6|NZ_CP012095.1_3074680_3075835_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP012095.1_3076068_3076326_+	NA	NA|104aa|up_4|NZ_CP012095.1_3076430_3076742_+	NA	NA|203aa|up_3|NZ_CP012095.1_3077161_3077770_+	NA	NA|470aa|up_2|NZ_CP012095.1_3077840_3079250_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP012095.1_3079246_3080059_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP012095.1_3081590_3082852_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP012095.1_3084731_3085073_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP012095.1_3085073_3086090_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP012095.1_3087346_3088474_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP012095.1_3088470_3089379_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP012095.1_3089359_3090070_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP012095.1_3090079_3090454_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP012095.1_3090450_3092889_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NZ_CP012095.1_3092885_3093608_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP012095.1_3094007_3094553_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP012095.1_3094824_3095709_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	11	3720467-3720593	6	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP012095.1_3713312_3713600_-,NA|88aa|down_3|NZ_CP012095.1_3726719_3726983_-	NA|215aa|up_9|NZ_CP012095.1_3686034_3686679_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_8|NZ_CP012095.1_3686745_3687975_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_7|NZ_CP012095.1_3688257_3689607_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_6|NZ_CP012095.1_3689618_3690758_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_5|NZ_CP012095.1_3690754_3691486_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1339aa|up_4|NZ_CP012095.1_3691494_3695511_-	pfam00823, PPE, PPE family	NA|86aa|up_3|NZ_CP012095.1_3701189_3701447_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|up_2|NZ_CP012095.1_3711799_3712246_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP012095.1_3712282_3713023_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP012095.1_3713312_3713600_-	NA	NA|265aa|down_0|NZ_CP012095.1_3725329_3726124_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP012095.1_3726205_3726577_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP012095.1_3726474_3726693_-	pfam01565, FAD_binding_4, FAD binding domain	NA|88aa|down_3|NZ_CP012095.1_3726719_3726983_-	NA	NA|130aa|down_4|NZ_CP012095.1_3727094_3727484_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP012095.1_3727497_3727791_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP012095.1_3727787_3728633_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP012095.1_3728756_3729032_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP012095.1_3729028_3729286_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP012095.1_3729327_3730518_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	12	3758731-3759672	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCGGGGCCGGCGGAGCCGGCG	24	4	8	3758755-3758775|3758755-3758775|3758839-3758859|3759058-3759078|3759058-3759078|3759058-3759078|3759058-3759078|3759523-3759543	NZ_CP012095.1_970292-970272|NZ_CP012095.1_839673-839693|NZ_CP012095.1_926960-926980|NZ_CP012095.1_2409277-2409257|NZ_CP012095.1_839397-839417|NZ_CP012095.1_1219695-1219715|NZ_CP012095.1_1573770-1573750|NZ_CP012095.1_3759754-3759774	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|297aa|up_5|NZ_CP012095.1_3750349_3751240_-,NA|205aa|down_6|NZ_CP012095.1_3767705_3768320_-,NA|237aa|down_7|NZ_CP012095.1_3768318_3769029_+	NA|35aa|up_9|NZ_CP012095.1_3745535_3745640_+	pfam00934, PE, PE family	NA|297aa|up_8|NZ_CP012095.1_3745718_3746609_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|476aa|up_7|NZ_CP012095.1_3746613_3748041_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|218aa|up_6|NZ_CP012095.1_3748148_3748802_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|297aa|up_5|NZ_CP012095.1_3750349_3751240_-	NA	NA|613aa|up_4|NZ_CP012095.1_3751248_3753087_-	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|330aa|up_3|NZ_CP012095.1_3753083_3754073_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|351aa|up_2|NZ_CP012095.1_3754072_3755125_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|131aa|up_1|NZ_CP012095.1_3755878_3756271_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|103aa|up_0|NZ_CP012095.1_3756270_3756579_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|291aa|down_0|NZ_CP012095.1_3760602_3761475_-	PLN02864, PLN02864, enoyl-CoA hydratase	NA|237aa|down_1|NZ_CP012095.1_3761548_3762259_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|651aa|down_2|NZ_CP012095.1_3762304_3764257_+	PRK07201, PRK07201, SDR family oxidoreductase	NA|288aa|down_3|NZ_CP012095.1_3764257_3765121_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|309aa|down_4|NZ_CP012095.1_3765144_3766071_+	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases	NA|528aa|down_5|NZ_CP012095.1_3766125_3767709_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|205aa|down_6|NZ_CP012095.1_3767705_3768320_-	NA	NA|237aa|down_7|NZ_CP012095.1_3768318_3769029_+	NA	NA|526aa|down_8|NZ_CP012095.1_3769184_3770762_-	PRK00074, guaA, GMP synthase; Reviewed	NA|303aa|down_9|NZ_CP012095.1_3770773_3771682_-	TIGR03465, HpnD, squalene synthase HpnD
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	13	3898815-3899559	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCNNCGGCGGNNCCGGCGGNNNCGGCGG	28	3	11	3898843-3898904|3898843-3898904|3898843-3898904|3898933-3898979|3898933-3898979|3898933-3898979|3899008-3899033|3899008-3899033|3899008-3899033|3899008-3899033|3899008-3899033	NZ_CP012095.1_3897847-3897908|NZ_CP012095.1_3898198-3898259|NZ_CP012095.1_3898483-3898544|NZ_CP012095.1_3897586-3897632|NZ_CP012095.1_3897937-3897983|NZ_CP012095.1_3898573-3898619|NZ_CP012095.1_3882819-3882844|NZ_CP012095.1_3897661-3897686|NZ_CP012095.1_3898012-3898037|NZ_CP012095.1_3898297-3898322|NZ_CP012095.1_3898657-3898682	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP012095.1_3902874_3903714_+	NA|318aa|up_9|NZ_CP012095.1_3871122_3872076_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP012095.1_3872100_3872292_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP012095.1_3872506_3873709_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP012095.1_3873733_3874855_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP012095.1_3874925_3876434_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1361aa|up_4|NZ_CP012095.1_3876604_3880687_+	pfam00934, PE, PE family	NA|1834aa|up_3|NZ_CP012095.1_3880977_3886479_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP012095.1_3886645_3888193_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP012095.1_3888189_3889026_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP012095.1_3895666_3896323_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP012095.1_3900267_3901914_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP012095.1_3901987_3902779_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP012095.1_3902874_3903714_+	NA	NA|237aa|down_3|NZ_CP012095.1_3904992_3905703_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_4|NZ_CP012095.1_3905767_3906811_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_5|NZ_CP012095.1_3906963_3907875_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_6|NZ_CP012095.1_3907890_3908955_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_7|NZ_CP012095.1_3908971_3910156_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_8|NZ_CP012095.1_3910197_3911229_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP012095.1_3911242_3911767_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_001078615.1_ASM107861v1	NZ_CP012095	Mycobacterium tuberculosis variant bovis strain 1595 chromosome, complete genome	14	4054255-4054343	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP012095.1_4044841_4045612_-,NA|233aa|up_0|NZ_CP012095.1_4053359_4054058_-,NA|126aa|down_6|NZ_CP012095.1_4059578_4059956_+	NA|388aa|up_9|NZ_CP012095.1_4040511_4041675_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP012095.1_4041671_4042724_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP012095.1_4043223_4044087_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP012095.1_4044841_4045612_-	NA	NA|549aa|up_5|NZ_CP012095.1_4045608_4047255_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP012095.1_4047251_4048115_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP012095.1_4048107_4049034_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP012095.1_4049035_4050661_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP012095.1_4051368_4053324_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP012095.1_4053359_4054058_-	NA	NA|173aa|down_0|NZ_CP012095.1_4054403_4054922_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP012095.1_4054922_4055906_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP012095.1_4055898_4057092_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP012095.1_4057097_4057919_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP012095.1_4058050_4058734_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP012095.1_4058733_4059471_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP012095.1_4059578_4059956_+	NA	NA|225aa|down_7|NZ_CP012095.1_4060054_4060729_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP012095.1_4060834_4061629_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP012095.1_4061635_4062091_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
