assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001077795.1_ASM107779v1	NZ_CP007204	Riemerella anatipestifer Yb2 chromosome, complete genome	1	879403-880296	1,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	 Type II-B, or Type II-C?,Type II-A,Type II-B,Type II-C	GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATAATTCGCAAC,GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATAATTCGCAAC	47,47	0	0	NA	NA	NA:NA	11,11	11	TypeII-B,orTypeII-C?,TypeII-A,TypeII-B,TypeII-C	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|146aa|up_4|NZ_CP007204.1_871252_871690_-,NA|468aa|up_0|NZ_CP007204.1_877720_879124_+,NA	NA|361aa|up_9|NZ_CP007204.1_864562_865645_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_8|NZ_CP007204.1_865730_866501_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|671aa|up_7|NZ_CP007204.1_866524_868537_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|223aa|up_6|NZ_CP007204.1_868601_869270_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|603aa|up_5|NZ_CP007204.1_869394_871203_-	pfam03772, Competence, Competence protein	NA|146aa|up_4|NZ_CP007204.1_871252_871690_-	NA	NA|543aa|up_3|NZ_CP007204.1_871689_873318_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|398aa|up_2|NZ_CP007204.1_873422_874616_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|936aa|up_1|NZ_CP007204.1_874887_877695_+	cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain	NA|468aa|up_0|NZ_CP007204.1_877720_879124_+	NA	cas2|113aa|down_0|NZ_CP007204.1_880403_880742_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_CP007204.1_880731_881631_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1401aa|down_2|NZ_CP007204.1_881643_885846_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|312aa|down_3|NZ_CP007204.1_886098_887034_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|110aa|down_4|NZ_CP007204.1_887079_887409_-	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional	NA|351aa|down_5|NZ_CP007204.1_887414_888467_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|256aa|down_6|NZ_CP007204.1_888604_889372_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|167aa|down_7|NZ_CP007204.1_889401_889902_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|222aa|down_8|NZ_CP007204.1_889949_890615_+	pfam06078, DUF937, Bacterial protein of unknown function (DUF937)	NA|325aa|down_9|NZ_CP007204.1_890766_891741_+	pfam01916, DS, Deoxyhypusine synthase
GCF_001077795.1_ASM107779v1	NZ_CP007204	Riemerella anatipestifer Yb2 chromosome, complete genome	2	1472160-1472279	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Orphan	TGAAAACAACGGTTGTCCTTGGCCAGATACAGA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA,NA|165aa|down_6|NZ_CP007204.1_1478004_1478499_+	NA|602aa|up_9|NZ_CP007204.1_1454168_1455974_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|458aa|up_8|NZ_CP007204.1_1456056_1457430_-	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like	NA|270aa|up_7|NZ_CP007204.1_1457438_1458248_-	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs	NA|303aa|up_6|NZ_CP007204.1_1458263_1459172_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|774aa|up_5|NZ_CP007204.1_1459185_1461507_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|1659aa|up_4|NZ_CP007204.1_1461524_1466501_-	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex	NA|602aa|up_3|NZ_CP007204.1_1466613_1468419_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|177aa|up_2|NZ_CP007204.1_1468459_1468990_-	cd18097, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|541aa|up_1|NZ_CP007204.1_1469075_1470698_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|153aa|up_0|NZ_CP007204.1_1470794_1471253_+	pfam01668, SmpB, SmpB protein	NA|247aa|down_0|NZ_CP007204.1_1472900_1473641_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|141aa|down_1|NZ_CP007204.1_1473690_1474113_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|363aa|down_2|NZ_CP007204.1_1474235_1475324_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|138aa|down_3|NZ_CP007204.1_1475323_1475737_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|302aa|down_4|NZ_CP007204.1_1475791_1476697_+	pfam16119, DUF4835, Domain of unknown function (DUF4835)	NA|401aa|down_5|NZ_CP007204.1_1476732_1477935_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|165aa|down_6|NZ_CP007204.1_1478004_1478499_+	NA	NA|307aa|down_7|NZ_CP007204.1_1478557_1479478_-	COG4874, COG4874, Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]	NA|205aa|down_8|NZ_CP007204.1_1479608_1480223_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|449aa|down_9|NZ_CP007204.1_1480212_1481559_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
GCF_001077795.1_ASM107779v1	NZ_CP007204	Riemerella anatipestifer Yb2 chromosome, complete genome	3	1712114-1713001	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	Csx28,cas13b	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Type VI-B2,Type VI-B1	GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAANTGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC	36,36,36	3	24	1712150-1712231|1712150-1712231|1712150-1712231|1712150-1712231|1712150-1712231|1712150-1712231|1712150-1712231|1712150-1712231|1712268-1712349|1712268-1712349|1712268-1712349|1712268-1712349|1712268-1712349|1712268-1712349|1712268-1712349|1712268-1712349|1712386-1712467|1712386-1712467|1712386-1712467|1712386-1712467|1712386-1712467|1712386-1712467|1712386-1712467|1712386-1712467	NZ_CP007204.1_1711206-1711287|NZ_CP007204.1_1711324-1711405|NZ_CP007204.1_1711442-1711523|NZ_CP007204.1_1711560-1711641|NZ_CP007204.1_1711678-1711759|NZ_CP007204.1_1711796-1711877|NZ_CP007204.1_1711914-1711995|NZ_CP007204.1_1712032-1712113|NZ_CP007204.1_1711206-1711287|NZ_CP007204.1_1711324-1711405|NZ_CP007204.1_1711442-1711523|NZ_CP007204.1_1711560-1711641|NZ_CP007204.1_1711678-1711759|NZ_CP007204.1_1711796-1711877|NZ_CP007204.1_1711914-1711995|NZ_CP007204.1_1712032-1712113|NZ_CP007204.1_1711206-1711287|NZ_CP007204.1_1711324-1711405|NZ_CP007204.1_1711442-1711523|NZ_CP007204.1_1711560-1711641|NZ_CP007204.1_1711678-1711759|NZ_CP007204.1_1711796-1711877|NZ_CP007204.1_1711914-1711995|NZ_CP007204.1_1712032-1712113	VI-B2:VI-B2:VI-B2	10,7,6	10	TypeVI-B2,TypeVI-B1	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|71aa|up_8|NZ_CP007204.1_1698792_1699005_+,NA|229aa|up_2|NZ_CP007204.1_1707599_1708286_+,Csx28|179aa|down_0|NZ_CP007204.1_1713129_1713666_-	NA|297aa|up_9|NZ_CP007204.1_1692164_1693055_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|71aa|up_8|NZ_CP007204.1_1698792_1699005_+	NA	NA|706aa|up_7|NZ_CP007204.1_1698991_1701109_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|490aa|up_6|NZ_CP007204.1_1701356_1702826_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|483aa|up_5|NZ_CP007204.1_1702828_1704277_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|427aa|up_4|NZ_CP007204.1_1704441_1705722_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|388aa|up_3|NZ_CP007204.1_1705748_1706912_-	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_2|NZ_CP007204.1_1707599_1708286_+	NA	NA|443aa|up_1|NZ_CP007204.1_1708313_1709642_+	cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD) domain	NA|240aa|up_0|NZ_CP007204.1_1709663_1710383_+	pfam14848, HU-DNA_bdg, DNA-binding domain	Csx28|179aa|down_0|NZ_CP007204.1_1713129_1713666_-	NA	cas13b|1096aa|down_1|NZ_CP007204.1_1713672_1716960_-	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	NA|350aa|down_2|NZ_CP007204.1_1717091_1718141_-	pfam02685, Glucokinase, Glucokinase	NA|868aa|down_3|NZ_CP007204.1_1718306_1720910_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|456aa|down_4|NZ_CP007204.1_1721005_1722373_-	pfam00639, Rotamase, PPIC-type PPIASE domain	NA|307aa|down_5|NZ_CP007204.1_1722469_1723390_-	cd01946, ribokinase_group_C, Ribokinase-like subgroup C	NA|188aa|down_6|NZ_CP007204.1_1723415_1723979_-	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD	NA|347aa|down_7|NZ_CP007204.1_1724023_1725064_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|126aa|down_8|NZ_CP007204.1_1725026_1725404_+	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|520aa|down_9|NZ_CP007204.1_1725627_1727187_+	pfam10150, RNase_E_G, Ribonuclease E/G family
GCF_001077795.1_ASM107779v1	NZ_CP007204	Riemerella anatipestifer Yb2 chromosome, complete genome	4	1847428-1847687	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Orphan	GGTTCTAGGCTAAGTCGCCTAGGTTCGTT	29	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|406aa|up_8|NZ_CP007204.1_1835792_1837010_-,NA|546aa|down_4|NZ_CP007204.1_1852460_1854098_+,NA|262aa|down_8|NZ_CP007204.1_1857356_1858142_+	NA|349aa|up_9|NZ_CP007204.1_1834672_1835719_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|406aa|up_8|NZ_CP007204.1_1835792_1837010_-	NA	NA|851aa|up_7|NZ_CP007204.1_1837047_1839600_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|226aa|up_6|NZ_CP007204.1_1839863_1840541_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|341aa|up_5|NZ_CP007204.1_1840548_1841571_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|220aa|up_4|NZ_CP007204.1_1841653_1842313_+	pfam04264, YceI, YceI-like domain	NA|1120aa|up_3|NZ_CP007204.1_1842366_1845726_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|138aa|up_2|NZ_CP007204.1_1845924_1846338_+	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family	NA|191aa|up_1|NZ_CP007204.1_1846334_1846907_+	PRK00150, def, peptide deformylase; Reviewed	NA|141aa|up_0|NZ_CP007204.1_1846934_1847357_+	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|258aa|down_0|NZ_CP007204.1_1847896_1848670_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|242aa|down_1|NZ_CP007204.1_1848721_1849447_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|605aa|down_2|NZ_CP007204.1_1849526_1851341_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|340aa|down_3|NZ_CP007204.1_1851435_1852455_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|546aa|down_4|NZ_CP007204.1_1852460_1854098_+	NA	NA|515aa|down_5|NZ_CP007204.1_1854123_1855668_-	NF033449, BREX_PglZ_3, BREX-3 system phosphatase PglZ	NA|292aa|down_6|NZ_CP007204.1_1855817_1856693_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|167aa|down_7|NZ_CP007204.1_1856841_1857342_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|262aa|down_8|NZ_CP007204.1_1857356_1858142_+	NA	NA|229aa|down_9|NZ_CP007204.1_1858136_1858823_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase
GCF_001077795.1_ASM107779v1	NZ_CP007204	Riemerella anatipestifer Yb2 chromosome, complete genome	5	2155195-2155297	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Orphan	GTTGCGAACTATCACAAAGATAGTA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|161aa|up_8|NZ_CP007204.1_2149478_2149961_-,NA|153aa|up_5|NZ_CP007204.1_2151527_2151986_-,NA|107aa|up_1|NZ_CP007204.1_2153642_2153963_-,NA|110aa|down_0|NZ_CP007204.1_2155299_2155629_-,NA|91aa|down_1|NZ_CP007204.1_2155718_2155991_-,NA|84aa|down_2|NZ_CP007204.1_2155987_2156239_-,NA|122aa|down_3|NZ_CP007204.1_2156245_2156611_-,NA|60aa|down_4|NZ_CP007204.1_2156611_2156791_-,NA|52aa|down_5|NZ_CP007204.1_2156820_2156976_-,NA|250aa|down_6|NZ_CP007204.1_2157159_2157909_-,NA|82aa|down_7|NZ_CP007204.1_2157932_2158178_-,NA|106aa|down_9|NZ_CP007204.1_2158577_2158895_-	NA|433aa|up_9|NZ_CP007204.1_2148085_2149384_-	COG1783, XtmB, Phage terminase large subunit [General function prediction only]	NA|161aa|up_8|NZ_CP007204.1_2149478_2149961_-	NA	NA|242aa|up_7|NZ_CP007204.1_2149950_2150676_-	cd16401, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain	NA|235aa|up_6|NZ_CP007204.1_2150650_2151355_-	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|153aa|up_5|NZ_CP007204.1_2151527_2151986_-	NA	NA|143aa|up_4|NZ_CP007204.1_2151982_2152411_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|105aa|up_3|NZ_CP007204.1_2152513_2152828_-	pfam10902, WYL_2, WYL_2, Sm-like SH3 beta-barrel fold	NA|250aa|up_2|NZ_CP007204.1_2152890_2153640_-	pfam03374, ANT, Phage antirepressor protein KilAC domain	NA|107aa|up_1|NZ_CP007204.1_2153642_2153963_-	NA	NA|275aa|up_0|NZ_CP007204.1_2154235_2155060_-	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|110aa|down_0|NZ_CP007204.1_2155299_2155629_-	NA	NA|91aa|down_1|NZ_CP007204.1_2155718_2155991_-	NA	NA|84aa|down_2|NZ_CP007204.1_2155987_2156239_-	NA	NA|122aa|down_3|NZ_CP007204.1_2156245_2156611_-	NA	NA|60aa|down_4|NZ_CP007204.1_2156611_2156791_-	NA	NA|52aa|down_5|NZ_CP007204.1_2156820_2156976_-	NA	NA|250aa|down_6|NZ_CP007204.1_2157159_2157909_-	NA	NA|82aa|down_7|NZ_CP007204.1_2157932_2158178_-	NA	NA|99aa|down_8|NZ_CP007204.1_2158174_2158471_-	cd11540, NTP-PPase_u3, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|106aa|down_9|NZ_CP007204.1_2158577_2158895_-	NA
